Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007269

Physical Location & Seq

Genomic Coordinates Reverse (-)

8826109 .. 8829867

Gene Structure 3759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG112800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCCTCGCACCACCACACTGGAGTGCCCAGGTTGCCCTCCACTTCGGGCCTTGACCTTCGACGAGCTTGGTCTCATTAAAGTTACTGAAGCTCGGAGTAAGCAAGGAGGAGATCCCAAGATGGTAGAGAGATGGGGTGACCCGGATGCCTCGAAATGCGTGCTCGCCGCCTCCATGGATGACCGGAAGTTCGACCCGTTACTAGCTGTTGCGAGAAAGAATGGCACGATTGAGGTTCTTAATCCTCTTAATGGTGATCTCCATTTTTCGGTTTCCAATGTCAGTGAAAATGGTGTTCAGCCTTTAGAGGATGCTGTTTCTGGGTTGCATTTATTTGCAAAACAAAATTTGGAACTAACTTCTAGGTCTTGCACTTTGCTCACATGTACAACGAAAGGAAATGCAAGCATCAGATCTTATGAAGTGACTAAATCAGCTGCAGATGTCACCTCTACTGGATCTTCAAGAACATGGAATGTATGTGCTGGTGAAACCAAAGTTACCCTTCCTGCAGCGGATCGATTGCATGAGGAAGAGCATATTGCACCTGGGACTCCTTGCGAAGATGATGGTGAAACAGTACCTGTGAAAAAGAAAAAATCTAGAGAAAAGAAAAGAAGCAAGAAGGAAGCAAAAGCAGAGAGTGGAAACAAGGAAGTTTCCGAAGAAAATGGAGGCAAGAAGTCAAAATCCAAGAAAAGCAGCAAAAGATTAAAACGGGAAAATCTTGATGACGAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

26.87

Weight (kDa)

