Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007269

Physical Location & Seq

Genomic Coordinates Reverse (-)

9842332 .. 9846438

Gene Structure 4107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG116700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGCCTCGTACCACCACACTGGAGTGCCCAGGTTGCCCTCCACTTCGGGCCTTGACCTTCGACGAGCTTGGTCTCATTAAAGTTACTGAAGCTCGGAGTAAGCAAGGAGGAGTTCCCAAGATGGTAGAGAGATGGGGTGACCCGGATGCCTCGAAATGCGTGCTCGCCGCCTCCATGGATGACCGGAAGTTCGATCCGTTACTAGCTGTTGCGAGAAAGAATGGCACGATTGAGGTTCTTAATCCTCTTAATGGTGATCTCCATTTTTCGGTTTCCAATGTCAGTGAAAATGGTGTTCAGCCTGTAGAGGATGCTGTTTCTGGGTTGCATTTATTTGCAAAACAAAATTTGGAACCAACTTCTAGGTCTTGCACTTTGCTCACATGTACAATGAAAGGAAATGCAAGCATCAGATCTTATGAAGTGACTAAATCAGCTGCAGATGTCACCTCTACTGGATCTTCAAGAACATGGAATGTATGTGCTGGTGGTGATATCTTATGTTCTAAAGTAGATGGTAGTGAAAGCTATTCTTTGTTCGGAGGGAAGCGCGTTGAAATGAATGTATGGGATCTTGAAAACTGTGCCAAGATTTGGACAGCAAAATCTCCTCCTAAAAACAGCCTTGGTATATTTACCCCAACTTGGTTCACATCTGCCACGTATTTGAGTAAAGATGATCATCGCAAATTTGTGGCCGGCACCAACAGCCATGAGGTTCGTCTCTATGACATTTCTGCTCAGCGGAGACCTGTCATAACAGTTAATTTCCGGGAGACCCCTATCAAAGCTGTAGCAGAGGATTTGGATGGCTATACAATCTATATAGGGAATGGATCTGGTGATCTTGCTTCTGTAGATATGCGTACAGGTGCATGGATAGGATGCATTAAAGTTTCTATTATTTTGTACTCGATCATTTCTTACTGTTTATATTGCTTCTTGCTTTATGTTAATGCATTGTTGTCTTATAGGGAAATTGCTAGGATGCTTTTTGGGAAAATGCTCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

337

Amino Acids

37.04

Weight (kDa)

