Prupe.1G584300_v2.0.a1

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
47434126 .. 47438705
4580 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G584300.4

Sequence Viewer

Length: 1419 bp
ATGCCTCGTACGTCCACACTCGATTGTCCAGGTTGCCCTCCACTTCGAGCTCTAACCTTCGACGAGCTTGGTCTCATAAAAGTTGTTGAAGCTCGAGGTAAGCAAGGAAGAGCAGAACCTAAGGTGGTTGAGAGGTGGGGCGACCCGGATTCCTCTAAATGCGTGCTCGCCGCCTCTATCGATGACCGAAATTCTGACCCATTACTAGCTGTTGCAAGAAGAAATGGCACGGTTGAAGTTCTTAATCCTCTTAATGGGGATCTCCGTTTCTCAGTCTCCAATGCCAGTATTAATGGTGTTCAGTCTGAAGATGACCCCGTTGCTGGATTGCATTTATTTGCCAAAAAGAAGTCGGAATTGGCTTCTAGGTCTTGCACTTTGCTTACGTGTACAACAAAAGGAAATGCAAGCATAAGATCCTTTGAAGTGAATAAATCAGCAGCTGATGTTGCTTCTACTGGGTCTTCAAGAACATGGAGTGTAGGTGGTGGCGGCAGTATTTTATGTTCTAAAGTGGATGGAAGTGAAAACTATTTTTTATCGGGAGGGAAGCGTGTTGAGATGAATGTCTGGGATCTTGAAAGCTGTGCCAAGATTTGGACAGCAAAACCTCCTCCTAAAAACAGCCTTGGTATCTTTACCCCAACTTGGTTCACATCTGCCACATTTTTGAGTAAAGATGATCATCGTAAATTTGTGGCTGGCACCAACAGCCATGAGGTTCGTCTTTTTGACATTTCTGCTCAGCGAAGACCTGTCATATCATTTGATTTTCGGGAGACTGCTATTAAATCTGTTGCTGAAGATCTAGATGGCTATACCATCTACGTAGGGAATGGATCTGGGGACCTCGCTTCTTTTGACATCCGCACAGGTAAATTGTTAGGTTGCTTTTTGGGGAAGTGTTCAGGTAGTATAAGATCCATAGCAAGGCACCCTGAGTTTCCAGTGATAGCATCATGTGGATTGGATAGCTATCTACGGCTTTGGAATGTGAAGACGCGGCAACTACTTTCCGCTGTTCACCTGAAGCAGCATCTGACAAATGTTCTTTTTGATTCCAATTTTGCTGATGAAGAAGCAGAAATTGCCCATTCTGCAGCCGATTGGCCGCTGCATGAAGATGAGAGAGATGAGGGCAAAACACCACCTGTGAAAAGGAAGAAATCAAAGGAAAAGAAAGGAATCAAGAAGGAAGCTGAAGCAAAAAGTGGAAACAGGGAAGATGAGAGAGATGAGCCGCTGCATGAAGATGAGAGAGATGAGGGCGAAACACCACCTGTGAAAAGGAAGAAATCAAAGGAAAAGAAAGGAATCAAGAAGGAAGCTGAAGCAAAAAGTGGAAACAAGGAATCTTCTGAAGAATATGGAGGCAAGAAGGTGAAATCCAAGAAAAGTAGCAAAAGATTAAAAATGTGA

Protein Analysis

473

Amino Acids

51.8

Weight (kDa)

