Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0018117

Physical Location & Seq

Genomic Coordinates Forward (+)

85897134 .. 85902178

Gene Structure 5045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG629600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCATCCATTGTTGTTTGAAGAAAGAGTTCGTAGGTTGTTAACCGAATTATGTAATAAAGCTTCTAGAACAATATTGAAGTTTGCTGATGGCAAGCTACATCTTCACGTAGGTAATAAGGATTTAGATGTTTTTGGTGCAGCTCAATGCACTACTGACCTCTCTAGTGACTCCTGTAAGAAATGCTTTGAAGTAGCAATGAGAGAACTTCCTGAAGACCATCGATGGATTGGTGGGTGTGTACATTATGCGAGTTGTTACATTAGATTTGAAATTTATCCATTTATTTATAGCCAAAACGTGGCTCTTTTATTTTTTGTTTCAGTTGAAAATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

112

Amino Acids

12.9

Weight (kDa)

6.5

Isoelectric Point (pI)

60.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	6 - 92	4.4e-10	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018117)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G571900_v2.0.a1 Prupe.2G027800_v2.0.a1 Prupe.3G131600_v2.0.a1 Prupe.4G264700_v2.0.a1 Prupe.5G040500_v2.0.a1 Prupe.6G115000_v2.0.a1 Prupe.6G146300_v2.0.a1 Prupe.7G024300_v2.0.a1 Prupe.8G113500_v2.0.a1
rosa_samantha	Rh2CG587300 Rh2DG629600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	301
AcsI	RAATTY	2 cut(s)	273, 331
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	5 cut(s)	20, 79, 191, 272, 329
AluBI	AGCT	3 cut(s)	62, 97, 143
AluI	AGCT	3 cut(s)	62, 97, 143
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	2 cut(s)	273, 331
Asp700I	GAANNNNTTC	1 cut(s)	27
BarI	GAAGNNNNNNTAC	2 cut(s)	46, 78
BbsI	GAAGAC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	3 cut(s)	83, 219, 228
BfaI	CTAG	2 cut(s)	66, 165
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
BmsI	GCATC	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	222
Bsa29I	ATCGAT	1 cut(s)	223
BsaAI	YACGTR	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	204
BseCI	ATCGAT	1 cut(s)	223
BseGI	GGATG	1 cut(s)	4
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	159
BshVI	ATCGAT	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	301
Bsp1407I	TGTACA	1 cut(s)	241
BspDI	ATCGAT	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	204
BsrGI	TGTACA	1 cut(s)	241
BstAUI	TGTACA	1 cut(s)	241
BstBAI	YACGTR	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	4
BstV1I	GCAGC	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	222
Bsu15I	ATCGAT	1 cut(s)	223
BsuTUI	ATCGAT	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	4
Cac8I	GCNNGC	1 cut(s)	95
ClaI	ATCGAT	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	242
CviJI	RGCY	5 cut(s)	62, 97, 143, 294, 305
CviKI_1	RGCY	5 cut(s)	62, 97, 143, 294, 305
CviQI	GTAC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	234
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	3 cut(s)	52, 249, 291
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
Fnu4HI	GCNGC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	2 cut(s)	66, 165
GluI	GCNGC	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	1 cut(s)	170
HpaI	GTTAAC	1 cut(s)	42
Hpy166II	GTNNAC	2 cut(s)	42, 242
Hpy188III	TCNNGA	2 cut(s)	66, 212
Hpy8I	GTNNAC	2 cut(s)	42, 242
HpyCH4IV	ACGT	2 cut(s)	108, 300
HpyCH4V	TGCA	3 cut(s)	4, 140, 150
HpySE526I	ACGT	2 cut(s)	108, 300
KspAI	GTTAAC	1 cut(s)	42
LpnPI	CCDG	2 cut(s)	187, 225
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	2 cut(s)	66, 165
MaeII	ACGT	2 cut(s)	108, 300
MaeIII	GTNAC	2 cut(s)	167, 257
MboII	GAAGA	3 cut(s)	32, 95, 227
MluCI	AATT	3 cut(s)	47, 273, 331
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	1 cut(s)	170
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	2 cut(s)	41, 337
NmuCI	GTSAC	1 cut(s)	167
NsiI	ATGCAT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	27
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Ppu21I	YACGTR	1 cut(s)	109
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	41, 337
SatI	GCNGC	1 cut(s)	141
SchI	GAGTC	1 cut(s)	164
SetI	ASST	8 cut(s)	38, 64, 99, 111, 115, 145, 162, 303
SfaNI	GCATC	1 cut(s)	13
SgeI	CNNG	8 cut(s)	78, 106, 119, 177, 186, 224, 264, 313
Sse9I	AATT	3 cut(s)	47, 273, 331
SspI	AATATT	1 cut(s)	75
SspMI	CTAG	2 cut(s)	66, 165
TaiI	ACGT	2 cut(s)	111, 303
TaqI	TCGA	1 cut(s)	223
TasI	AATT	3 cut(s)	47, 273, 331
TatI	WGTACW	1 cut(s)	241
Tru1I	TTAA	2 cut(s)	41, 337
Tru9I	TTAA	2 cut(s)	41, 337
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	167
Van91I	CCANNNNNTGG	1 cut(s)	301
XapI	RAATTY	2 cut(s)	273, 331
XbaI	TCTAGA	1 cut(s)	65
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	2 cut(s)	66, 165
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.