Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007269

Physical Location & Seq

Genomic Coordinates Forward (+)

58068356 .. 58072190

Gene Structure 3835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00264420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGCCTCGCACCACCACACTGGAGTGCCCCGGTTGCCCTCCACTTCGGGCCTTGACCTTCGACGAGCTTGGTCTCATTAAAGTTACTGAAGCTCTGAGTAAGCAAGGAGGAGTTCCCAAGATGGTAGACAGATGGGGTGACCCGGATGCCTCGAAATGCGTGCTCGCCGCCTCCATGGATGACCGGAAGTTCGACCCTTTACTAGCTGTTTCGAGAAAGAATGGCACGATTGAGGTTCTTAATCCTCTTAATGGTGATCTCCATTTTTCGGTTTCGAATGTCAGTGAAAATGGTGTTCAGCCTGGAGAGGATGCTGTTTCTGGGTTGCATTTATTTGCGAAACAAAATTTGGAACTAGCTTCTAGGTCTTGCACTTTGCTCACATGTACAACAAAAGGAAATGCAAGCATCAGAGCTTATGAAGTGACTAAATCAGCTGCAGATGTCACCTCTACTGGATCTTCAAGAACATGGAATGTATGTGCTGGTGGTGATATCTTATGTTCTAAAGTAGACGGTGGTGAAAGCTATTCTTTGTTCGGAGGGAAGCGCGTCGAAATGAATGTGTGGGATCTTGAAAACTGTGCCAAGATTTGGACAGCAAAATCTGTTCGTCTCTATGACATTTCTGCTCAGCGGAGACCTGTCATAACAGTTAATTTCCGGGAGACCCCTATCAAAGCTGTAGCAGAGGATTTGGATGGCTATACAATCTATATAGGGAATGGATCTGGTGATCTTGCTTCTGTAGATATGCGTACAGGGAAATTGCTAGGATGCTTTTTGGGAAAATGCTCTGGTAGTATAAGATCCATAGCCAGGCACCCAGAATTTCCAGTTATAGCATCATGTGGATTGGATAGTTATCTACGCGTTTGGAATGTAAAGACACGGGAACTACTCTCTGCGGTTTTCCTGAAGCAGCATCTAACAAATGTTCTTTTTGATTCAAATTTTGCTGATGAAGAAACCAAAGTTACCCTTCCTGCAGCGGATCGATTGCATGAGGAAGAGCATATTGCACCTGGGACTCCTTGTGAAGATGATGGTGAAACATTACCCGTGAAAAAGAAAAAATCTAAAGAAAAGAAAAGAAGCAAGGAAGCAAAAGCAGAGAGTGGAAACAAGGAAGTTTCTGAAGAAAATGGAGGCAAGAAGTCAAAATCCAAGAAAAGCAGCAAAAGATTAAAACGGGAAAATCTTGATGACGAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

405

Amino Acids

44.15

Weight (kDa)