8.95

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 704, 933
AccB7I CCANNNNNTGG 1 cut(s) 597
AccII CGCG 1 cut(s) 1003
AciI CCGC 7 cut(s) 171, 492, 868, 1003, 1017, 1112, 1241
AclWI GGATC 5 cut(s) 267, 411, 582, 847, 915
AcoI YGGCCR 1 cut(s) 1109
AcsI RAATTY 2 cut(s) 190, 692
AcuI CTGAAG 6 cut(s) 327, 822, 1049, 1221, 1350, 1380
AfaI GTAC 2 cut(s) 10, 391
AfiI CCNNNNNNNGG 5 cut(s) 254, 323, 597, 648, 930
AflIII ACRYGT 1 cut(s) 386
AgsI TTSAA 5 cut(s) 89, 236, 425, 468, 581
AjnI CCWGG 1 cut(s) 28
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AluBI AGCT 9 cut(s) 50, 67, 92, 209, 443, 585, 975, 1199, 1328
AluI AGCT 9 cut(s) 50, 67, 92, 209, 443, 585, 975, 1199, 1328
Alw21I GWGCWC 2 cut(s) 52, 168
Alw26I GTCTC 3 cut(s) 77, 280, 773
AlwI GGATC 5 cut(s) 267, 411, 582, 847, 915
AlwNI CAGNNNCTG 2 cut(s) 443, 1039
Ama87I CYCGRG 1 cut(s) 93
AoxI GGCC 1 cut(s) 1109
ApeKI GCWGC 5 cut(s) 440, 1033, 1100, 1114, 1243
ApoI RAATTY 2 cut(s) 190, 692
AseI ATTAAT 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 847
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 2 cut(s) 1016, 1393
AvaI CYCGRG 1 cut(s) 93
AvaII GGWCC 1 cut(s) 847
AxyI CCTNAGG 1 cut(s) 120
BanI GGYRCC 2 cut(s) 704, 933
BanII GRGCYC 1 cut(s) 52
BbsI GAAGAC 3 cut(s) 456, 757, 1004
Bbv12I GWGCWC 2 cut(s) 52, 168
BbvI GCAGC 5 cut(s) 452, 1045, 1101, 1112, 1230
BccI CCATC 3 cut(s) 512, 806, 830
BceAI ACGGC 1 cut(s) 998
BciT130I CCWGG 1 cut(s) 30
BclI TGATCA 1 cut(s) 682
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 3 cut(s) 77, 280, 773
BfaI CTAG 3 cut(s) 206, 366, 809
BfmI CTRYAG 1 cut(s) 1098
BglII AGATCT 1 cut(s) 805
BlpI GCTNAGC 1 cut(s) 744
Bme1390I CCNGG 2 cut(s) 30, 146
Bme18I GGWCC 1 cut(s) 847
BmeT110I CYCGRG 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 847
BmiI GGNNCC 3 cut(s) 706, 848, 935
BmrFI CCNGG 2 cut(s) 30, 146
BmrI ACTGGG 1 cut(s) 468
BmsI GCATC 2 cut(s) 965, 1045
BmuI ACTGGG 1 cut(s) 468
BpiI GAAGAC 3 cut(s) 456, 757, 1004
Bpu1102I GCTNAGC 1 cut(s) 744
BpuMI CCSGG 1 cut(s) 146
Bsa29I ATCGAT 1 cut(s) 180
BsaAI YACGTR 2 cut(s) 387, 829
BsaBI GATNNNNATC 2 cut(s) 684, 975
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 628
BsaXI ACNNNNNCTCC 2 cut(s) 469, 499
Bsc4I CCNNNNNNNGG 5 cut(s) 254, 323, 597, 648, 930
Bse1I ACTGG 3 cut(s) 285, 463, 947
Bse21I CCTNAGG 1 cut(s) 120
Bse8I GATNNNNATC 2 cut(s) 684, 975
BseBI CCWGG 1 cut(s) 30
BseCI ATCGAT 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 628
BseGI GGATG 2 cut(s) 523, 864
BseJI GATNNNNATC 2 cut(s) 684, 975
BseLI CCNNNNNNNGG 5 cut(s) 254, 323, 597, 648, 930
