Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007269

Physical Location & Seq

Genomic Coordinates Reverse (-)

9012611 .. 9016652

Gene Structure 4042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG117800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCCTCGCACCACCACACTGGAGTGCCCAGGTTGCCCTCCACTTCGGGCCTTGACCTTCGACGAGCTTGGTCTCATTAAAGTTACTGAAGCTCGGAGTAAGCAAGGAGGAGTTCCCAAGATGGTAGAGAGATGGGGTGACCCGGATGCCTCGAAATGCGTGCTCGCCGCCTCCATGGATGACCGGAAGTTCGACCCGTTACTAGCTGTTGCGAGAAAGAATGGCACGATTGAGGTTCTTAATCCTCTTAATGGTGATCTCCATTTTTCGGTTTCCAATGTCAGTGAAAATGGTGTTCAGCCTGTAGAGGATGCTGTTTCTGGGTTGCATTTATTTGCAAAACAAAATTTGGAACTAACTTCTAGGTCTTGCACTTTGCTCACATGTACAACGAAAGGAAATGCAAGCATCAGATCTTATGAAGTGACTAAATCAGCTGCAGATGTCACCTCTACTGGATCTTCAAGAACATGGAATGTATGTGCTGGTGGTGATATCTTATGTTCTAAAGTAGATGGTAGTGAAAGCTATTCTTTGTTCGGAGGGAAGCGCGTTGAAATGAATGTATGGGATCTTGAAAACTGTGCCAAGATTTGGACAGCAAAATCTCCTCCTAAAAACAGCCTTGGTATATTTACCCCAACTTGGTTCACATCTGCCACGTATTTGAGTAAAGATGATCATCGCAAATTTGTGGCTGGCACCAACAGCCATGAGGTTCGTCTCTATGACATTTCTGCTCAGCGGAGACCTGTCATAACAGTTAATTTCCGGGAGACCCCTATCAAAGCTGTAGCAGAGGATTTGGATGGCTATACAATCTATATAGGGAATGGATCTGGTGATCTTGCTTCTGTAGATATGCGTACAGGGAAATTGCTAGGATGCTTTTTGGGAAAATGCTCTGGTAGTATAAGATCCATAGCCAGGCACCCAGAATTTCCAGTCATAGCATCATGTGGATTGGATAGTTATCTACGCGTTTGGAATGTAAAGACACGGGAACTACTCTCTGCGGTATGTATTTGGCTTTTATTGTTTTTATGTGATAAATTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

353

Amino Acids

38.61

Weight (kDa)

