Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0018117

Physical Location & Seq

Genomic Coordinates Reverse (-)

12110269 .. 12112113

Gene Structure 1845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G146300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTATGCTTATGGAGAGCTTCCTATTGGAAATAATCATTTAGTTTATGGTGCGACTCAATGCACTCGTGACCTTTCTGGCATTTATTGTGAGGAGTGCCTTGATGCCGCAAAGAATGCACTTTTAACAAAGAGTCATGGAAAGAGAGGCGGGAGCGTTTATTATGGAAGTTGTCATATCAGATTTGAACTTGCTTTATTTTTTATAATTAGACTTGAGTATGTCAAATGTATAAGTCCGCTGCCCAGCCCCTCCACCAAGCCCAGATCCGTCATGATCACTGCCCAGCTTTCCCCACTGCCCAAATCCACCCTTCTCTCTTTCATTGAGTTTGAATCCGCCATGGAAACAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

119

Amino Acids

13.09

Weight (kDa)

6.81

Isoelectric Point (pI)

55.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018117)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G571900_v2.0.a1 Prupe.2G027800_v2.0.a1 Prupe.3G131600_v2.0.a1 Prupe.4G264700_v2.0.a1 Prupe.5G040500_v2.0.a1 Prupe.6G115000_v2.0.a1 Prupe.6G146300_v2.0.a1 Prupe.7G024300_v2.0.a1 Prupe.8G113500_v2.0.a1
rosa_samantha	Rh2CG587300 Rh2DG629600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
AciI	CCGC	4 cut(s)	108, 150, 239, 339
AclWI	GGATC	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	188, 335
AluBI	AGCT	2 cut(s)	19, 289
AluI	AGCT	2 cut(s)	19, 289
AlwI	GGATC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	241
BauI	CACGAG	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	228
BclI	TGATCA	1 cut(s)	276
BisI	GCNGC	2 cut(s)	108, 242
BlsI	GCNGC	2 cut(s)	109, 243
BmsI	GCATC	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	342
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	228
BseYI	CCCAGC	2 cut(s)	245, 285
BsmI	GAATGC	1 cut(s)	121
Bsp143I	GATC	2 cut(s)	266, 276
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	4 cut(s)	108, 150, 239, 339
BspHI	TCATGA	1 cut(s)	273
BspPI	GGATC	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	2 cut(s)	266, 276
BssSI	CACGAG	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstDSI	CCRYGG	1 cut(s)	342
BstKTI	GATC	2 cut(s)	269, 279
BstMBI	GATC	2 cut(s)	266, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BtgI	CCRYGG	1 cut(s)	342
BtsI	GCAGTG	2 cut(s)	279, 296
BtsIMutI	CAGTG	2 cut(s)	279, 296
CciI	TCATGA	1 cut(s)	273
CviAII	CATG	3 cut(s)	137, 274, 343
CviJI	RGCY	4 cut(s)	19, 249, 262, 289
CviKI_1	RGCY	4 cut(s)	19, 249, 262, 289
DpnI	GATC	2 cut(s)	268, 278
DpnII	GATC	2 cut(s)	266, 276
EciI	GGCGGA	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	3 cut(s)	140, 277, 346
FatI	CATG	3 cut(s)	136, 273, 342
FauI	CCCGC	1 cut(s)	143
FbaI	TGATCA	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	108, 242
Fsp4HI	GCNGC	2 cut(s)	108, 242
GluI	GCNGC	2 cut(s)	108, 242
GsaI	CCCAGC	2 cut(s)	249, 289
Hin1II	CATG	3 cut(s)	140, 277, 346
HinfI	GANTC	3 cut(s)	55, 133, 335
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	2 cut(s)	68, 274
HpyAV	CCTTC	1 cut(s)	323
HpyCH4V	TGCA	2 cut(s)	63, 119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
Hsp92II	CATG	3 cut(s)	140, 277, 346
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	266, 276
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	4 cut(s)	63, 259, 277, 299
Lsp1109I	GCAGC	1 cut(s)	228
LweI	GCATC	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	2 cut(s)	268, 278
MboI	GATC	2 cut(s)	266, 276
MflI	RGATCY	1 cut(s)	266
MluCI	AATT	1 cut(s)	207
MlyI	GAGTC	2 cut(s)	49, 142
MnlI	CCTC	3 cut(s)	85, 140, 262
MseI	TTAA	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	241
Mva1269I	GAATGC	1 cut(s)	121
MwoI	GCNNNNNNNGC	1 cut(s)	116
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	2 cut(s)	266, 276
NlaIII	CATG	3 cut(s)	140, 277, 346
NmuCI	GTSAC	1 cut(s)	68
PagI	TCATGA	1 cut(s)	273
PctI	GAATGC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	2 cut(s)	109, 243
PleI	GAGTC	2 cut(s)	49, 141
PpsI	GAGTC	2 cut(s)	49, 141
PsiI	TTATAA	1 cut(s)	206
PspFI	CCCAGC	2 cut(s)	245, 285
PsuI	RGATCY	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	2 cut(s)	108, 242
Sau3AI	GATC	2 cut(s)	266, 276
SchI	GAGTC	2 cut(s)	49, 142
SetI	ASST	3 cut(s)	21, 75, 291
SfaNI	GCATC	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	1 cut(s)	207
SsiI	CCGC	4 cut(s)	108, 150, 239, 339
StyI	CCWWGG	1 cut(s)	342
TasI	AATT	1 cut(s)	207
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	2 cut(s)	286, 303
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	313
TspGWI	ACGGA	1 cut(s)	259
TspRI	CASTG	2 cut(s)	286, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.