Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0018117

Physical Location & Seq

Genomic Coordinates Forward (+)

46618003 .. 46618450

Gene Structure 448 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G571900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCAAGGGACAAACTGCTGGAAGTGCTCTTGGAGCTTCGCAAGATTTGCCCTCTTAGTCGAGGAGCTATAATTTGGATGAGAGTATGCCTTCTAAAATATTCAGATGCAAATTTCTTTGTTTGTAAACTATTCATACGATTAAGTTCTAAACTTGTGTATGGACCATTGTATGCTCGTGGGAAGCAAAAAGTATCATATAAGAAAACCCTTTATGCTACAGTTGAATGTACTAGAGATCTTTCTAATGCAGATTGTAAGAACTGCTTAAATTTTGCAATAAACGAATTTCTAAGTCGTAATTATAAAATGAGAGGTAAACATGCTATTTATGGGAGTTGTTACATCATATTTGAATTTTACCAATTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

125

Amino Acids

14.62

Weight (kDa)

9.53

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018117)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G571900_v2.0.a1 Prupe.2G027800_v2.0.a1 Prupe.3G131600_v2.0.a1 Prupe.4G264700_v2.0.a1 Prupe.5G040500_v2.0.a1 Prupe.6G115000_v2.0.a1 Prupe.6G146300_v2.0.a1 Prupe.7G024300_v2.0.a1 Prupe.8G113500_v2.0.a1
rosa_samantha	Rh2CG587300 Rh2DG629600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AcsI	RAATTY	4 cut(s)	112, 271, 287, 356
AfaI	GTAC	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	227, 356
AluBI	AGCT	2 cut(s)	37, 68
AluI	AGCT	2 cut(s)	37, 68
Alw21I	GWGCWC	1 cut(s)	30
ApoI	RAATTY	4 cut(s)	112, 271, 287, 356
AspS9I	GGNCC	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	164
BauI	CACGAG	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	30
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	219
BglII	AGATCT	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmsI	GCATC	1 cut(s)	97
BseGI	GGATG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	238
BssMI	GATC	1 cut(s)	238
BssSI	CACGAG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	223
BstAPI	GCANNNNNTGC	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	56, 293
BstF5I	GGATG	1 cut(s)	84
BstKTI	GATC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 34, 48
BstNSI	RCATGY	1 cut(s)	326
BstSFI	CTRYAG	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	1 cut(s)	323
CviJI	RGCY	2 cut(s)	37, 68
CviKI_1	RGCY	2 cut(s)	37, 68
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	2 cut(s)	56, 293
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	164
FaeI	CATG	1 cut(s)	326
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	1 cut(s)	322
FokI	GGATG	1 cut(s)	91
FspBI	CTAG	1 cut(s)	234
Hin1II	CATG	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	128, 320
Hpy188I	TCNGA	1 cut(s)	106
Hpy8I	GTNNAC	2 cut(s)	128, 320
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	3 cut(s)	110, 251, 278
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 34, 48
HpyF3I	CTNAG	2 cut(s)	56, 293
Hsp92II	CATG	1 cut(s)	326
Kzo9I	GATC	1 cut(s)	238
LmnI	GCTCC	2 cut(s)	34, 65
LpnPI	CCDG	1 cut(s)	5
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	7 cut(s)	72, 112, 271, 287, 301, 356, 365
MnlI	CCTC	3 cut(s)	56, 63, 308
MseI	TTAA	2 cut(s)	143, 269
MwoI	GCNNNNNNNGC	3 cut(s)	25, 34, 48
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	1 cut(s)	326
NspI	RCATGY	1 cut(s)	326
PsiI	TTATAA	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	143, 269
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	3 cut(s)	39, 70, 319
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	1 cut(s)	164
Sse9I	AATT	7 cut(s)	72, 112, 271, 287, 301, 356, 365
SspI	AATATT	1 cut(s)	101
SspMI	CTAG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	61
TasI	AATT	7 cut(s)	72, 112, 271, 287, 301, 356, 365
TatI	WGTACW	1 cut(s)	230
Tru1I	TTAA	2 cut(s)	143, 269
Tru9I	TTAA	2 cut(s)	143, 269
TspDTI	ATGAA	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	4 cut(s)	112, 271, 287, 356
XceI	RCATGY	1 cut(s)	326
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.