7.94

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29320 AT1G29320
fragaria_vesca	FvH4_5g07760 FvH4_5g07760 FvH4_5g07760 FvH4_5g07760
malus_domestica	MD06G1147200.v1.1 MD14G1161100.v1.1
prunus_persica	Prupe.1G584300_v2.0.a1 Prupe.1G584300_v2.0.a1 Prupe.1G584300_v2.0.a1 Prupe.1G584300_v2.0.a1
pyrus_communis	pycom14g13400
rosa_chinensis	RchiOBHm_Chr7g0190661
rosa_laevigata	RLG00000004505
rosa_multiflora	Rmu_co8019692.1_g000001 Rmu_sc0006709.1_g000005 Rmu_sc0014053.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264420
rosa_rugosa	Rorug06G0506200
rosa_samantha	Rh7AG112800 Rh7BG115300 Rh7CG117800 Rh7DG116700
rosa_wichuraiana	Rw7G009840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	701
AccB7I	CCANNNNNTGG	1 cut(s)	594
AccII	CGCG	1 cut(s)	552
AciI	CCGC	2 cut(s)	168, 745
AclWI	GGATC	4 cut(s)	188, 466, 579, 844
AcoI	YGGCCR	1 cut(s)	696
AcsI	RAATTY	2 cut(s)	346, 689
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	4 cut(s)	10, 388, 868, 911
AfiI	CCNNNNNNNGG	4 cut(s)	251, 268, 594, 645
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	465, 557, 578
AjnI	CCWGG	1 cut(s)	28
AleI	CACNNNNGTG	1 cut(s)	22
AluBI	AGCT	6 cut(s)	67, 92, 206, 437, 528, 791
AluI	AGCT	6 cut(s)	67, 92, 206, 437, 528, 791
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	4 cut(s)	77, 728, 742, 770
AlwI	GGATC	4 cut(s)	188, 466, 579, 844
AoxI	GGCC	2 cut(s)	48, 696
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	2 cut(s)	346, 689
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspLEI	GCGC	1 cut(s)	552
AspS9I	GGNCC	1 cut(s)	48
AsuC2I	CCSGG	2 cut(s)	143, 773
AsuHPI	GGTGA	5 cut(s)	149, 266, 439, 503, 854
BaeGI	GKGCMC	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	701
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	4 cut(s)	115, 126, 509, 803
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	1 cut(s)	30
BclI	TGATCA	1 cut(s)	679
BcnI	CCSGG	2 cut(s)	143, 773
BcoDI	GTCTC	4 cut(s)	77, 728, 742, 770
BfaI	CTAG	3 cut(s)	203, 363, 984
BfmI	CTRYAG	4 cut(s)	303, 438, 792, 855
BglII	AGATCT	1 cut(s)	413
BisI	GCNGC	2 cut(s)	168, 438
BlpI	GCTNAGC	1 cut(s)	741
BlsI	GCNGC	2 cut(s)	169, 439
Bme1390I	CCNGG	3 cut(s)	30, 143, 773
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	2 cut(s)	354, 703
BmrFI	CCNGG	3 cut(s)	30, 143, 773
BmsI	GCATC	5 cut(s)	136, 301, 417, 875, 978
BpmI	CTGGAG	1 cut(s)	41
Bpu1102I	GCTNAGC	1 cut(s)	741
BpuMI	CCSGG	2 cut(s)	143, 773
BsaAI	YACGTR	1 cut(s)	663
BsaBI	GATNNNNATC	1 cut(s)	681
BsaI	GGTCTC	3 cut(s)	77, 742, 770
BsaJI	CCNNGG	3 cut(s)	28, 174, 625
BsaWI	WCCGGW	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	4 cut(s)	251, 268, 594, 645
Bse118I	RCCGGY	1 cut(s)	698
Bse1I	ACTGG	2 cut(s)	24, 460
Bse8I	GATNNNNATC	1 cut(s)	681
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	3 cut(s)	28, 174, 625
BseGI	GGATG	6 cut(s)	151, 184, 316, 814, 890, 993
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	4 cut(s)	251, 268, 594, 645
BseMII	CTCAG	1 cut(s)	755
BseNI	ACTGG	2 cut(s)	24, 460
BseRI	GAGGAG	2 cut(s)	123, 600
BseSI	GKGCMC	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	424
Bsh1236I	CGCG	1 cut(s)	552
BshFI	GGCC	2 cut(s)	50, 698
BshNI	GGYRCC	1 cut(s)	701
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	4 cut(s)	143, 184, 699, 772