BseMII CTCAG 3 cut(s) 285, 758, 930
BseNI ACTGG 3 cut(s) 285, 463, 947
BseRI GAGGAG 1 cut(s) 603
BseXI GCAGC 5 cut(s) 452, 1045, 1101, 1112, 1230
Bsh1236I CGCG 1 cut(s) 1003
BshFI GGCC 1 cut(s) 1111
BshNI GGYRCC 2 cut(s) 704, 933
BshVI ATCGAT 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 52, 168
BsiHKCI CYCGRG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 146
BsiWI CGTACG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 860
BslI CCNNNNNNNGG 5 cut(s) 254, 323, 597, 648, 930
BsmAI GTCTC 3 cut(s) 77, 280, 773
BsmFI GGGAC 1 cut(s) 860
BsnI GGCC 1 cut(s) 1111
Bso31I GGTCTC 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 93
Bsp1286I GDGCHC 2 cut(s) 52, 168
Bsp1407I TGTACA 1 cut(s) 389
Bsp143I GATC 7 cut(s) 259, 416, 574, 682, 805, 839, 920
Bsp1720I GCTNAGC 1 cut(s) 744
BspACI CCGC 7 cut(s) 171, 492, 868, 1003, 1017, 1112, 1241
BspANI GGCC 1 cut(s) 1111
BspCNI CTCAG 3 cut(s) 284, 757, 931
BspDI ATCGAT 1 cut(s) 180
BspFNI CGCG 1 cut(s) 1003
BspLI GGNNCC 3 cut(s) 706, 848, 935
BspMAI CTGCAG 1 cut(s) 1102
BspPI GGATC 5 cut(s) 267, 411, 582, 847, 915
BspQI GCTCTTC 1 cut(s) 103
BspT107I GGYRCC 2 cut(s) 704, 933
BspTNI GGTCTC 1 cut(s) 77
BsrGI TGTACA 1 cut(s) 389
BsrI ACTGG 3 cut(s) 285, 463, 947
BssECI CCNNGG 1 cut(s) 628
BssMI GATC 7 cut(s) 259, 416, 574, 682, 805, 839, 920
BssT1I CCWWGG 1 cut(s) 628
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 1 cut(s) 103
BstAPI GCANNNNNTGC 1 cut(s) 1088
BstAUI TGTACA 1 cut(s) 389
BstBAI YACGTR 2 cut(s) 387, 829
BstC8I GCNNGC 4 cut(s) 164, 168, 409, 703
BstDEI CTNAG 4 cut(s) 120, 271, 744, 939
BstF5I GGATG 2 cut(s) 523, 864
BstFNI CGCG 1 cut(s) 1003
BstKTI GATC 7 cut(s) 262, 419, 577, 685, 808, 842, 923
BstMAI GTCTC 3 cut(s) 77, 280, 773
BstMBI GATC 7 cut(s) 259, 416, 574, 682, 805, 839, 920
BstMWI GCNNNNNNNGC 4 cut(s) 449, 711, 1088, 1097
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 2 cut(s) 28, 144
BstSFI CTRYAG 1 cut(s) 1098
BstSNI TACGTA 1 cut(s) 829
BstUI CGCG 1 cut(s) 1003
BstV1I GCAGC 5 cut(s) 452, 1045, 1101, 1112, 1230
BstV2I GAAGAC 3 cut(s) 456, 757, 1004
BstX2I RGATCY 6 cut(s) 259, 416, 574, 805, 839, 920
BstYI RGATCY 6 cut(s) 259, 416, 574, 805, 839, 920
Bsu15I ATCGAT 1 cut(s) 180
Bsu36I CCTNAGG 1 cut(s) 120
BsuRI GGCC 1 cut(s) 1111
BsuTUI ATCGAT 1 cut(s) 180
BtsCI GGATG 2 cut(s) 523, 864
BtsIMutI CAGTG 1 cut(s) 954
Cac8I GCNNGC 4 cut(s) 164, 168, 409, 703
CaiI CAGNNNCTG 2 cut(s) 443, 1039
Cfr13I GGNCC 1 cut(s) 847
ClaI ATCGAT 1 cut(s) 180
CseI GACGC 1 cut(s) 1009
Csp6I GTAC 2 cut(s) 9, 390
