RLG00000004505

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
59920119 .. 59923887
3769 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004505

Sequence Viewer

Length: 1329 bp
ATGCCTCGCACCACCACACTGGAGTGCCCAGGTTGCCCTCCACTTCGGGCCTTGACCTTCGACGAGCTTGGTCTCATTAAAGTTACTGAAGCTCGGAGTAAGCAAGGAGGAGTTCCCAAGATGGTAGAGAGATGGGGTGACCCGGATGCCTCGAAATGCGTGCTCGCCGCCTCCATGGATGACCGGAAGTTCGACCCGTTACTAGCTGTTGCGAGAAAGAATGGCACGATTGAGGTTCTTAATCCTCTTAATGGTGATCTCCATTTTTCGGTTTCCAATGTCAGTGAAAATGGTGTTCAGCCTGTAGAGGATGCTGTTTCTGGTTTGCATTTATTTGCGAAACAAAATTTGGAACTAGCTTCTAGGTCTTGCACTTTGCTCACATGTACAACAAAAGGAAATGCAAGCATCAGATCTTATGAAGTGACTAAATCAGCTGCAGATGTCACCTCTACTGGATCTTCAAGAACATGGAATGTATGTGCTGGTGGTGATATCTTATGTTCTAAAGTAGACAGTAGTGAAAGCTATTCTTTGTTCGGAGGGAAGCGCGTTGAAATGAATGTATGGGATCTTGAAAACTGTGCCAAGATTTGGACAGCAAAATCTCCTCCTAAAAACAGCCTTGGTATATTTACCCCAACTTGGTTCACATCTGCCACGTATTTGAGTAAAGATGATCATCGAAAATTTGTGGCCGGCACCAACAACCATGAGGTTCGTCTCTATGACATTTCTGCTCAGCGGAGACCTGTCATAACAGTTAATTTCCGGGAGACCCCTATCAAAGCTGTAGCAGAGGATTTGGATGGCTATACAATCTATTTAGGGAATGGATCTGGTGATCTTGCTTCTGTAGATATGCGTACAGGGAAATTGCTAGGATGCTTTTTGGGAAAATGCTCTGGTAGTATAAGATCCATAGCCAGGCACCCAGAATTTCCAGTCATAGCATCATGTGGATTGGATAGTTATCTACGCGTTTGGAATGTAAAGACACGGGAACTACTCTCTGCGGTTTTCCTGAAGCAGCATCTAACAAACGTTCTTTTTTATTCAAATTTTGCTGATGAAGAAACCAAAGTTACCCTTCCTGCAGCAGATCAATTGCATGAGGAAGAGCATATTGCACCTGAGACTCCTTGTGAAGATGATGGTGAAACATTACCCGTGAAAAAGAAAAAATCTAAAGAAAAGAAAAGAAGCAAGAAGGAAGCAAAAGCAGAGAGTGGAAACAAGGAAGTTTCTGAAGAAAATGGAGGCAAGAAGTCAAAATCCAAGAAAAGCAGCAAAAGATTAAAACGGGAAAATCTTGATGACGAATTATGA

Protein Analysis

443

Amino Acids

48.59

Weight (kDa)