7.89

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29320 AT1G29320
fragaria_vesca	FvH4_5g07760 FvH4_5g07760 FvH4_5g07760 FvH4_5g07760
malus_domestica	MD06G1147200.v1.1 MD14G1161100.v1.1
prunus_persica	Prupe.1G584300_v2.0.a1 Prupe.1G584300_v2.0.a1 Prupe.1G584300_v2.0.a1 Prupe.1G584300_v2.0.a1
pyrus_communis	pycom14g13400
rosa_chinensis	RchiOBHm_Chr7g0190661
rosa_laevigata	RLG00000004505
rosa_multiflora	Rmu_co8019692.1_g000001 Rmu_sc0006709.1_g000005 Rmu_sc0014053.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264420
rosa_rugosa	Rorug06G0506200
rosa_samantha	Rh7AG112800 Rh7BG115300 Rh7CG117800 Rh7DG116700
rosa_wichuraiana	Rw7G009840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	822
AccB7I	CCANNNNNTGG	1 cut(s)	594
AccI	GTMKAC	2 cut(s)	126, 513
AccII	CGCG	2 cut(s)	552, 873
AciI	CCGC	4 cut(s)	168, 637, 908, 992
AclWI	GGATC	5 cut(s)	466, 579, 736, 804, 1002
AcsI	RAATTY	3 cut(s)	346, 830, 952
AcuI	CTGAAG	3 cut(s)	108, 938, 1158
AfaI	GTAC	2 cut(s)	388, 760
AfiI	CCNNNNNNNGG	4 cut(s)	251, 268, 594, 819
AflIII	ACRYGT	2 cut(s)	383, 871
AgsI	TTSAA	3 cut(s)	465, 578, 951
AjnI	CCWGG	3 cut(s)	301, 818, 1024
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AleI	CACNNNNGTG	1 cut(s)	22
AluBI	AGCT	8 cut(s)	67, 92, 206, 359, 416, 437, 528, 683
AluI	AGCT	8 cut(s)	67, 92, 206, 359, 416, 437, 528, 683
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	4 cut(s)	77, 620, 634, 662
AlwI	GGATC	5 cut(s)	466, 579, 736, 804, 1002
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	4 cut(s)	437, 922, 989, 1176
ApoI	RAATTY	3 cut(s)	346, 830, 952
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspLEI	GCGC	1 cut(s)	552
AspS9I	GGNCC	1 cut(s)	48
AsuC2I	CCSGG	3 cut(s)	30, 143, 665
AsuHPI	GGTGA	7 cut(s)	149, 266, 439, 503, 533, 746, 1061
AsuII	TTCGAA	1 cut(s)	275
BaeGI	GKGCMC	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	822
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	4 cut(s)	424, 934, 1001, 1188
BccI	CCATC	4 cut(s)	115, 126, 695, 1040
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	3 cut(s)	303, 820, 1026
BcnI	CCSGG	3 cut(s)	30, 143, 665
BcoDI	GTCTC	4 cut(s)	77, 620, 634, 662
BfaI	CTAG	4 cut(s)	203, 356, 363, 773
BfmI	CTRYAG	4 cut(s)	438, 684, 747, 987
BisI	GCNGC	5 cut(s)	168, 438, 923, 990, 1177
BlpI	GCTNAGC	1 cut(s)	633
BlsI	GCNGC	5 cut(s)	169, 439, 924, 991, 1178
Bme1390I	CCNGG	6 cut(s)	30, 143, 303, 665, 820, 1026
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	824
BmrFI	CCNGG	6 cut(s)	30, 143, 303, 665, 820, 1026
BmsI	GCATC	6 cut(s)	136, 301, 417, 767, 854, 934
BpmI	CTGGAG	2 cut(s)	41, 324
Bpu1102I	GCTNAGC	1 cut(s)	633
Bpu14I	TTCGAA	1 cut(s)	275
BpuMI	CCSGG	3 cut(s)	30, 143, 665
Bsa29I	ATCGAT	1 cut(s)	997
BsaBI	GATNNNNATC	1 cut(s)	864
BsaI	GGTCTC	3 cut(s)	77, 634, 662
