Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007269

Physical Location & Seq

Genomic Coordinates Reverse (-)

16346042 .. 16347853

Gene Structure 1812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g13400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCCTCGTACGACAACTCTCGAGTGCCCAGGTTGCCCTCCACTTCGAGCTCTAACCTTCGACGAGCTTGGTCTCATCAAAGTTATTGAAGCTCGGGGTCAGCAAGGAAGAGCAGAGCCTAAGGTGGTTGAGAGATGGGGCGAACCCGATTCGTCTAAAAGCGTGCTCGCCGCCTCTATCGATGACCGAAAATCCGACCCGTTACTAGCTGTTGCCAGAAGAAATGGGACGATTGAGGTTCTAAATCCTCTTAATGGTGGTCTTCGCTTTGCAGTCACCAATTCTAGTGATAACGGTGGGGACGACCCTGTTGCTGGATTACATTTGTTTGCCAAAAAGAATTCGGAATTGGCTTCTAGGTCTTGCACTTTGCTTACATGTACAACAAATGGAAATGCAAGCATAAGATCCTTTGAATTGACTAAACCAGCAGCAGATGTTGCTTCTTCTGGGTCTTCAACAACATGGAGTGTGGGTGCCGGTGGCAGTATCTCATGTTCTAAAGTGGATAGAAGTGAAAATTATTTCTTATTTGGAGGGAAGCGTGTTGAGATGAGTGTCTGGGATCTTGACAGCTGTGCCAAGATATGGACAGCCAAACCTCCTCCTAAAAACCGCCTTGGCATCTTTACCCCAACGTGGTTCACATCTGCCACATTTTTGTGTAAAGATCGATCATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

24.33

Weight (kDa)