BslI	CCNNNNNNNGG	4 cut(s)	251, 268, 594, 645
BsmAI	GTCTC	4 cut(s)	77, 728, 742, 770
BsmBI	CGTCTC	1 cut(s)	728
BsnI	GGCC	2 cut(s)	50, 698
Bso31I	GGTCTC	3 cut(s)	77, 742, 770
Bsp1286I	GDGCHC	2 cut(s)	29, 165
Bsp1407I	TGTACA	1 cut(s)	386
Bsp143I	GATC	9 cut(s)	193, 256, 413, 458, 571, 679, 836, 844, 915
Bsp1720I	GCTNAGC	1 cut(s)	741
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	2 cut(s)	168, 745
BspANI	GGCC	2 cut(s)	50, 698
BspCNI	CTCAG	1 cut(s)	754
BspFNI	CGCG	1 cut(s)	552
BspLI	GGNNCC	2 cut(s)	354, 703
BspMAI	CTGCAG	1 cut(s)	442
BspPI	GGATC	4 cut(s)	188, 466, 579, 844
BspT107I	GGYRCC	1 cut(s)	701
BspTNI	GGTCTC	3 cut(s)	77, 742, 770
BsrFI	RCCGGY	1 cut(s)	698
BsrGI	TGTACA	1 cut(s)	386
BsrI	ACTGG	2 cut(s)	24, 460
BssAI	RCCGGY	1 cut(s)	698
BssECI	CCNNGG	3 cut(s)	28, 174, 625
BssMI	GATC	9 cut(s)	193, 256, 413, 458, 571, 679, 836, 844, 915
BssT1I	CCWWGG	2 cut(s)	174, 625
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	3 cut(s)	584, 763, 929
BstAUI	TGTACA	1 cut(s)	386
BstBAI	YACGTR	1 cut(s)	663
BstC8I	GCNNGC	4 cut(s)	161, 165, 406, 700
BstDEI	CTNAG	1 cut(s)	741
BstDSI	CCRYGG	1 cut(s)	174
BstEII	GGTNACC	1 cut(s)	137
BstF5I	GGATG	6 cut(s)	151, 184, 316, 814, 890, 993
BstFNI	CGCG	1 cut(s)	552
BstHHI	GCGC	1 cut(s)	552
BstKTI	GATC	9 cut(s)	196, 259, 416, 461, 574, 682, 839, 847, 918
BstMAI	GTCTC	4 cut(s)	77, 728, 742, 770
BstMBI	GATC	9 cut(s)	193, 256, 413, 458, 571, 679, 836, 844, 915
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 708
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	387
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	3 cut(s)	28, 141, 771
BstSFI	CTRYAG	4 cut(s)	303, 438, 792, 855
BstSLI	GKGCMC	1 cut(s)	29
BstUI	CGCG	1 cut(s)	552
BstV1I	GCAGC	1 cut(s)	424
BstX2I	RGATCY	4 cut(s)	413, 458, 571, 836
BstXI	CCANNNNNNTGG	1 cut(s)	19
BstYI	RGATCY	4 cut(s)	413, 458, 571, 836
BsuRI	GGCC	2 cut(s)	50, 698
BtgI	CCRYGG	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	668
BtsCI	GGATG	6 cut(s)	151, 184, 316, 814, 890, 993
BtsIMutI	CAGTG	2 cut(s)	17, 289
Cac8I	GCNNGC	4 cut(s)	161, 165, 406, 700
CfoI	GCGC	1 cut(s)	552
Cfr10I	RCCGGY	1 cut(s)	698
Cfr13I	GGNCC	1 cut(s)	48
Csp6I	GTAC	4 cut(s)	9, 387, 867, 910
CviAII	CATG	5 cut(s)	175, 384, 471, 713, 876
CviQI	GTAC	4 cut(s)	9, 387, 867, 910
DdeI	CTNAG	1 cut(s)	741
DpnI	GATC	9 cut(s)	195, 258, 415, 460, 573, 681, 838, 846, 917
DpnII	GATC	9 cut(s)	193, 256, 413, 458, 571, 679, 836, 844, 915
EaeI	YGGCCR	1 cut(s)	696
Eco130I	CCWWGG	2 cut(s)	174, 625
Eco31I	GGTCTC	3 cut(s)	77, 742, 770
Eco32I	GATATC	1 cut(s)	496
Eco57I	CTGAAG	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	496
EcoT14I	CCWWGG	2 cut(s)	174, 625
EcoT22I	ATGCAT	2 cut(s)	890, 961
ErhI	CCWWGG	2 cut(s)	174, 625
Esp3I	CGTCTC	1 cut(s)	728
FaeI	CATG	5 cut(s)	178, 387, 474, 716, 879
FalI	AAGNNNNNCTT	2 cut(s)	517, 549
FatI	CATG	5 cut(s)	174, 383, 470, 712, 875
FbaI	TGATCA	1 cut(s)	679
Fnu4HI	GCNGC	2 cut(s)	168, 438
FokI	GGATG	6 cut(s)	158, 191, 323, 821, 897, 1000
Fsp4HI	GCNGC	2 cut(s)	168, 438
FspBI	CTAG	3 cut(s)	203, 363, 984
GlaI	GCGC	1 cut(s)	551
GluI	GCNGC	2 cut(s)	168, 438
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	50, 698
HapII	CCGG	4 cut(s)	143, 184, 699, 772
HhaI	GCGC	1 cut(s)	552