BsaJI	CCNNGG	3 cut(s)	28, 174, 1025
BsaWI	WCCGGW	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	4 cut(s)	251, 268, 594, 819
Bse1I	ACTGG	3 cut(s)	24, 460, 836
Bse8I	GATNNNNATC	1 cut(s)	864
BseBI	CCWGG	3 cut(s)	303, 820, 1026
BseCI	ATCGAT	1 cut(s)	997
BseDI	CCNNGG	3 cut(s)	28, 174, 1025
BseGI	GGATG	5 cut(s)	151, 184, 316, 706, 782
BseJI	GATNNNNATC	1 cut(s)	864
BseLI	CCNNNNNNNGG	4 cut(s)	251, 268, 594, 819
BseMII	CTCAG	2 cut(s)	86, 647
BseNI	ACTGG	3 cut(s)	24, 460, 836
BseRI	GAGGAG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	29
BseXI	GCAGC	4 cut(s)	424, 934, 1001, 1188
Bsh1236I	CGCG	2 cut(s)	552, 873
BshFI	GGCC	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	822
BshVI	ATCGAT	1 cut(s)	997
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	4 cut(s)	30, 143, 184, 664
BslFI	GGGAC	1 cut(s)	1042
BslI	CCNNNNNNNGG	4 cut(s)	251, 268, 594, 819
BsmAI	GTCTC	4 cut(s)	77, 620, 634, 662
BsmBI	CGTCTC	1 cut(s)	620
BsmFI	GGGAC	1 cut(s)	1042
BsnI	GGCC	1 cut(s)	50
Bso31I	GGTCTC	3 cut(s)	77, 634, 662
Bsp119I	TTCGAA	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	29, 165
Bsp1407I	TGTACA	1 cut(s)	386
Bsp143I	GATC	7 cut(s)	256, 458, 571, 728, 736, 809, 994
Bsp1720I	GCTNAGC	1 cut(s)	633
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	4 cut(s)	168, 637, 908, 992
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	87, 646
BspDI	ATCGAT	1 cut(s)	997
BspFNI	CGCG	2 cut(s)	552, 873
BspLI	GGNNCC	1 cut(s)	824
BspMAI	CTGCAG	2 cut(s)	442, 991
BspPI	GGATC	5 cut(s)	466, 579, 736, 804, 1002
BspQI	GCTCTTC	1 cut(s)	1005
BspT104I	TTCGAA	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	822
BspTNI	GGTCTC	3 cut(s)	77, 634, 662
BsrGI	TGTACA	1 cut(s)	386
BsrI	ACTGG	3 cut(s)	24, 460, 836
BssECI	CCNNGG	3 cut(s)	28, 174, 1025
BssMI	GATC	7 cut(s)	256, 458, 571, 728, 736, 809, 994
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	3 cut(s)	303, 820, 1026
Bst4CI	ACNGT	3 cut(s)	518, 584, 655
Bst6I	CTCTTC	1 cut(s)	1005
BstAUI	TGTACA	1 cut(s)	386
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	161, 165, 406
BstDEI	CTNAG	2 cut(s)	95, 633
BstDSI	CCRYGG	1 cut(s)	174
BstEII	GGTNACC	1 cut(s)	137
BstF5I	GGATG	5 cut(s)	151, 184, 316, 706, 782
BstFNI	CGCG	2 cut(s)	552, 873
BstHHI	GCGC	1 cut(s)	552
BstKTI	GATC	7 cut(s)	259, 461, 574, 731, 739, 812, 997
BstMAI	GTCTC	4 cut(s)	77, 620, 634, 662
BstMBI	GATC	7 cut(s)	256, 458, 571, 728, 736, 809, 994
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	3 cut(s)	303, 820, 1026
BstNSI	RCATGY	1 cut(s)	387
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	6 cut(s)	28, 141, 301, 663, 818, 1024
BstSFI	CTRYAG	4 cut(s)	438, 684, 747, 987
BstSLI	GKGCMC	1 cut(s)	29
BstUI	CGCG	2 cut(s)	552, 873
BstV1I	GCAGC	4 cut(s)	424, 934, 1001, 1188
BstX2I	RGATCY	4 cut(s)	458, 571, 728, 809