8.32

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 187 - 341 5.8e-08 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 217 - 345 2.8e-07 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 228 - 340 1.2e-07 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 701, 930
AccB7I CCANNNNNTGG 1 cut(s) 594
AccI GTMKAC 1 cut(s) 513
AccII CGCG 2 cut(s) 552, 981
AciI CCGC 3 cut(s) 168, 745, 1016
AclI AACGTT 1 cut(s) 1044
AclWI GGATC 4 cut(s) 466, 579, 844, 912
AcoI YGGCCR 1 cut(s) 696
AcsI RAATTY 4 cut(s) 346, 689, 938, 1060
AcuI CTGAAG 3 cut(s) 108, 1046, 1269
AfaI GTAC 2 cut(s) 388, 868
AfiI CCNNNNNNNGG 5 cut(s) 251, 268, 594, 645, 927
AflIII ACRYGT 2 cut(s) 383, 979
AgsI TTSAA 4 cut(s) 465, 557, 578, 1059
AjnI CCWGG 2 cut(s) 28, 926
AjuI GAANNNNNNNTTGG 2 cut(s) 332, 364
AleI CACNNNNGTG 1 cut(s) 22
AluBI AGCT 7 cut(s) 67, 92, 206, 359, 437, 528, 791
AluI AGCT 7 cut(s) 67, 92, 206, 359, 437, 528, 791
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 5 cut(s) 77, 728, 742, 770, 1130
AlwI GGATC 4 cut(s) 466, 579, 844, 912
AoxI GGCC 2 cut(s) 48, 696
ApeKI GCWGC 4 cut(s) 437, 1030, 1097, 1287
ApoI RAATTY 4 cut(s) 346, 689, 938, 1060
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AspLEI GCGC 1 cut(s) 552
AspS9I GGNCC 1 cut(s) 48
AsuC2I CCSGG 2 cut(s) 143, 773
AsuHPI GGTGA 6 cut(s) 149, 266, 439, 503, 854, 1169
BaeGI GKGCMC 1 cut(s) 29
BanI GGYRCC 2 cut(s) 701, 930
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 4 cut(s) 424, 1042, 1109, 1299
BccI CCATC 4 cut(s) 115, 126, 803, 1148
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BciT130I CCWGG 2 cut(s) 30, 928
BclI TGATCA 1 cut(s) 679
BcnI CCSGG 2 cut(s) 143, 773
BcoDI GTCTC 5 cut(s) 77, 728, 742, 770, 1130
BfaI CTAG 4 cut(s) 203, 356, 363, 881
BfmI CTRYAG 5 cut(s) 303, 438, 792, 855, 1095
BglII AGATCT 1 cut(s) 413
BisI GCNGC 5 cut(s) 168, 438, 1031, 1098, 1288
BlpI GCTNAGC 1 cut(s) 741
BlsI GCNGC 5 cut(s) 169, 439, 1032, 1099, 1289
Bme1390I CCNGG 4 cut(s) 30, 143, 773, 928
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 2 cut(s) 703, 932
BmrFI CCNGG 4 cut(s) 30, 143, 773, 928
BmsI GCATC 6 cut(s) 136, 301, 417, 875, 962, 1042
BpmI CTGGAG 1 cut(s) 41
Bpu1102I GCTNAGC 1 cut(s) 741
BpuMI CCSGG 2 cut(s) 143, 773
BsaAI YACGTR 1 cut(s) 663
BsaBI GATNNNNATC 2 cut(s) 681, 972
BsaI GGTCTC 3 cut(s) 77, 742, 770
BsaJI CCNNGG 3 cut(s) 28, 174, 625
BsaWI WCCGGW 1 cut(s) 183
Bsc4I CCNNNNNNNGG 5 cut(s) 251, 268, 594, 645, 927
Bse118I RCCGGY 1 cut(s) 698
Bse1I ACTGG 3 cut(s) 24, 460, 944
Bse8I GATNNNNATC 2 cut(s) 681, 972
BseBI CCWGG 2 cut(s) 30, 928
BseDI CCNNGG 3 cut(s) 28, 174, 625
BseGI GGATG 5 cut(s) 151, 184, 316, 814, 890
BseJI GATNNNNATC 2 cut(s) 681, 972