8.17

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	186 - 337	2.5e-07	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	226 - 335	1.1e-06	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	228 - 339	1.1e-07	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29320 AT1G29320
fragaria_vesca	FvH4_5g07760 FvH4_5g07760 FvH4_5g07760 FvH4_5g07760
malus_domestica	MD06G1147200.v1.1 MD14G1161100.v1.1
prunus_persica	Prupe.1G584300_v2.0.a1 Prupe.1G584300_v2.0.a1 Prupe.1G584300_v2.0.a1 Prupe.1G584300_v2.0.a1
pyrus_communis	pycom14g13400
rosa_chinensis	RchiOBHm_Chr7g0190661
rosa_laevigata	RLG00000004505
rosa_multiflora	Rmu_co8019692.1_g000001 Rmu_sc0006709.1_g000005 Rmu_sc0014053.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264420
rosa_rugosa	Rorug06G0506200
rosa_samantha	Rh7AG112800 Rh7BG115300 Rh7CG117800 Rh7DG116700
rosa_wichuraiana	Rw7G009840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	701, 930
AccB7I	CCANNNNNTGG	1 cut(s)	594
AccII	CGCG	2 cut(s)	552, 981
AciI	CCGC	3 cut(s)	168, 745, 1016
AclWI	GGATC	4 cut(s)	466, 579, 844, 912
AcsI	RAATTY	4 cut(s)	346, 689, 938, 1052
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	2 cut(s)	388, 868
AfiI	CCNNNNNNNGG	5 cut(s)	251, 268, 594, 645, 927
AflIII	ACRYGT	2 cut(s)	383, 979
AgsI	TTSAA	3 cut(s)	465, 557, 578
AjnI	CCWGG	2 cut(s)	28, 926
AleI	CACNNNNGTG	1 cut(s)	22
AluBI	AGCT	6 cut(s)	67, 92, 206, 437, 528, 791
AluI	AGCT	6 cut(s)	67, 92, 206, 437, 528, 791
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	4 cut(s)	77, 728, 742, 770
AlwI	GGATC	4 cut(s)	466, 579, 844, 912
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	4 cut(s)	346, 689, 938, 1052
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspLEI	GCGC	1 cut(s)	552
AspS9I	GGNCC	1 cut(s)	48
AsuC2I	CCSGG	2 cut(s)	143, 773
AsuHPI	GGTGA	5 cut(s)	149, 266, 439, 503, 854
BaeGI	GKGCMC	1 cut(s)	29
BanI	GGYRCC	2 cut(s)	701, 930
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	4 cut(s)	115, 126, 509, 803
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	2 cut(s)	30, 928
BclI	TGATCA	1 cut(s)	679
BcnI	CCSGG	2 cut(s)	143, 773
BcoDI	GTCTC	4 cut(s)	77, 728, 742, 770
BfaI	CTAG	3 cut(s)	203, 363, 881
BfmI	CTRYAG	4 cut(s)	303, 438, 792, 855
BglII	AGATCT	1 cut(s)	413
BisI	GCNGC	2 cut(s)	168, 438
BlpI	GCTNAGC	1 cut(s)	741
BlsI	GCNGC	2 cut(s)	169, 439
Bme1390I	CCNGG	4 cut(s)	30, 143, 773, 928
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	2 cut(s)	703, 932
BmrFI	CCNGG	4 cut(s)	30, 143, 773, 928
BmsI	GCATC	5 cut(s)	136, 301, 417, 875, 962
BpmI	CTGGAG	1 cut(s)	41
Bpu1102I	GCTNAGC	1 cut(s)	741
BpuMI	CCSGG	2 cut(s)	143, 773
BsaAI	YACGTR	1 cut(s)	663
BsaBI	GATNNNNATC	2 cut(s)	681, 972
BsaI	GGTCTC	3 cut(s)	77, 742, 770
BsaJI	CCNNGG	3 cut(s)	28, 174, 625
BsaWI	WCCGGW	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	5 cut(s)	251, 268, 594, 645, 927
Bse1I	ACTGG	3 cut(s)	24, 460, 944
Bse8I	GATNNNNATC	2 cut(s)	681, 972
BseBI	CCWGG	2 cut(s)	30, 928
BseDI	CCNNGG	3 cut(s)	28, 174, 625
BseGI	GGATG	5 cut(s)	151, 184, 316, 814, 890
BseJI	GATNNNNATC	2 cut(s)	681, 972
BseLI	CCNNNNNNNGG	5 cut(s)	251, 268, 594, 645, 927
BseMII	CTCAG	1 cut(s)	755
BseNI	ACTGG	3 cut(s)	24, 460, 944
BseRI	GAGGAG	2 cut(s)	123, 600
BseSI	GKGCMC	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	424
Bsh1236I	CGCG	2 cut(s)	552, 981