BstXI	CCANNNNNNTGG	1 cut(s)	19
BstYI	RGATCY	4 cut(s)	458, 571, 728, 809
Bsu15I	ATCGAT	1 cut(s)	997
BsuRI	GGCC	1 cut(s)	50
BsuTUI	ATCGAT	1 cut(s)	997
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	5 cut(s)	151, 184, 316, 706, 782
BtsIMutI	CAGTG	2 cut(s)	17, 289
Cac8I	GCNNGC	3 cut(s)	161, 165, 406
CfoI	GCGC	1 cut(s)	552
Cfr13I	GGNCC	1 cut(s)	48
ClaI	ATCGAT	1 cut(s)	997
CseI	GACGC	1 cut(s)	541
Csp6I	GTAC	2 cut(s)	387, 759
CviAII	CATG	5 cut(s)	175, 384, 471, 849, 1004
CviQI	GTAC	2 cut(s)	387, 759
DdeI	CTNAG	2 cut(s)	95, 633
DpnI	GATC	7 cut(s)	258, 460, 573, 730, 738, 811, 996
DpnII	GATC	7 cut(s)	256, 458, 571, 728, 736, 809, 994
Eam1104I	CTCTTC	1 cut(s)	1005
EarI	CTCTTC	1 cut(s)	1005
Eco130I	CCWWGG	1 cut(s)	174
Eco31I	GGTCTC	3 cut(s)	77, 634, 662
Eco32I	GATATC	1 cut(s)	496
Eco57I	CTGAAG	3 cut(s)	108, 938, 1158
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
EcoRII	CCWGG	3 cut(s)	301, 818, 1024
EcoRV	GATATC	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
Esp3I	CGTCTC	1 cut(s)	620
FaeI	CATG	5 cut(s)	178, 387, 474, 852, 1007
FalI	AAGNNNNNCTT	4 cut(s)	517, 549, 966, 998
FaqI	GGGAC	1 cut(s)	1042
FatI	CATG	5 cut(s)	174, 383, 470, 848, 1003
FblI	GTMKAC	2 cut(s)	126, 513
Fnu4HI	GCNGC	5 cut(s)	168, 438, 923, 990, 1177
FokI	GGATG	5 cut(s)	158, 191, 323, 713, 789
Fsp4HI	GCNGC	5 cut(s)	168, 438, 923, 990, 1177
FspBI	CTAG	4 cut(s)	203, 356, 363, 773
GlaI	GCGC	1 cut(s)	551
GluI	GCNGC	5 cut(s)	168, 438, 923, 990, 1177
GsuI	CTGGAG	2 cut(s)	41, 324
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	4 cut(s)	30, 143, 184, 664
HgaI	GACGC	1 cut(s)	541
HhaI	GCGC	1 cut(s)	552
Hin1II	CATG	5 cut(s)	178, 387, 474, 852, 1007
Hin6I	GCGC	1 cut(s)	550
HinP1I	GCGC	1 cut(s)	550
HinfI	GANTC	2 cut(s)	947, 1030
HpaII	CCGG	4 cut(s)	30, 143, 184, 664
HphI	GGTGA	7 cut(s)	149, 266, 439, 503, 533, 746, 1061
Hpy166II	GTNNAC	2 cut(s)	127, 514
Hpy188I	TCNGA	4 cut(s)	96, 413, 542, 1138
Hpy188III	TCNNGA	5 cut(s)	213, 465, 575, 916, 1202
Hpy8I	GTNNAC	2 cut(s)	127, 514
Hpy99I	CGWCG	2 cut(s)	65, 557
HpyAV	CCTTC	2 cut(s)	67, 992
HpyCH4III	ACNGT	3 cut(s)	518, 584, 655
HpyCH4V	TGCA	7 cut(s)	328, 372, 404, 440, 989, 1003, 1022
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	2 cut(s)	95, 633
Hsp92II	CATG	5 cut(s)	178, 387, 474, 852, 1007
HspAI	GCGC	1 cut(s)	550
Kzo9I	GATC	7 cut(s)	256, 458, 571, 728, 736, 809, 994
LguI	GCTCTTC	1 cut(s)	1005
Lsp1109I	GCAGC	4 cut(s)	424, 934, 1001, 1188
LweI	GCATC	6 cut(s)	136, 301, 417, 767, 854, 934
MaeI	CTAG	4 cut(s)	203, 356, 363, 773
MaeIII	GTNAC	5 cut(s)	82, 137, 424, 445, 976
MalI	GATC	7 cut(s)	258, 460, 573, 730, 738, 811, 996
MboI	GATC	7 cut(s)	256, 458, 571, 728, 736, 809, 994
MboII	GAAGA	5 cut(s)	453, 977, 1022, 1052, 1151
MflI	RGATCY	4 cut(s)	458, 571, 728, 809
MhlI	GDGCHC	2 cut(s)	29, 165