BseLI CCNNNNNNNGG 5 cut(s) 251, 268, 594, 645, 927
BseMII CTCAG 2 cut(s) 755, 1125
BseNI ACTGG 3 cut(s) 24, 460, 944
BseRI GAGGAG 2 cut(s) 123, 600
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 4 cut(s) 424, 1042, 1109, 1299
Bsh1236I CGCG 2 cut(s) 552, 981
BshFI GGCC 2 cut(s) 50, 698
BshNI GGYRCC 2 cut(s) 701, 930
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 4 cut(s) 143, 184, 699, 772
BslI CCNNNNNNNGG 5 cut(s) 251, 268, 594, 645, 927
BsmAI GTCTC 5 cut(s) 77, 728, 742, 770, 1130
BsmBI CGTCTC 1 cut(s) 728
BsnI GGCC 2 cut(s) 50, 698
Bso31I GGTCTC 3 cut(s) 77, 742, 770
Bsp1286I GDGCHC 2 cut(s) 29, 165
Bsp1407I TGTACA 1 cut(s) 386
Bsp143I GATC 9 cut(s) 256, 413, 458, 571, 679, 836, 844, 917, 1102
Bsp1720I GCTNAGC 1 cut(s) 741
Bsp19I CCATGG 1 cut(s) 174
BspACI CCGC 3 cut(s) 168, 745, 1016
BspANI GGCC 2 cut(s) 50, 698
BspCNI CTCAG 2 cut(s) 754, 1126
BspFNI CGCG 2 cut(s) 552, 981
BspLI GGNNCC 2 cut(s) 703, 932
BspMAI CTGCAG 2 cut(s) 442, 1099
BspPI GGATC 4 cut(s) 466, 579, 844, 912
BspQI GCTCTTC 1 cut(s) 1113
BspT107I GGYRCC 2 cut(s) 701, 930
BspTNI GGTCTC 3 cut(s) 77, 742, 770
BsrFI RCCGGY 1 cut(s) 698
BsrGI TGTACA 1 cut(s) 386
BsrI ACTGG 3 cut(s) 24, 460, 944
BssAI RCCGGY 1 cut(s) 698
BssECI CCNNGG 3 cut(s) 28, 174, 625
BssMI GATC 9 cut(s) 256, 413, 458, 571, 679, 836, 844, 917, 1102
BssT1I CCWWGG 2 cut(s) 174, 625
Bst2UI CCWGG 2 cut(s) 30, 928
Bst4CI ACNGT 3 cut(s) 518, 584, 763
Bst6I CTCTTC 1 cut(s) 1113
BstAUI TGTACA 1 cut(s) 386
BstBAI YACGTR 1 cut(s) 663
BstC8I GCNNGC 4 cut(s) 161, 165, 406, 700
BstDEI CTNAG 2 cut(s) 741, 1134
BstDSI CCRYGG 1 cut(s) 174
BstEII GGTNACC 1 cut(s) 137
BstF5I GGATG 5 cut(s) 151, 184, 316, 814, 890
BstFNI CGCG 2 cut(s) 552, 981
BstHHI GCGC 1 cut(s) 552
BstKTI GATC 9 cut(s) 259, 416, 461, 574, 682, 839, 847, 920, 1105
BstMAI GTCTC 5 cut(s) 77, 728, 742, 770, 1130
BstMBI GATC 9 cut(s) 256, 413, 458, 571, 679, 836, 844, 917, 1102
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNI CCWGG 2 cut(s) 30, 928
BstNSI RCATGY 1 cut(s) 387
BstPI GGTNACC 1 cut(s) 137
BstSCI CCNGG 4 cut(s) 28, 141, 771, 926
BstSFI CTRYAG 5 cut(s) 303, 438, 792, 855, 1095
BstSLI GKGCMC 1 cut(s) 29
BstUI CGCG 2 cut(s) 552, 981
BstV1I GCAGC 4 cut(s) 424, 1042, 1109, 1299
BstX2I RGATCY 5 cut(s) 413, 458, 571, 836, 917
BstXI CCANNNNNNTGG 1 cut(s) 19
BstYI RGATCY 5 cut(s) 413, 458, 571, 836, 917
BsuRI GGCC 2 cut(s) 50, 698
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 5 cut(s) 151, 184, 316, 814, 890
BtsIMutI CAGTG 2 cut(s) 17, 289
Cac8I GCNNGC 4 cut(s) 161, 165, 406, 700
CfoI GCGC 1 cut(s) 552
Cfr10I RCCGGY 1 cut(s) 698
Cfr13I GGNCC 1 cut(s) 48
Csp6I GTAC 2 cut(s) 387, 867
CviAII CATG 6 cut(s) 175, 384, 471, 713, 957, 1112
CviQI GTAC 2 cut(s) 387, 867