8.39

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29320 AT1G29320
fragaria_vesca	FvH4_5g07760 FvH4_5g07760 FvH4_5g07760 FvH4_5g07760
malus_domestica	MD06G1147200.v1.1 MD14G1161100.v1.1
prunus_persica	Prupe.1G584300_v2.0.a1 Prupe.1G584300_v2.0.a1 Prupe.1G584300_v2.0.a1 Prupe.1G584300_v2.0.a1
pyrus_communis	pycom14g13400
rosa_chinensis	RchiOBHm_Chr7g0190661
rosa_laevigata	RLG00000004505
rosa_multiflora	Rmu_co8019692.1_g000001 Rmu_sc0006709.1_g000005 Rmu_sc0014053.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264420
rosa_rugosa	Rorug06G0506200
rosa_samantha	Rh7AG112800 Rh7BG115300 Rh7CG117800 Rh7DG116700
rosa_wichuraiana	Rw7G009840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	168, 515
AclWI	GGATC	3 cut(s)	107, 466, 525
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	2 cut(s)	388, 582
AfiI	CCNNNNNNNGG	2 cut(s)	251, 268
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	1 cut(s)	465
AjnI	CCWGG	2 cut(s)	28, 547
AleI	CACNNNNGTG	1 cut(s)	22
AluBI	AGCT	4 cut(s)	67, 92, 206, 437
AluI	AGCT	4 cut(s)	67, 92, 206, 437
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	3 cut(s)	107, 466, 525
AlwNI	CAGNNNCTG	1 cut(s)	584
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	3 cut(s)	437, 512, 702
ApoI	RAATTY	1 cut(s)	346
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspS9I	GGNCC	1 cut(s)	48
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	5 cut(s)	149, 266, 439, 500, 584
BaeGI	GKGCMC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	3 cut(s)	424, 524, 714
BccI	CCATC	3 cut(s)	115, 126, 563
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	2 cut(s)	30, 549
BcnI	CCSGG	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	3 cut(s)	203, 363, 603
BfmI	CTRYAG	2 cut(s)	438, 510
BglII	AGATCT	1 cut(s)	413
BisI	GCNGC	4 cut(s)	168, 438, 513, 703
BlsI	GCNGC	4 cut(s)	169, 439, 514, 704
Bme1390I	CCNGG	3 cut(s)	30, 143, 549
BmgT120I	GGNCC	1 cut(s)	48
BmrFI	CCNGG	3 cut(s)	30, 143, 549
BmsI	GCATC	3 cut(s)	136, 301, 417
BpmI	CTGGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	143
Bsa29I	ATCGAT	1 cut(s)	520
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	3 cut(s)	28, 174, 548
BsaWI	WCCGGW	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 268
Bse1I	ACTGG	2 cut(s)	24, 460
BseBI	CCWGG	2 cut(s)	30, 549
BseCI	ATCGAT	1 cut(s)	520
BseDI	CCNNGG	3 cut(s)	28, 174, 548
BseGI	GGATG	3 cut(s)	151, 184, 316
BseLI	CCNNNNNNNGG	2 cut(s)	251, 268
BseNI	ACTGG	2 cut(s)	24, 460
BseRI	GAGGAG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	29
BseXI	GCAGC	3 cut(s)	424, 524, 714
BshFI	GGCC	1 cut(s)	50
BshVI	ATCGAT	1 cut(s)	520
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	143, 184
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	2 cut(s)	251, 268
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	565
BsnI	GGCC	1 cut(s)	50
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	29, 165
Bsp1407I	TGTACA	1 cut(s)	386
Bsp143I	GATC	5 cut(s)	112, 256, 413, 458, 517
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	2 cut(s)	168, 515
BspANI	GGCC	1 cut(s)	50
BspDI	ATCGAT	1 cut(s)	520
BspMAI	CTGCAG	2 cut(s)	442, 514
BspPI	GGATC	3 cut(s)	107, 466, 525
BspQI	GCTCTTC	1 cut(s)	528
BspTNI	GGTCTC	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	386
BsrI	ACTGG	2 cut(s)	24, 460
BssECI	CCNNGG	3 cut(s)	28, 174, 548
BssMI	GATC	5 cut(s)	112, 256, 413, 458, 517
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	30, 549
Bst4CI	ACNGT	1 cut(s)	580
Bst6I	CTCTTC	1 cut(s)	528
BstAUI	TGTACA	1 cut(s)	386
BstC8I	GCNNGC	3 cut(s)	161, 165, 406
BstDSI	CCRYGG	1 cut(s)	174
BstEII	GGTNACC	1 cut(s)	137
BstF5I	GGATG	3 cut(s)	151, 184, 316
BstKTI	GATC	5 cut(s)	115, 259, 416, 461, 520
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	5 cut(s)	112, 256, 413, 458, 517
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	2 cut(s)	30, 549
BstNSI	RCATGY	1 cut(s)	387
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	3 cut(s)	28, 141, 547
BstSFI	CTRYAG	2 cut(s)	438, 510
BstSLI	GKGCMC	1 cut(s)	29
BstV1I	GCAGC	3 cut(s)	424, 524, 714
BstX2I	RGATCY	3 cut(s)	112, 413, 458
BstXI	CCANNNNNNTGG	1 cut(s)	19
BstYI	RGATCY	3 cut(s)	112, 413, 458
Bsu15I	ATCGAT	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	50
