Prupe.8G113500_v2.0.a1

cysteine-rich repeat secretory protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
14181961 .. 14183834
1874 bp
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UTR
Exon/CDS
Intron
Prupe.8G113500.1

Sequence Viewer

Length: 336 bp
ATGGATAATGAGATTTATTTGAAAAATCGTAAATCCCTCTATAATGCCAAGCTCATTCAAAAGAAAGTGCATCAAGTCTTAACCCAATTATGTGACAAAGTTGTTCGTGGATCGCTGCATGCTCATGGGCAACTAAAAGTATCAGAAAAAAGGACGGTTCACCGTGCAGTTCAATGCACTGGGGATCTTTCTGATATTATTTACACAAACAGTATCAATGTTGCCATAAGAGAACTTCTAGATTATAGTTCTAAGATGGAAAGTGGACGTGCTATTTATGAGAGTTGTTATATCAGATATGAACTTTACCACTTTTACAAGTACGCACTTGTTTAA

Protein Analysis

112

Amino Acids

12.99

Weight (kDa)

9.26

Isoelectric Point (pI)

22.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 118, 192
AfaI GTAC 1 cut(s) 323
AgsI TTSAA 3 cut(s) 22, 59, 173
AjiI CACGTC 1 cut(s) 269
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
AlwI GGATC 2 cut(s) 118, 192
ApeKI GCWGC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 152
BbvI GCAGC 1 cut(s) 102
BccI CCATC 1 cut(s) 250
BfaI CTAG 1 cut(s) 239
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
BmgBI CACGTC 1 cut(s) 269
BmrI ACTGGG 1 cut(s) 189
BmsI GCATC 1 cut(s) 79
BmuI ACTGGG 1 cut(s) 189
Bse1I ACTGG 1 cut(s) 184
BseNI ACTGG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 102
BsgI GTGCAG 1 cut(s) 186
Bsp143I GATC 2 cut(s) 110, 184
BspPI GGATC 2 cut(s) 118, 192
BsrI ACTGG 1 cut(s) 184
BssMI GATC 2 cut(s) 110, 184
Bst4CI ACNGT 3 cut(s) 157, 164, 212
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 252
BstKTI GATC 2 cut(s) 113, 187
BstMBI GATC 2 cut(s) 110, 184
BstNSI RCATGY 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BtrI CACGTC 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 322
CviAII CATG 2 cut(s) 119, 125
CviJI RGCY 1 cut(s) 52
CviKI_1 RGCY 1 cut(s) 52
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 1 cut(s) 252
DpnI GATC 2 cut(s) 112, 186
DpnII GATC 2 cut(s) 110, 184
FaeI CATG 2 cut(s) 122, 128
FaiI YATR 9 cut(s) 42, 91, 120, 126, 227, 246, 279, 291, 300
FatI CATG 2 cut(s) 118, 124
Fnu4HI GCNGC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 116
FspBI CTAG 1 cut(s) 239
GluI GCNGC 1 cut(s) 116
Hin1II CATG 2 cut(s) 122, 128
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 160, 266
Hpy188I TCNGA 3 cut(s) 145, 193, 296
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 2 cut(s) 160, 266
HpyCH4III ACNGT 3 cut(s) 157, 164, 212
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 4 cut(s) 70, 118, 167, 177
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 2 cut(s) 122, 128
Kzo9I GATC 2 cut(s) 110, 184
LpnPI CCDG 1 cut(s) 165
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 1 cut(s) 79
MaeI CTAG 1 cut(s) 239
MaeII ACGT 1 cut(s) 268
MaeIII GTNAC 1 cut(s) 92
MalI GATC 2 cut(s) 112, 186
MboI GATC 2 cut(s) 110, 184
MflI RGATCY 1 cut(s) 184
MluCI AATT 1 cut(s) 86
MnlI CCTC 1 cut(s) 47
MseI TTAA 2 cut(s) 80, 334
MslI CAYNNNNRTG 1 cut(s) 123
NdeII GATC 2 cut(s) 110, 184
NlaIII CATG 2 cut(s) 122, 128
NmuCI GTSAC 1 cut(s) 92
NspI RCATGY 1 cut(s) 122
PaeI GCATGC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 117
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 2 cut(s) 80, 334
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 2 cut(s) 110, 184
SetI ASST 2 cut(s) 54, 271
SfaNI GCATC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 123
SphI GCATGC 1 cut(s) 122
Sse9I AATT 1 cut(s) 86
SspMI CTAG 1 cut(s) 239
TaaI ACNGT 3 cut(s) 157, 164, 212
TaiI ACGT 1 cut(s) 271
TasI AATT 1 cut(s) 86
Tru1I TTAA 2 cut(s) 80, 334
Tru9I TTAA 2 cut(s) 80, 334
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 315
TspRI CASTG 1 cut(s) 184
XbaI TCTAGA 1 cut(s) 238
XceI RCATGY 1 cut(s) 122
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.