BshFI	GGCC	1 cut(s)	50
BshNI	GGYRCC	2 cut(s)	701, 930
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	3 cut(s)	143, 184, 772
BslI	CCNNNNNNNGG	5 cut(s)	251, 268, 594, 645, 927
BsmAI	GTCTC	4 cut(s)	77, 728, 742, 770
BsmBI	CGTCTC	1 cut(s)	728
BsnI	GGCC	1 cut(s)	50
Bso31I	GGTCTC	3 cut(s)	77, 742, 770
Bsp1286I	GDGCHC	2 cut(s)	29, 165
Bsp1407I	TGTACA	1 cut(s)	386
Bsp143I	GATC	8 cut(s)	256, 413, 458, 571, 679, 836, 844, 917
Bsp1720I	GCTNAGC	1 cut(s)	741
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	3 cut(s)	168, 745, 1016
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	754
BspFNI	CGCG	2 cut(s)	552, 981
BspLI	GGNNCC	2 cut(s)	703, 932
BspMAI	CTGCAG	1 cut(s)	442
BspPI	GGATC	4 cut(s)	466, 579, 844, 912
BspT107I	GGYRCC	2 cut(s)	701, 930
BspTNI	GGTCTC	3 cut(s)	77, 742, 770
BsrGI	TGTACA	1 cut(s)	386
BsrI	ACTGG	3 cut(s)	24, 460, 944
BssECI	CCNNGG	3 cut(s)	28, 174, 625
BssMI	GATC	8 cut(s)	256, 413, 458, 571, 679, 836, 844, 917
BssT1I	CCWWGG	2 cut(s)	174, 625
Bst2UI	CCWGG	2 cut(s)	30, 928
Bst4CI	ACNGT	2 cut(s)	584, 763
BstAUI	TGTACA	1 cut(s)	386
BstBAI	YACGTR	1 cut(s)	663
BstC8I	GCNNGC	4 cut(s)	161, 165, 406, 700
BstDEI	CTNAG	1 cut(s)	741
BstDSI	CCRYGG	1 cut(s)	174
BstEII	GGTNACC	1 cut(s)	137
BstF5I	GGATG	5 cut(s)	151, 184, 316, 814, 890
BstFNI	CGCG	2 cut(s)	552, 981
BstHHI	GCGC	1 cut(s)	552
BstKTI	GATC	8 cut(s)	259, 416, 461, 574, 682, 839, 847, 920
BstMAI	GTCTC	4 cut(s)	77, 728, 742, 770
BstMBI	GATC	8 cut(s)	256, 413, 458, 571, 679, 836, 844, 917
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 708
BstNI	CCWGG	2 cut(s)	30, 928
BstNSI	RCATGY	1 cut(s)	387
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	4 cut(s)	28, 141, 771, 926
BstSFI	CTRYAG	4 cut(s)	303, 438, 792, 855
BstSLI	GKGCMC	1 cut(s)	29
BstUI	CGCG	2 cut(s)	552, 981
BstV1I	GCAGC	1 cut(s)	424
BstX2I	RGATCY	5 cut(s)	413, 458, 571, 836, 917
BstXI	CCANNNNNNTGG	1 cut(s)	19
BstYI	RGATCY	5 cut(s)	413, 458, 571, 836, 917
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	668
BtsCI	GGATG	5 cut(s)	151, 184, 316, 814, 890
BtsIMutI	CAGTG	2 cut(s)	17, 289
Cac8I	GCNNGC	4 cut(s)	161, 165, 406, 700
CfoI	GCGC	1 cut(s)	552
Cfr13I	GGNCC	1 cut(s)	48
Csp6I	GTAC	2 cut(s)	387, 867
CviAII	CATG	5 cut(s)	175, 384, 471, 713, 957
CviQI	GTAC	2 cut(s)	387, 867
DdeI	CTNAG	1 cut(s)	741
DpnI	GATC	8 cut(s)	258, 415, 460, 573, 681, 838, 846, 919
DpnII	GATC	8 cut(s)	256, 413, 458, 571, 679, 836, 844, 917
Eco130I	CCWWGG	2 cut(s)	174, 625
Eco31I	GGTCTC	3 cut(s)	77, 742, 770
Eco32I	GATATC	1 cut(s)	496
Eco57I	CTGAAG	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	28, 926
EcoRV	GATATC	1 cut(s)	496
EcoT14I	CCWWGG	2 cut(s)	174, 625
ErhI	CCWWGG	2 cut(s)	174, 625
Esp3I	CGTCTC	1 cut(s)	728
FaeI	CATG	5 cut(s)	178, 387, 474, 716, 960
FalI	AAGNNNNNCTT	2 cut(s)	517, 549
FatI	CATG	5 cut(s)	174, 383, 470, 712, 956
FbaI	TGATCA	1 cut(s)	679
Fnu4HI	GCNGC	2 cut(s)	168, 438
FokI	GGATG	5 cut(s)	158, 191, 323, 821, 897
Fsp4HI	GCNGC	2 cut(s)	168, 438
FspBI	CTAG	3 cut(s)	203, 363, 881
GlaI	GCGC	1 cut(s)	551
GluI	GCNGC	2 cut(s)	168, 438
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	3 cut(s)	143, 184, 772
HhaI	GCGC	1 cut(s)	552
Hin1II	CATG	5 cut(s)	178, 387, 474, 716, 960
Hin6I	GCGC	1 cut(s)	550
HinP1I	GCGC	1 cut(s)	550
HpaII	CCGG	3 cut(s)	143, 184, 772
HphI	GGTGA	5 cut(s)	149, 266, 439, 503, 854
