Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0018117

Physical Location & Seq

Genomic Coordinates Forward (+)

4464130 .. 4464462

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G040500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGACACAGATAATTGGGTCTCTTTAGTGCATACTGGACTCGTTAAGGCTCCATTGTTTTTTGATCAGAATGTTAATAAGTTATTAAAACAAGTATGCTCTAAAGCTTATGTTAACCTACCATTATATGCTCATGGGAATCTAAGTCTTTCGATATATAATAAGTATTCAATTTATGATGCGGCTAAATGTACTAGAGATCTTTCTAGCCAAAATTGTATGAAGTGTCTTGATGTTGCAATTGAGAAACGTCTTAGTCAAAGTCATGGAAGGAGAGGTGGGCAAGTTTATTATGGGAGTTGTTATATTATATTCGAACTTTACTCCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

111

Amino Acids

12.54

Weight (kDa)

8.81

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018117)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G571900_v2.0.a1 Prupe.2G027800_v2.0.a1 Prupe.3G131600_v2.0.a1 Prupe.4G264700_v2.0.a1 Prupe.5G040500_v2.0.a1 Prupe.6G115000_v2.0.a1 Prupe.6G146300_v2.0.a1 Prupe.7G024300_v2.0.a1 Prupe.8G113500_v2.0.a1
rosa_samantha	Rh2CG587300 Rh2DG629600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	182
AfaI	GTAC	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	171
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw26I	GTCTC	1 cut(s)	25
AsuII	TTCGAA	1 cut(s)	315
BclI	TGATCA	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	2 cut(s)	195, 207
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
BmiI	GGNNCC	1 cut(s)	51
BmsI	GCATC	1 cut(s)	169
Bpu14I	TTCGAA	1 cut(s)	315
BsaI	GGTCTC	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	25
Bso31I	GGTCTC	1 cut(s)	25
Bsp119I	TTCGAA	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	64, 199
BspACI	CCGC	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	51
BspT104I	TTCGAA	1 cut(s)	315
BspTNI	GGTCTC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	40
BssMI	GATC	2 cut(s)	64, 199
BstBI	TTCGAA	1 cut(s)	315
BstDEI	CTNAG	2 cut(s)	143, 254
BstKTI	GATC	2 cut(s)	67, 202
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	2 cut(s)	64, 199
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	2 cut(s)	134, 266
CviJI	RGCY	4 cut(s)	50, 107, 185, 210
CviKI_1	RGCY	4 cut(s)	50, 107, 185, 210
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	2 cut(s)	143, 254
DpnI	GATC	2 cut(s)	66, 201
DpnII	GATC	2 cut(s)	64, 199
Eco31I	GGTCTC	1 cut(s)	25
FaeI	CATG	2 cut(s)	137, 269
FatI	CATG	2 cut(s)	133, 265
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	183
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	2 cut(s)	195, 207
GluI	GCNGC	1 cut(s)	183
Hin1II	CATG	2 cut(s)	137, 269
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	105
HinfI	GANTC	2 cut(s)	39, 139
HpaI	GTTAAC	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	1 cut(s)	264
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	2 cut(s)	31, 239
HpyF3I	CTNAG	2 cut(s)	143, 254
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	2 cut(s)	137, 269
Ksp22I	TGATCA	1 cut(s)	64
KspAI	GTTAAC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	64, 199
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	1 cut(s)	21
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	195, 207
MaeII	ACGT	1 cut(s)	250
MalI	GATC	2 cut(s)	66, 201
MboI	GATC	2 cut(s)	64, 199
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	4 cut(s)	13, 171, 214, 240
MlyI	GAGTC	1 cut(s)	33
MnlI	CCTC	1 cut(s)	269
MseI	TTAA	5 cut(s)	45, 75, 86, 114, 331
MunI	CAATTG	1 cut(s)	240
NdeII	GATC	2 cut(s)	64, 199
NlaIII	CATG	2 cut(s)	137, 269
NlaIV	GGNNCC	1 cut(s)	51
NspV	TTCGAA	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SaqAI	TTAA	5 cut(s)	45, 75, 86, 114, 331
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	2 cut(s)	64, 199
SchI	GAGTC	1 cut(s)	33
SetI	ASST	4 cut(s)	109, 120, 253, 280
SfaNI	GCATC	1 cut(s)	169
SfuI	TTCGAA	1 cut(s)	315
SgeI	CNNG	9 cut(s)	48, 53, 104, 146, 207, 219, 242, 278, 296
Sse9I	AATT	4 cut(s)	13, 171, 214, 240
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	2 cut(s)	195, 207
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	2 cut(s)	152, 315
TasI	AATT	4 cut(s)	13, 171, 214, 240
TatI	WGTACW	1 cut(s)	191
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	5 cut(s)	45, 75, 86, 114, 331
Tru9I	TTAA	5 cut(s)	45, 75, 86, 114, 331
TspDTI	ATGAA	1 cut(s)	236
XspI	CTAG	2 cut(s)	195, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.