MluCI	AATT	6 cut(s)	346, 658, 767, 830, 952, 1211
MluI	ACGCGT	1 cut(s)	871
MlyI	GAGTC	1 cut(s)	1024
MseI	TTAA	5 cut(s)	78, 240, 249, 657, 1187
MslI	CAYNNNNRTG	1 cut(s)	22
MspA1I	CMGCKG	3 cut(s)	437, 637, 992
MspI	CCGG	4 cut(s)	30, 143, 184, 664
MspR9I	CCNGG	6 cut(s)	30, 143, 303, 665, 820, 1026
MvaI	CCWGG	3 cut(s)	303, 820, 1026
MvnI	CGCG	2 cut(s)	552, 873
MwoI	GCNNNNNNNGC	1 cut(s)	33
NciI	CCSGG	3 cut(s)	30, 143, 665
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	7 cut(s)	256, 458, 571, 728, 736, 809, 994
NlaIII	CATG	5 cut(s)	178, 387, 474, 852, 1007
NlaIV	GGNNCC	1 cut(s)	824
NmuCI	GTSAC	3 cut(s)	137, 424, 445
NspI	RCATGY	1 cut(s)	387
NspV	TTCGAA	1 cut(s)	275
OliI	CACNNNNGTG	1 cut(s)	22
PciI	ACATGT	1 cut(s)	383
PciSI	GCTCTTC	1 cut(s)	1005
PfeI	GAWTC	1 cut(s)	947
PflMI	CCANNNNNTGG	1 cut(s)	594
PfoI	TCCNGGA	1 cut(s)	663
PkrI	GCNGC	5 cut(s)	169, 439, 924, 991, 1178
PleI	GAGTC	1 cut(s)	1024
PpsI	GAGTC	1 cut(s)	1024
PscI	ACATGT	1 cut(s)	383
Psp6I	CCWGG	3 cut(s)	301, 818, 1024
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	3 cut(s)	301, 818, 1024
PspN4I	GGNNCC	1 cut(s)	824
PspPI	GGNCC	1 cut(s)	48
PstI	CTGCAG	2 cut(s)	442, 991
PsuI	RGATCY	4 cut(s)	458, 571, 728, 809
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	2 cut(s)	388, 760
RsaNI	GTAC	2 cut(s)	387, 759
RseI	CAYNNNNRTG	1 cut(s)	22
SapI	GCTCTTC	1 cut(s)	1005
SaqAI	TTAA	5 cut(s)	78, 240, 249, 657, 1187
SatI	GCNGC	5 cut(s)	168, 438, 923, 990, 1177
Sau3AI	GATC	7 cut(s)	256, 458, 571, 728, 736, 809, 994
Sau96I	GGNCC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	1024
ScrFI	CCNGG	6 cut(s)	30, 143, 303, 665, 820, 1026
SduI	GDGCHC	2 cut(s)	29, 165
SfaNI	GCATC	6 cut(s)	136, 301, 417, 767, 854, 934
SfcI	CTRYAG	4 cut(s)	438, 684, 747, 987
SfuI	TTCGAA	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	22
Sse9I	AATT	6 cut(s)	346, 658, 767, 830, 952, 1211
SsiI	CCGC	4 cut(s)	168, 637, 908, 992
SspMI	CTAG	4 cut(s)	203, 356, 363, 773
StyD4I	CCNGG	6 cut(s)	28, 141, 301, 663, 818, 1024
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	3 cut(s)	518, 584, 655
TaqI	TCGA	7 cut(s)	60, 152, 192, 212, 275, 555, 997
TasI	AATT	6 cut(s)	346, 658, 767, 830, 952, 1211
TatI	WGTACW	1 cut(s)	386
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	947
Tru1I	TTAA	5 cut(s)	78, 240, 249, 657, 1187
Tru9I	TTAA	5 cut(s)	78, 240, 249, 657, 1187
TscAI	CASTG	2 cut(s)	24, 289
TseFI	GTSAC	3 cut(s)	137, 424, 445
TseI	GCWGC	4 cut(s)	437, 922, 989, 1176
Tsp45I	GTSAC	3 cut(s)	137, 424, 445
TspDTI	ATGAA	3 cut(s)	435, 575, 978
TspRI	CASTG	2 cut(s)	24, 289
Van91I	CCANNNNNTGG	1 cut(s)	594
XapI	RAATTY	3 cut(s)	346, 830, 952
XceI	RCATGY	1 cut(s)	387
XmiI	GTMKAC	2 cut(s)	126, 513
XspI	CTAG	4 cut(s)	203, 356, 363, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.