Hpy166II	GTNNAC	1 cut(s)	651
Hpy188I	TCNGA	3 cut(s)	96, 413, 542
Hpy188III	TCNNGA	2 cut(s)	465, 575
Hpy8I	GTNNAC	1 cut(s)	651
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	2 cut(s)	584, 763
HpyCH4IV	ACGT	1 cut(s)	662
HpyCH4V	TGCA	5 cut(s)	328, 338, 372, 404, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 708
HpyF3I	CTNAG	1 cut(s)	741
HpySE526I	ACGT	1 cut(s)	662
Hsp92II	CATG	5 cut(s)	178, 387, 474, 716, 960
HspAI	GCGC	1 cut(s)	550
Ksp22I	TGATCA	1 cut(s)	679
Kzo9I	GATC	8 cut(s)	256, 413, 458, 571, 679, 836, 844, 917
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	5 cut(s)	136, 301, 417, 875, 962
MaeI	CTAG	3 cut(s)	203, 363, 881
MaeII	ACGT	1 cut(s)	662
MaeIII	GTNAC	5 cut(s)	82, 137, 198, 424, 445
MalI	GATC	8 cut(s)	258, 415, 460, 573, 681, 838, 846, 919
MboI	GATC	8 cut(s)	256, 413, 458, 571, 679, 836, 844, 917
MboII	GAAGA	1 cut(s)	453
MflI	RGATCY	5 cut(s)	413, 458, 571, 836, 917
MhlI	GDGCHC	2 cut(s)	29, 165
MluCI	AATT	6 cut(s)	346, 689, 766, 875, 938, 1052
MluI	ACGCGT	1 cut(s)	979
MseI	TTAA	4 cut(s)	78, 240, 249, 765
MslI	CAYNNNNRTG	1 cut(s)	22
MspA1I	CMGCKG	2 cut(s)	437, 745
MspI	CCGG	3 cut(s)	143, 184, 772
MspR9I	CCNGG	4 cut(s)	30, 143, 773, 928
MvaI	CCWGG	2 cut(s)	30, 928
MvnI	CGCG	2 cut(s)	552, 981
MwoI	GCNNNNNNNGC	2 cut(s)	33, 708
NciI	CCSGG	2 cut(s)	143, 773
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	8 cut(s)	256, 413, 458, 571, 679, 836, 844, 917
NlaIII	CATG	5 cut(s)	178, 387, 474, 716, 960
NlaIV	GGNNCC	2 cut(s)	703, 932
NmuCI	GTSAC	3 cut(s)	137, 424, 445
NspI	RCATGY	1 cut(s)	387
OliI	CACNNNNGTG	1 cut(s)	22
PciI	ACATGT	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	594
PfoI	TCCNGGA	1 cut(s)	771
PkrI	GCNGC	2 cut(s)	169, 439
Ppu21I	YACGTR	1 cut(s)	663
PscI	ACATGT	1 cut(s)	383
Psp6I	CCWGG	2 cut(s)	28, 926
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	2 cut(s)	28, 926
PspN4I	GGNNCC	2 cut(s)	703, 932
PspPI	GGNCC	1 cut(s)	48
PstI	CTGCAG	1 cut(s)	442
PsuI	RGATCY	5 cut(s)	413, 458, 571, 836, 917
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	2 cut(s)	388, 868
RsaNI	GTAC	2 cut(s)	387, 867
RseI	CAYNNNNRTG	1 cut(s)	22
SaqAI	TTAA	4 cut(s)	78, 240, 249, 765
SatI	GCNGC	2 cut(s)	168, 438
Sau3AI	GATC	8 cut(s)	256, 413, 458, 571, 679, 836, 844, 917
Sau96I	GGNCC	1 cut(s)	48
ScrFI	CCNGG	4 cut(s)	30, 143, 773, 928
SduI	GDGCHC	2 cut(s)	29, 165
SfaNI	GCATC	5 cut(s)	136, 301, 417, 875, 962
SfcI	CTRYAG	4 cut(s)	303, 438, 792, 855
SmiMI	CAYNNNNRTG	1 cut(s)	22
Sse9I	AATT	6 cut(s)	346, 689, 766, 875, 938, 1052
SsiI	CCGC	3 cut(s)	168, 745, 1016
SspMI	CTAG	3 cut(s)	203, 363, 881
StyD4I	CCNGG	4 cut(s)	28, 141, 771, 926
StyI	CCWWGG	2 cut(s)	174, 625
TaaI	ACNGT	2 cut(s)	584, 763
TaiI	ACGT	1 cut(s)	665
TaqI	TCGA	3 cut(s)	60, 152, 192
TasI	AATT	6 cut(s)	346, 689, 766, 875, 938, 1052
TatI	WGTACW	1 cut(s)	386
TauI	GCSGC	1 cut(s)	170
Tru1I	TTAA	4 cut(s)	78, 240, 249, 765
Tru9I	TTAA	4 cut(s)	78, 240, 249, 765
TscAI	CASTG	2 cut(s)	24, 289
TseFI	GTSAC	3 cut(s)	137, 424, 445
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	3 cut(s)	137, 424, 445
TspDTI	ATGAA	2 cut(s)	435, 575
TspRI	CASTG	2 cut(s)	24, 289
Van91I	CCANNNNNTGG	1 cut(s)	594
XapI	RAATTY	4 cut(s)	346, 689, 938, 1052
XceI	RCATGY	1 cut(s)	387
XspI	CTAG	3 cut(s)	203, 363, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.