DdeI CTNAG 2 cut(s) 741, 1134
DpnI GATC 9 cut(s) 258, 415, 460, 573, 681, 838, 846, 919, 1104
DpnII GATC 9 cut(s) 256, 413, 458, 571, 679, 836, 844, 917, 1102
EaeI YGGCCR 1 cut(s) 696
Eam1104I CTCTTC 1 cut(s) 1113
EarI CTCTTC 1 cut(s) 1113
Eco130I CCWWGG 2 cut(s) 174, 625
Eco31I GGTCTC 3 cut(s) 77, 742, 770
Eco32I GATATC 1 cut(s) 496
Eco57I CTGAAG 3 cut(s) 108, 1046, 1269
Eco91I GGTNACC 1 cut(s) 137
EcoO65I GGTNACC 1 cut(s) 137
EcoRII CCWGG 2 cut(s) 28, 926
EcoRV GATATC 1 cut(s) 496
EcoT14I CCWWGG 2 cut(s) 174, 625
ErhI CCWWGG 2 cut(s) 174, 625
Esp3I CGTCTC 1 cut(s) 728
FaeI CATG 6 cut(s) 178, 387, 474, 716, 960, 1115
FalI AAGNNNNNCTT 4 cut(s) 517, 549, 1074, 1106
FatI CATG 6 cut(s) 174, 383, 470, 712, 956, 1111
FbaI TGATCA 1 cut(s) 679
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 5 cut(s) 168, 438, 1031, 1098, 1288
FokI GGATG 5 cut(s) 158, 191, 323, 821, 897
Fsp4HI GCNGC 5 cut(s) 168, 438, 1031, 1098, 1288
FspBI CTAG 4 cut(s) 203, 356, 363, 881
GlaI GCGC 1 cut(s) 551
GluI GCNGC 5 cut(s) 168, 438, 1031, 1098, 1288
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 2 cut(s) 50, 698
HapII CCGG 4 cut(s) 143, 184, 699, 772
HhaI GCGC 1 cut(s) 552
Hin1II CATG 6 cut(s) 178, 387, 474, 716, 960, 1115
Hin6I GCGC 1 cut(s) 550
HinP1I GCGC 1 cut(s) 550
HinfI GANTC 1 cut(s) 1138
HpaII CCGG 4 cut(s) 143, 184, 699, 772
HphI GGTGA 6 cut(s) 149, 266, 439, 503, 854, 1169
Hpy166II GTNNAC 2 cut(s) 514, 651
Hpy188I TCNGA 4 cut(s) 96, 413, 542, 1249
Hpy188III TCNNGA 4 cut(s) 465, 575, 1024, 1313
Hpy8I GTNNAC 2 cut(s) 514, 651
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 3 cut(s) 67, 1100, 1204
HpyCH4III ACNGT 3 cut(s) 518, 584, 763
HpyCH4IV ACGT 2 cut(s) 662, 1044
HpyCH4V TGCA 7 cut(s) 328, 372, 404, 440, 1097, 1111, 1130
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 2 cut(s) 741, 1134
HpySE526I ACGT 2 cut(s) 662, 1044
Hsp92II CATG 6 cut(s) 178, 387, 474, 716, 960, 1115
HspAI GCGC 1 cut(s) 550
KroI GCCGGC 1 cut(s) 698
KroNI GCCGGC 1 cut(s) 700
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 9 cut(s) 256, 413, 458, 571, 679, 836, 844, 917, 1102
LguI GCTCTTC 1 cut(s) 1113
Lsp1109I GCAGC 4 cut(s) 424, 1042, 1109, 1299
LweI GCATC 6 cut(s) 136, 301, 417, 875, 962, 1042
MaeI CTAG 4 cut(s) 203, 356, 363, 881
MaeII ACGT 2 cut(s) 662, 1044
MaeIII GTNAC 6 cut(s) 82, 137, 198, 424, 445, 1084
MalI GATC 9 cut(s) 258, 415, 460, 573, 681, 838, 846, 919, 1104
MboI GATC 9 cut(s) 256, 413, 458, 571, 679, 836, 844, 917, 1102
MboII GAAGA 5 cut(s) 453, 1085, 1130, 1160, 1262
MfeI CAATTG 1 cut(s) 1106
MflI RGATCY 5 cut(s) 413, 458, 571, 836, 917
MhlI GDGCHC 2 cut(s) 29, 165
MluCI AATT 8 cut(s) 346, 689, 766, 875, 938, 1060, 1106, 1322