BsuTUI	ATCGAT	1 cut(s)	520
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	3 cut(s)	151, 184, 316
BtsIMutI	CAGTG	2 cut(s)	17, 289
Cac8I	GCNNGC	3 cut(s)	161, 165, 406
CaiI	CAGNNNCTG	1 cut(s)	584
Cfr13I	GGNCC	1 cut(s)	48
ClaI	ATCGAT	1 cut(s)	520
Csp6I	GTAC	2 cut(s)	387, 581
CviAII	CATG	4 cut(s)	175, 384, 471, 527
CviJI	RGCY	6 cut(s)	50, 67, 92, 206, 301, 437
CviKI_1	RGCY	6 cut(s)	50, 67, 92, 206, 301, 437
CviQI	GTAC	2 cut(s)	387, 581
DpnI	GATC	5 cut(s)	114, 258, 415, 460, 519
DpnII	GATC	5 cut(s)	112, 256, 413, 458, 517
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco130I	CCWWGG	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	28, 547
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	4 cut(s)	178, 387, 474, 530
FaiI	YATR	8 cut(s)	176, 385, 420, 472, 481, 528, 540, 742
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	4 cut(s)	174, 383, 470, 526
Fnu4HI	GCNGC	4 cut(s)	168, 438, 513, 703
FokI	GGATG	3 cut(s)	158, 191, 323
Fsp4HI	GCNGC	4 cut(s)	168, 438, 513, 703
FspBI	CTAG	3 cut(s)	203, 363, 603
GluI	GCNGC	4 cut(s)	168, 438, 513, 703
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	2 cut(s)	143, 184
Hin1II	CATG	4 cut(s)	178, 387, 474, 530
HinfI	GANTC	1 cut(s)	553
HpaII	CCGG	2 cut(s)	143, 184
HphI	GGTGA	5 cut(s)	149, 266, 439, 500, 584
Hpy188I	TCNGA	3 cut(s)	96, 413, 664
Hpy188III	TCNNGA	3 cut(s)	465, 603, 728
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	3 cut(s)	67, 515, 619
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4V	TGCA	8 cut(s)	328, 338, 372, 404, 440, 512, 526, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	178, 387, 474, 530
Kzo9I	GATC	5 cut(s)	112, 256, 413, 458, 517
LguI	GCTCTTC	1 cut(s)	528
Lsp1109I	GCAGC	3 cut(s)	424, 524, 714
LweI	GCATC	3 cut(s)	136, 301, 417
MaeI	CTAG	3 cut(s)	203, 363, 603
MaeIII	GTNAC	6 cut(s)	82, 137, 198, 424, 445, 499
MalI	GATC	5 cut(s)	114, 258, 415, 460, 519
MboI	GATC	5 cut(s)	112, 256, 413, 458, 517
MboII	GAAGA	4 cut(s)	453, 545, 575, 677
MflI	RGATCY	3 cut(s)	112, 413, 458
MhlI	GDGCHC	2 cut(s)	29, 165
MluCI	AATT	2 cut(s)	346, 737
MlyI	GAGTC	1 cut(s)	547
MseI	TTAA	4 cut(s)	78, 240, 249, 713
MslI	CAYNNNNRTG	1 cut(s)	22
MspA1I	CMGCKG	2 cut(s)	437, 515
MspI	CCGG	2 cut(s)	143, 184
MspR9I	CCNGG	3 cut(s)	30, 143, 549
MvaI	CCWGG	2 cut(s)	30, 549
MwoI	GCNNNNNNNGC	1 cut(s)	33
NciI	CCSGG	1 cut(s)	143
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	5 cut(s)	112, 256, 413, 458, 517
NlaIII	CATG	4 cut(s)	178, 387, 474, 530
NmuCI	GTSAC	3 cut(s)	137, 424, 445
NspI	RCATGY	1 cut(s)	387
OliI	CACNNNNGTG	1 cut(s)	22
PciI	ACATGT	1 cut(s)	383
PciSI	GCTCTTC	1 cut(s)	528
PkrI	GCNGC	4 cut(s)	169, 439, 514, 704
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
PscI	ACATGT	1 cut(s)	383
Psp6I	CCWGG	2 cut(s)	28, 547
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	2 cut(s)	28, 547
PspPI	GGNCC	1 cut(s)	48
PstI	CTGCAG	2 cut(s)	442, 514
PstNI	CAGNNNCTG	1 cut(s)	584
PsuI	RGATCY	3 cut(s)	112, 413, 458
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	2 cut(s)	388, 582
RsaNI	GTAC	2 cut(s)	387, 581
RseI	CAYNNNNRTG	1 cut(s)	22
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	4 cut(s)	78, 240, 249, 713
SatI	GCNGC	4 cut(s)	168, 438, 513, 703
Sau3AI	GATC	5 cut(s)	112, 256, 413, 458, 517
Sau96I	GGNCC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	547
ScrFI	CCNGG	3 cut(s)	30, 143, 549
SduI	GDGCHC	2 cut(s)	29, 165
SfaNI	GCATC	3 cut(s)	136, 301, 417
SfcI	CTRYAG	2 cut(s)	438, 510
SmiMI	CAYNNNNRTG	1 cut(s)	22
Sse9I	AATT	2 cut(s)	346, 737
SsiI	CCGC	2 cut(s)	168, 515
SspMI	CTAG	3 cut(s)	203, 363, 603
StyD4I	CCNGG	3 cut(s)	28, 141, 547
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	580
TaqI	TCGA	4 cut(s)	60, 152, 192, 520
TasI	AATT	2 cut(s)	346, 737
TatI	WGTACW	1 cut(s)	386
TauI	GCSGC	1 cut(s)	170
Tru1I	TTAA	4 cut(s)	78, 240, 249, 713
Tru9I	TTAA	4 cut(s)	78, 240, 249, 713
TscAI	CASTG	2 cut(s)	24, 289
TseFI	GTSAC	3 cut(s)	137, 424, 445
TseI	GCWGC	3 cut(s)	437, 512, 702
Tsp45I	GTSAC	3 cut(s)	137, 424, 445
TspDTI	ATGAA	1 cut(s)	435
TspRI	CASTG	2 cut(s)	24, 289
XapI	RAATTY	1 cut(s)	346
XbaI	TCTAGA	1 cut(s)	602
XceI	RCATGY	1 cut(s)	387
XspI	CTAG	3 cut(s)	203, 363, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.