Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0018117

Physical Location & Seq

Genomic Coordinates Forward (+)

2887990 .. 2888436

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G027800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCAAAAATGTCCGAGTAAAGCAGGTTTGCAGCTTCGTAAGCGTTGCCCTCTCAATCAAGAAGCTAAAATTTGGACGACAGATTGCCTCTTGAAATACCCAAATGAAAATTTCTTTGGTAAAATAGACATGGATAACAGAGTTTATTTGATAAATCCTGATTTCTATGAAAATACCCAGTTTCTTTCTTATGCTCGTGACTTGTTCACCCAATTATGTTTAAAAGCTTCTAGTGGACCGTTGTATGCTCAAGGGAAGCAAAAAAATTTAAACGGGCAGACATTTTTTGGTTCTGTTGAAGGCACCAAAGACCTTTCTGGCACACATTGTAAGAGTTGTCTCGATGTTGCAACAAATGAATTTCTAAGTCGTGTTCATGAAATAAGAGGTGGACGTGCTATTTTTGGAAATTGTTACATTAGACTCAAACTTTACAGATATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

149

Amino Acids

17.05

Weight (kDa)

9.2

Isoelectric Point (pI)

22.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018117)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G571900_v2.0.a1 Prupe.2G027800_v2.0.a1 Prupe.3G131600_v2.0.a1 Prupe.4G264700_v2.0.a1 Prupe.5G040500_v2.0.a1 Prupe.6G115000_v2.0.a1 Prupe.6G146300_v2.0.a1 Prupe.7G024300_v2.0.a1 Prupe.8G113500_v2.0.a1
rosa_samantha	Rh2CG587300 Rh2DG629600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	14
AccB1I	GGYRCC	1 cut(s)	302
AcsI	RAATTY	4 cut(s)	69, 109, 265, 359
AgsI	TTSAA	2 cut(s)	94, 299
AjiI	CACGTC	1 cut(s)	395
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AluBI	AGCT	3 cut(s)	34, 65, 227
AluI	AGCT	3 cut(s)	34, 65, 227
Alw26I	GTCTC	1 cut(s)	344
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	4 cut(s)	69, 109, 265, 359
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	302
BauI	CACGAG	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	1 cut(s)	231
BfuAI	ACCTGC	1 cut(s)	14
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	236
BmgBI	CACGTC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	304
BmrI	ACTGGG	1 cut(s)	172
BmuI	ACTGGG	1 cut(s)	172
BpuEI	CTTGAG	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	178
BseNI	ACTGG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	43
BshNI	GGYRCC	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	344
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	178
BssSI	CACGAG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	365
BstMAI	GTCTC	1 cut(s)	344
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	43
BtrI	CACGTC	1 cut(s)	395
BveI	ACCTGC	1 cut(s)	14
CciI	TCATGA	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	236
CviAII	CATG	2 cut(s)	130, 377
CviJI	RGCY	3 cut(s)	34, 65, 227
CviKI_1	RGCY	3 cut(s)	34, 65, 227
DdeI	CTNAG	1 cut(s)	365
DraI	TTTAAA	2 cut(s)	222, 270
Eco47I	GGWCC	1 cut(s)	236
FaeI	CATG	2 cut(s)	133, 380
FaiI	YATR	6 cut(s)	131, 168, 192, 217, 246, 378
FatI	CATG	2 cut(s)	129, 376
Fnu4HI	GCNGC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	32
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	133, 380
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	1 cut(s)	423
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	3 cut(s)	207, 236, 392
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	6 cut(s)	59, 91, 158, 197, 341, 377
Hpy8I	GTNNAC	3 cut(s)	207, 236, 392
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	3 cut(s)	4, 31, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	1 cut(s)	365
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	2 cut(s)	133, 380
LpnPI	CCDG	4 cut(s)	9, 171, 191, 303
Lsp1109I	GCAGC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	2 cut(s)	197, 413
MluCI	AATT	6 cut(s)	69, 109, 212, 265, 359, 409
MlyI	GAGTC	1 cut(s)	417
MnlI	CCTC	3 cut(s)	60, 98, 380
MseI	TTAA	2 cut(s)	221, 269
MwoI	GCNNNNNNNGC	1 cut(s)	40
NlaIII	CATG	2 cut(s)	133, 380
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	197
PagI	TCATGA	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	33
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	1 cut(s)	236
SaqAI	TTAA	2 cut(s)	221, 269
SatI	GCNGC	1 cut(s)	32
Sau96I	GGNCC	1 cut(s)	236
SchI	GAGTC	1 cut(s)	417
SetI	ASST	7 cut(s)	28, 36, 67, 229, 315, 391, 397
SinI	GGWCC	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
Sse9I	AATT	6 cut(s)	69, 109, 212, 265, 359, 409
SspMI	CTAG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	240
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	1 cut(s)	342
TasI	AATT	6 cut(s)	69, 109, 212, 265, 359, 409
Tru1I	TTAA	2 cut(s)	221, 269
Tru9I	TTAA	2 cut(s)	221, 269
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	5 cut(s)	120, 183, 365, 372, 393
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	4 cut(s)	69, 109, 265, 359
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.