CviAII CATG 5 cut(s) 474, 716, 960, 1118, 1247
CviQI GTAC 2 cut(s) 9, 390
DdeI CTNAG 4 cut(s) 120, 271, 744, 939
DpnI GATC 7 cut(s) 261, 418, 576, 684, 807, 841, 922
DpnII GATC 7 cut(s) 259, 416, 574, 682, 805, 839, 920
EaeI YGGCCR 1 cut(s) 1109
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 50
Eco105I TACGTA 1 cut(s) 829
Eco130I CCWWGG 1 cut(s) 628
Eco24I GRGCYC 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 847
Eco53kI GAGCTC 1 cut(s) 50
Eco57I CTGAAG 6 cut(s) 327, 822, 1049, 1221, 1350, 1380
Eco81I CCTNAGG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 847
EcoRII CCWGG 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 628
EcoT38I GRGCYC 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 628
FaeI CATG 5 cut(s) 477, 719, 963, 1121, 1250
FaqI GGGAC 1 cut(s) 860
FatI CATG 5 cut(s) 473, 715, 959, 1117, 1246
FbaI TGATCA 1 cut(s) 682
FokI GGATG 2 cut(s) 530, 851
FriOI GRGCYC 1 cut(s) 52
FspBI CTAG 3 cut(s) 206, 366, 809
HaeIII GGCC 1 cut(s) 1111
HapII CCGG 1 cut(s) 146
HgaI GACGC 1 cut(s) 1009
Hin1II CATG 5 cut(s) 477, 719, 963, 1121, 1250
HinfI GANTC 5 cut(s) 149, 1058, 1185, 1314, 1352
HpaII CCGG 1 cut(s) 146
HphI GGTGA 2 cut(s) 1016, 1393
Hpy166II GTNNAC 4 cut(s) 15, 390, 654, 1024
Hpy188I TCNGA 5 cut(s) 196, 307, 355, 1041, 1360
Hpy188III TCNNGA 7 cut(s) 468, 543, 578, 776, 809, 1189, 1318
Hpy8I GTNNAC 4 cut(s) 15, 390, 654, 1024
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 4 cut(s) 67, 1186, 1315, 1372
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 3 cut(s) 11, 386, 828
HpyCH4V TGCA 7 cut(s) 215, 331, 375, 407, 1100, 1117, 1246
HpyF10VI GCNNNNNNNGC 4 cut(s) 449, 711, 1088, 1097
HpyF3I CTNAG 4 cut(s) 120, 271, 744, 939
HpySE526I ACGT 3 cut(s) 11, 386, 828
Hsp92II CATG 5 cut(s) 477, 719, 963, 1121, 1250
Ksp22I TGATCA 1 cut(s) 682
Kzo9I GATC 7 cut(s) 259, 416, 574, 682, 805, 839, 920
LguI GCTCTTC 1 cut(s) 103
Lsp1109I GCAGC 5 cut(s) 452, 1045, 1101, 1112, 1230
LweI GCATC 2 cut(s) 965, 1045
MaeI CTAG 3 cut(s) 206, 366, 809
MaeII ACGT 3 cut(s) 11, 386, 828
MalI GATC 7 cut(s) 261, 418, 576, 684, 807, 841, 922
MboI GATC 7 cut(s) 259, 416, 574, 682, 805, 839, 920
MflI RGATCY 6 cut(s) 259, 416, 574, 805, 839, 920
MhlI GDGCHC 2 cut(s) 52, 168
MluCI AATT 6 cut(s) 190, 356, 692, 878, 1063, 1086
MmeI TCCRAC 1 cut(s) 333
MseI TTAA 5 cut(s) 243, 252, 291, 789, 1409
MslI CAYNNNNRTG 2 cut(s) 1122, 1251
MspA1I CMGCKG 4 cut(s) 443, 1019, 1114, 1243
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 2 cut(s) 30, 146
MvaI CCWGG 1 cut(s) 30
MvnI CGCG 1 cut(s) 1003