8.7

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29320 AT1G29320
fragaria_vesca	FvH4_5g07760 FvH4_5g07760 FvH4_5g07760 FvH4_5g07760
malus_domestica	MD06G1147200.v1.1 MD14G1161100.v1.1
prunus_persica	Prupe.1G584300_v2.0.a1 Prupe.1G584300_v2.0.a1 Prupe.1G584300_v2.0.a1 Prupe.1G584300_v2.0.a1
pyrus_communis	pycom14g13400
rosa_chinensis	RchiOBHm_Chr7g0190661
rosa_laevigata	RLG00000004505
rosa_multiflora	Rmu_co8019692.1_g000001 Rmu_sc0006709.1_g000005 Rmu_sc0014053.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264420
rosa_rugosa	Rorug06G0506200
rosa_samantha	Rh7AG112800 Rh7BG115300 Rh7CG117800 Rh7DG116700
rosa_wichuraiana	Rw7G009840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	476
AccB7I	CCANNNNNTGG	1 cut(s)	588
AciI	CCGC	2 cut(s)	171, 616
AclWI	GGATC	2 cut(s)	402, 573
AcsI	RAATTY	1 cut(s)	340
AfaI	GTAC	2 cut(s)	10, 382
AfiI	CCNNNNNNNGG	4 cut(s)	254, 314, 588, 639
AflIII	ACRYGT	1 cut(s)	377
AgsI	TTSAA	3 cut(s)	89, 416, 459
AjnI	CCWGG	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AluBI	AGCT	5 cut(s)	50, 67, 92, 209, 576
AluI	AGCT	5 cut(s)	50, 67, 92, 209, 576
Alw21I	GWGCWC	2 cut(s)	52, 168
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	2 cut(s)	402, 573
Ama87I	CYCGRG	2 cut(s)	20, 93
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	1 cut(s)	340
AsuHPI	GGTGA	1 cut(s)	268
AvaI	CYCGRG	2 cut(s)	20, 93
AxyI	CCTNAGG	1 cut(s)	120
BaeGI	GKGCMC	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	476
BanII	GRGCYC	1 cut(s)	52
BbsI	GAAGAC	2 cut(s)	254, 447
Bbv12I	GWGCWC	2 cut(s)	52, 168
BbvI	GCAGC	1 cut(s)	443
BccI	CCATC	1 cut(s)	129
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	3 cut(s)	206, 285, 357
BisI	GCNGC	2 cut(s)	171, 432
BlsI	GCNGC	2 cut(s)	172, 433
Bme1390I	CCNGG	1 cut(s)	30
BmeT110I	CYCGRG	2 cut(s)	20, 93
BmiI	GGNNCC	1 cut(s)	478
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	633
BpiI	GAAGAC	2 cut(s)	254, 447
Bsa29I	ATCGAT	2 cut(s)	180, 673
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	28, 619
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	4 cut(s)	254, 314, 588, 639
Bse118I	RCCGGY	1 cut(s)	479
Bse21I	CCTNAGG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	30
BseCI	ATCGAT	2 cut(s)	180, 673
BseDI	CCNNGG	2 cut(s)	28, 619
BseLI	CCNNNNNNNGG	4 cut(s)	254, 314, 588, 639
BseRI	GAGGAG	1 cut(s)	594
BseSI	GKGCMC	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	443
BshNI	GGYRCC	1 cut(s)	476
BshVI	ATCGAT	2 cut(s)	180, 673
BsiHKAI	GWGCWC	2 cut(s)	52, 168
BsiHKCI	CYCGRG	2 cut(s)	20, 93
BsiSI	CCGG	1 cut(s)	480
BsiWI	CGTACG	1 cut(s)	8
BslFI	GGGAC	2 cut(s)	241, 314
BslI	CCNNNNNNNGG	4 cut(s)	254, 314, 588, 639
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	2 cut(s)	241, 314
Bso31I	GGTCTC	1 cut(s)	77
BsoBI	CYCGRG	2 cut(s)	20, 93
Bsp1286I	GDGCHC	3 cut(s)	29, 52, 168
Bsp1407I	TGTACA	1 cut(s)	380
Bsp143I	GATC	4 cut(s)	407, 565, 670, 674
BspACI	CCGC	2 cut(s)	171, 616
BspDI	ATCGAT	2 cut(s)	180, 673
BspLI	GGNNCC	1 cut(s)	478
BspPI	GGATC	2 cut(s)	402, 573
BspQI	GCTCTTC	1 cut(s)	103
BspT107I	GGYRCC	1 cut(s)	476
BspTNI	GGTCTC	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	479
BsrGI	TGTACA	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	479
BssECI	CCNNGG	2 cut(s)	28, 619
BssMI	GATC	4 cut(s)	407, 565, 670, 674
BssT1I	CCWWGG	1 cut(s)	619
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	103
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstAUI	TGTACA	1 cut(s)	380
BstC8I	GCNNGC	3 cut(s)	164, 168, 400
BstDEI	CTNAG	1 cut(s)	120
BstKTI	GATC	4 cut(s)	410, 568, 673, 677
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	4 cut(s)	407, 565, 670, 674
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 440
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	443
BstV2I	GAAGAC	2 cut(s)	254, 447
BstX2I	RGATCY	2 cut(s)	407, 565
BstYI	RGATCY	2 cut(s)	407, 565
Bsu15I	ATCGAT	2 cut(s)	180, 673
Bsu36I	CCTNAGG	1 cut(s)	120
BsuTUI	ATCGAT	2 cut(s)	180, 673
Cac8I	GCNNGC	3 cut(s)	164, 168, 400
Cfr10I	RCCGGY	1 cut(s)	479
ClaI	ATCGAT	2 cut(s)	180, 673
Csp6I	GTAC	2 cut(s)	9, 381
CviAII	CATG	3 cut(s)	378, 465, 495
