Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8019692.1

Orthogroup ID

OG0007269

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 393

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8019692.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

atgcctcgtaccaccacactggagtgcccaggttgccctccacttcgggccttgaccttcgacgagcttggtctcattaaagttactgaagctcggagtaagcaaggaggagttcccaagatggtagagagatggggtgacccggatgcctcgaaatgcgtgctcgccgcctccatggatgaccggaagttcgatccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

66

Amino Acids

7.23

Weight (kDa)

6.15

Isoelectric Point (pI)

62.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29320 AT1G29320
fragaria_vesca	FvH4_5g07760 FvH4_5g07760 FvH4_5g07760 FvH4_5g07760
malus_domestica	MD06G1147200.v1.1 MD14G1161100.v1.1
prunus_persica	Prupe.1G584300_v2.0.a1 Prupe.1G584300_v2.0.a1 Prupe.1G584300_v2.0.a1 Prupe.1G584300_v2.0.a1
pyrus_communis	pycom14g13400
rosa_chinensis	RchiOBHm_Chr7g0190661
rosa_laevigata	RLG00000004505
rosa_multiflora	Rmu_co8019692.1_g000001 Rmu_sc0006709.1_g000005 Rmu_sc0014053.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264420
rosa_rugosa	Rorug06G0506200
rosa_samantha	Rh7AG112800 Rh7BG115300 Rh7CG117800 Rh7DG116700
rosa_wichuraiana	Rw7G009840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	168
AclWI	GGATC	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	28
AleI	CACNNNNGTG	1 cut(s)	22
AluBI	AGCT	2 cut(s)	67, 92
AluI	AGCT	2 cut(s)	67, 92
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	48
ArsI	GACNNNNNNTTYG	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	48
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	165
BccI	CCATC	2 cut(s)	115, 126
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	77
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	2 cut(s)	30, 143
BmgT120I	GGNCC	1 cut(s)	48
BmrFI	CCNGG	2 cut(s)	30, 143
BmsI	GCATC	1 cut(s)	136
BpmI	CTGGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	28, 174
BsaWI	WCCGGW	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	28, 174
BseGI	GGATG	2 cut(s)	151, 184
BseNI	ACTGG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	29
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	143, 184
BsmAI	GTCTC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	50
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	29, 165
Bsp143I	GATC	1 cut(s)	193
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	188
BspTNI	GGTCTC	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	28, 174
BssMI	GATC	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	161, 165
BstDSI	CCRYGG	1 cut(s)	174
BstEII	GGTNACC	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	151, 184
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	30
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	28, 141
BstSLI	GKGCMC	1 cut(s)	29
BstXI	CCANNNNNNTGG	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	151, 184
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	161, 165
Cfr13I	GGNCC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	3 cut(s)	50, 67, 92
CviKI_1	RGCY	3 cut(s)	50, 67, 92
CviQI	GTAC	1 cut(s)	9
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	1 cut(s)	178
FaiI	YATR	1 cut(s)	176
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	2 cut(s)	158, 191
Fsp4HI	GCNGC	1 cut(s)	168
GluI	GCNGC	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	2 cut(s)	143, 184
Hin1II	CATG	1 cut(s)	178
HpaII	CCGG	2 cut(s)	143, 184
HphI	GGTGA	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	96
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	193
LpnPI	CCDG	4 cut(s)	5, 15, 42, 156
LweI	GCATC	1 cut(s)	136
MaeIII	GTNAC	2 cut(s)	82, 137
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MhlI	GDGCHC	2 cut(s)	29, 165
MnlI	CCTC	5 cut(s)	15, 48, 101, 160, 181
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	22
MspI	CCGG	2 cut(s)	143, 184
MspR9I	CCNGG	2 cut(s)	30, 143
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	33
NciI	CCSGG	1 cut(s)	143
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	137
OliI	CACNNNNGTG	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	28
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	48
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
RseI	CAYNNNNRTG	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	1 cut(s)	48
ScrFI	CCNGG	2 cut(s)	30, 143
SduI	GDGCHC	2 cut(s)	29, 165
SetI	ASST	4 cut(s)	34, 59, 69, 94
SfaNI	GCATC	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	22
SsiI	CCGC	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	28, 141
StyI	CCWWGG	1 cut(s)	174
TaqI	TCGA	3 cut(s)	60, 152, 192
TauI	GCSGC	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	137
TspRI	CASTG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.