MwoI GCNNNNNNNGC 4 cut(s) 449, 711, 1088, 1097
NciI CCSGG 1 cut(s) 146
NdeII GATC 7 cut(s) 259, 416, 574, 682, 805, 839, 920
NlaIII CATG 5 cut(s) 477, 719, 963, 1121, 1250
NlaIV GGNNCC 3 cut(s) 706, 848, 935
PaeR7I CTCGAG 1 cut(s) 93
PciSI GCTCTTC 1 cut(s) 103
PfeI GAWTC 5 cut(s) 149, 1058, 1185, 1314, 1352
Pfl23II CGTACG 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 597
Ppu21I YACGTR 2 cut(s) 387, 829
PpuMI RGGWCCY 1 cut(s) 847
PshBI ATTAAT 1 cut(s) 291
Psp124BI GAGCTC 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 847
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspLI CGTACG 1 cut(s) 8
PspN4I GGNNCC 3 cut(s) 706, 848, 935
PspPI GGNCC 1 cut(s) 847
PspPPI RGGWCCY 1 cut(s) 847
PspXI VCTCGAGB 1 cut(s) 93
PsrI GAACNNNNNNTAC 2 cut(s) 490, 522
PstI CTGCAG 1 cut(s) 1102
PstNI CAGNNNCTG 2 cut(s) 443, 1039
PsuI RGATCY 6 cut(s) 259, 416, 574, 805, 839, 920
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 2 cut(s) 10, 391
RsaNI GTAC 2 cut(s) 9, 390
RseI CAYNNNNRTG 2 cut(s) 1122, 1251
SacI GAGCTC 1 cut(s) 52
SapI GCTCTTC 1 cut(s) 103
SaqAI TTAA 5 cut(s) 243, 252, 291, 789, 1409
Sau3AI GATC 7 cut(s) 259, 416, 574, 682, 805, 839, 920
Sau96I GGNCC 1 cut(s) 847
ScrFI CCNGG 2 cut(s) 30, 146
SduI GDGCHC 2 cut(s) 52, 168
SfaNI GCATC 2 cut(s) 965, 1045
SfcI CTRYAG 1 cut(s) 1098
Sfr274I CTCGAG 1 cut(s) 93
SinI GGWCC 1 cut(s) 847
SlaI CTCGAG 1 cut(s) 93
SmiMI CAYNNNNRTG 2 cut(s) 1122, 1251
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
SnaBI TACGTA 1 cut(s) 829
Sse9I AATT 6 cut(s) 190, 356, 692, 878, 1063, 1086
SsiI CCGC 7 cut(s) 171, 492, 868, 1003, 1017, 1112, 1241
SspMI CTAG 3 cut(s) 206, 366, 809
SstI GAGCTC 1 cut(s) 52
StyD4I CCNGG 2 cut(s) 28, 144
StyI CCWWGG 1 cut(s) 628
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 3 cut(s) 14, 389, 831
TaqI TCGA 5 cut(s) 21, 46, 60, 94, 180
TaqII GACCGA 1 cut(s) 201
TasI AATT 6 cut(s) 190, 356, 692, 878, 1063, 1086
TatI WGTACW 1 cut(s) 389
TauI GCSGC 5 cut(s) 173, 495, 1006, 1114, 1243
TfiI GAWTC 5 cut(s) 149, 1058, 1185, 1314, 1352
Tru1I TTAA 5 cut(s) 243, 252, 291, 789, 1409
Tru9I TTAA 5 cut(s) 243, 252, 291, 789, 1409
TscAI CASTG 1 cut(s) 954
TseI GCWGC 5 cut(s) 440, 1033, 1100, 1114, 1243
TspDTI ATGAA 4 cut(s) 578, 1089, 1134, 1263
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 1 cut(s) 954
Van91I CCANNNNNTGG 1 cut(s) 597
VpaK11BI GGWCC 1 cut(s) 847
VspI ATTAAT 1 cut(s) 291
XapI RAATTY 2 cut(s) 190, 692
XbaI TCTAGA 1 cut(s) 808
XhoI CTCGAG 1 cut(s) 93
XspI CTAG 3 cut(s) 206, 366, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.