CviJI	RGCY	8 cut(s)	50, 67, 92, 118, 209, 353, 576, 596
CviKI_1	RGCY	8 cut(s)	50, 67, 92, 118, 209, 353, 576, 596
CviQI	GTAC	2 cut(s)	9, 381
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	4 cut(s)	409, 567, 672, 676
DpnII	GATC	4 cut(s)	407, 565, 670, 674
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Ecl136II	GAGCTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	619
Eco24I	GRGCYC	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	50
Eco81I	CCTNAGG	1 cut(s)	120
Eco88I	CYCGRG	2 cut(s)	20, 93
EcoICRI	GAGCTC	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	619
EcoT38I	GRGCYC	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	619
FaeI	CATG	3 cut(s)	381, 468, 498
FaiI	YATR	5 cut(s)	379, 404, 466, 496, 589
FaqI	GGGAC	2 cut(s)	241, 314
FatI	CATG	3 cut(s)	377, 464, 494
Fnu4HI	GCNGC	2 cut(s)	171, 432
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	2 cut(s)	171, 432
FspBI	CTAG	3 cut(s)	206, 285, 357
GluI	GCNGC	2 cut(s)	171, 432
HapII	CCGG	1 cut(s)	480
Hin1II	CATG	3 cut(s)	381, 468, 498
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	480
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	645
Hpy188I	TCNGA	2 cut(s)	196, 346
Hpy188III	TCNNGA	2 cut(s)	20, 569
Hpy8I	GTNNAC	1 cut(s)	645
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	1 cut(s)	638
HpyCH4V	TGCA	3 cut(s)	272, 366, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 440
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	1 cut(s)	638
Hsp92II	CATG	3 cut(s)	381, 468, 498
Kzo9I	GATC	4 cut(s)	407, 565, 670, 674
LguI	GCTCTTC	1 cut(s)	103
LpnPI	CCDG	9 cut(s)	15, 42, 229, 300, 321, 435, 441, 493, 547
Lsp1109I	GCAGC	1 cut(s)	443
LweI	GCATC	1 cut(s)	633
MaeI	CTAG	3 cut(s)	206, 285, 357
MaeII	ACGT	1 cut(s)	638
MaeIII	GTNAC	2 cut(s)	201, 274
MalI	GATC	4 cut(s)	409, 567, 672, 676
MboI	GATC	4 cut(s)	407, 565, 670, 674
MboII	GAAGA	5 cut(s)	120, 231, 254, 438, 447
MflI	RGATCY	2 cut(s)	407, 565
MhlI	GDGCHC	3 cut(s)	29, 52, 168
MluCI	AATT	5 cut(s)	280, 340, 347, 416, 520
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	8 cut(s)	15, 48, 184, 229, 258, 530, 612, 615
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	661
MspA1I	CMGCKG	1 cut(s)	576
MspI	CCGG	1 cut(s)	480
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	33, 440
NdeII	GATC	4 cut(s)	407, 565, 670, 674
NlaIII	CATG	3 cut(s)	381, 468, 498
NlaIV	GGNNCC	1 cut(s)	478
NmuCI	GTSAC	1 cut(s)	274
NspI	RCATGY	1 cut(s)	381
PaeR7I	CTCGAG	1 cut(s)	20
PciI	ACATGT	1 cut(s)	377
PciSI	GCTCTTC	1 cut(s)	103
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	149
Pfl23II	CGTACG	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	588
PkrI	GCNGC	2 cut(s)	172, 433
PscI	ACATGT	1 cut(s)	377
Psp124BI	GAGCTC	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspLI	CGTACG	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	478
PsrI	GAACNNNNNNTAC	2 cut(s)	481, 513
PsuI	RGATCY	2 cut(s)	407, 565
PvuII	CAGCTG	1 cut(s)	576
RsaI	GTAC	2 cut(s)	10, 382
RsaNI	GTAC	2 cut(s)	9, 381
RseI	CAYNNNNRTG	1 cut(s)	661
SacI	GAGCTC	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	2 cut(s)	171, 432
Sau3AI	GATC	4 cut(s)	407, 565, 670, 674
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	3 cut(s)	29, 52, 168
SfaNI	GCATC	1 cut(s)	633
Sfr274I	CTCGAG	1 cut(s)	20
SlaI	CTCGAG	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	661
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	5 cut(s)	280, 340, 347, 416, 520
SsiI	CCGC	2 cut(s)	171, 616
SspMI	CTAG	3 cut(s)	206, 285, 357
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	1 cut(s)	619
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	1 cut(s)	641
TaqI	TCGA	5 cut(s)	21, 46, 60, 180, 673
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	5 cut(s)	280, 340, 347, 416, 520
TatI	WGTACW	1 cut(s)	380
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	1 cut(s)	431
Tsp45I	GTSAC	1 cut(s)	274
Van91I	CCANNNNNTGG	1 cut(s)	588
XapI	RAATTY	1 cut(s)	340
XceI	RCATGY	1 cut(s)	381
XhoI	CTCGAG	1 cut(s)	20
XspI	CTAG	3 cut(s)	206, 285, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.