MluI ACGCGT 1 cut(s) 979
MlyI GAGTC 1 cut(s) 1132
MroNI GCCGGC 1 cut(s) 698
MseI TTAA 5 cut(s) 78, 240, 249, 765, 1298
MslI CAYNNNNRTG 1 cut(s) 22
MspA1I CMGCKG 2 cut(s) 437, 745
MspI CCGG 4 cut(s) 143, 184, 699, 772
MspR9I CCNGG 4 cut(s) 30, 143, 773, 928
MunI CAATTG 1 cut(s) 1106
MvaI CCWGG 2 cut(s) 30, 928
MvnI CGCG 2 cut(s) 552, 981
MwoI GCNNNNNNNGC 1 cut(s) 33
NaeI GCCGGC 1 cut(s) 700
NciI CCSGG 2 cut(s) 143, 773
NcoI CCATGG 1 cut(s) 174
NdeII GATC 9 cut(s) 256, 413, 458, 571, 679, 836, 844, 917, 1102
NgoMIV GCCGGC 1 cut(s) 698
NlaIII CATG 6 cut(s) 178, 387, 474, 716, 960, 1115
NlaIV GGNNCC 2 cut(s) 703, 932
NmuCI GTSAC 3 cut(s) 137, 424, 445
NspI RCATGY 1 cut(s) 387
OliI CACNNNNGTG 1 cut(s) 22
PciI ACATGT 1 cut(s) 383
PciSI GCTCTTC 1 cut(s) 1113
PdiI GCCGGC 1 cut(s) 700
PflMI CCANNNNNTGG 1 cut(s) 594
PfoI TCCNGGA 1 cut(s) 771
PkrI GCNGC 5 cut(s) 169, 439, 1032, 1099, 1289
PleI GAGTC 1 cut(s) 1132
PpsI GAGTC 1 cut(s) 1132
Ppu21I YACGTR 1 cut(s) 663
PscI ACATGT 1 cut(s) 383
Psp1406I AACGTT 1 cut(s) 1044
Psp6I CCWGG 2 cut(s) 28, 926
PspEI GGTNACC 1 cut(s) 137
PspGI CCWGG 2 cut(s) 28, 926
PspN4I GGNNCC 2 cut(s) 703, 932
PspPI GGNCC 1 cut(s) 48
PstI CTGCAG 2 cut(s) 442, 1099
PsuI RGATCY 5 cut(s) 413, 458, 571, 836, 917
PvuII CAGCTG 1 cut(s) 437
RsaI GTAC 2 cut(s) 388, 868
RsaNI GTAC 2 cut(s) 387, 867
RseI CAYNNNNRTG 1 cut(s) 22
SapI GCTCTTC 1 cut(s) 1113
SaqAI TTAA 5 cut(s) 78, 240, 249, 765, 1298
SatI GCNGC 5 cut(s) 168, 438, 1031, 1098, 1288
Sau3AI GATC 9 cut(s) 256, 413, 458, 571, 679, 836, 844, 917, 1102
Sau96I GGNCC 1 cut(s) 48
SchI GAGTC 1 cut(s) 1132
ScrFI CCNGG 4 cut(s) 30, 143, 773, 928
SduI GDGCHC 2 cut(s) 29, 165
SfaNI GCATC 6 cut(s) 136, 301, 417, 875, 962, 1042
SfcI CTRYAG 5 cut(s) 303, 438, 792, 855, 1095
SmiMI CAYNNNNRTG 1 cut(s) 22
Sse9I AATT 8 cut(s) 346, 689, 766, 875, 938, 1060, 1106, 1322
SsiI CCGC 3 cut(s) 168, 745, 1016
SspMI CTAG 4 cut(s) 203, 356, 363, 881
StyD4I CCNGG 4 cut(s) 28, 141, 771, 926
StyI CCWWGG 2 cut(s) 174, 625
TaaI ACNGT 3 cut(s) 518, 584, 763
TaiI ACGT 2 cut(s) 665, 1047
TaqI TCGA 4 cut(s) 60, 152, 192, 685
TasI AATT 8 cut(s) 346, 689, 766, 875, 938, 1060, 1106, 1322
TatI WGTACW 1 cut(s) 386
TauI GCSGC 1 cut(s) 170
Tru1I TTAA 5 cut(s) 78, 240, 249, 765, 1298
Tru9I TTAA 5 cut(s) 78, 240, 249, 765, 1298
TscAI CASTG 2 cut(s) 24, 289
TseFI GTSAC 3 cut(s) 137, 424, 445
TseI GCWGC 4 cut(s) 437, 1030, 1097, 1287
Tsp45I GTSAC 3 cut(s) 137, 424, 445
TspDTI ATGAA 3 cut(s) 435, 575, 1086
TspRI CASTG 2 cut(s) 24, 289
Van91I CCANNNNNTGG 1 cut(s) 594
XapI RAATTY 4 cut(s) 346, 689, 938, 1060
XceI RCATGY 1 cut(s) 387
XmiI GTMKAC 1 cut(s) 513
XspI CTAG 4 cut(s) 203, 356, 363, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.