Hin1II	CATG	5 cut(s)	178, 387, 474, 716, 879
Hin6I	GCGC	1 cut(s)	550
HinP1I	GCGC	1 cut(s)	550
HpaII	CCGG	4 cut(s)	143, 184, 699, 772
HphI	GGTGA	5 cut(s)	149, 266, 439, 503, 854
Hpy166II	GTNNAC	1 cut(s)	651
Hpy188I	TCNGA	3 cut(s)	96, 413, 542
Hpy188III	TCNNGA	2 cut(s)	465, 575
Hpy8I	GTNNAC	1 cut(s)	651
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	3 cut(s)	584, 763, 929
HpyCH4IV	ACGT	1 cut(s)	662
HpyCH4V	TGCA	8 cut(s)	328, 338, 372, 404, 440, 875, 888, 959
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 708
HpyF3I	CTNAG	1 cut(s)	741
HpySE526I	ACGT	1 cut(s)	662
Hsp92II	CATG	5 cut(s)	178, 387, 474, 716, 879
HspAI	GCGC	1 cut(s)	550
KroI	GCCGGC	1 cut(s)	698
KroNI	GCCGGC	1 cut(s)	700
Ksp22I	TGATCA	1 cut(s)	679
Kzo9I	GATC	9 cut(s)	193, 256, 413, 458, 571, 679, 836, 844, 915
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	5 cut(s)	136, 301, 417, 875, 978
MaeI	CTAG	3 cut(s)	203, 363, 984
MaeII	ACGT	1 cut(s)	662
MaeIII	GTNAC	5 cut(s)	82, 137, 198, 424, 445
MalI	GATC	9 cut(s)	195, 258, 415, 460, 573, 681, 838, 846, 917
MboI	GATC	9 cut(s)	193, 256, 413, 458, 571, 679, 836, 844, 915
MboII	GAAGA	1 cut(s)	453
MflI	RGATCY	4 cut(s)	413, 458, 571, 836
MhlI	GDGCHC	2 cut(s)	29, 165
MluCI	AATT	4 cut(s)	346, 689, 766, 978
Mph1103I	ATGCAT	2 cut(s)	890, 961
MroNI	GCCGGC	1 cut(s)	698
MseI	TTAA	6 cut(s)	78, 240, 249, 765, 891, 954
MslI	CAYNNNNRTG	1 cut(s)	22
MspA1I	CMGCKG	2 cut(s)	437, 745
MspI	CCGG	4 cut(s)	143, 184, 699, 772
MspR9I	CCNGG	3 cut(s)	30, 143, 773
MvaI	CCWGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	552
MwoI	GCNNNNNNNGC	2 cut(s)	33, 708
NaeI	GCCGGC	1 cut(s)	700
NciI	CCSGG	2 cut(s)	143, 773
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	9 cut(s)	193, 256, 413, 458, 571, 679, 836, 844, 915
NgoMIV	GCCGGC	1 cut(s)	698
NlaIII	CATG	5 cut(s)	178, 387, 474, 716, 879
NlaIV	GGNNCC	2 cut(s)	354, 703
NmuCI	GTSAC	3 cut(s)	137, 424, 445
NsiI	ATGCAT	2 cut(s)	890, 961
NspI	RCATGY	1 cut(s)	387
OliI	CACNNNNGTG	1 cut(s)	22
PciI	ACATGT	1 cut(s)	383
PdiI	GCCGGC	1 cut(s)	700
PflMI	CCANNNNNTGG	1 cut(s)	594
PfoI	TCCNGGA	1 cut(s)	771
PkrI	GCNGC	2 cut(s)	169, 439
Ppu21I	YACGTR	1 cut(s)	663
PscI	ACATGT	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	28
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	2 cut(s)	354, 703
PspPI	GGNCC	1 cut(s)	48
PstI	CTGCAG	1 cut(s)	442
PsuI	RGATCY	4 cut(s)	413, 458, 571, 836
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	4 cut(s)	10, 388, 868, 911
RsaNI	GTAC	4 cut(s)	9, 387, 867, 910
RseI	CAYNNNNRTG	1 cut(s)	22
SaqAI	TTAA	6 cut(s)	78, 240, 249, 765, 891, 954
SatI	GCNGC	2 cut(s)	168, 438
Sau3AI	GATC	9 cut(s)	193, 256, 413, 458, 571, 679, 836, 844, 915
Sau96I	GGNCC	1 cut(s)	48
ScrFI	CCNGG	3 cut(s)	30, 143, 773
SduI	GDGCHC	2 cut(s)	29, 165
SfaNI	GCATC	5 cut(s)	136, 301, 417, 875, 978
SfcI	CTRYAG	4 cut(s)	303, 438, 792, 855
SmiMI	CAYNNNNRTG	1 cut(s)	22
Sse9I	AATT	4 cut(s)	346, 689, 766, 978
SsiI	CCGC	2 cut(s)	168, 745
SspMI	CTAG	3 cut(s)	203, 363, 984
StyD4I	CCNGG	3 cut(s)	28, 141, 771
StyI	CCWWGG	2 cut(s)	174, 625
TaaI	ACNGT	3 cut(s)	584, 763, 929
TaiI	ACGT	1 cut(s)	665
TaqI	TCGA	4 cut(s)	60, 152, 192, 914
TasI	AATT	4 cut(s)	346, 689, 766, 978
TatI	WGTACW	2 cut(s)	386, 909
TauI	GCSGC	1 cut(s)	170
Tru1I	TTAA	6 cut(s)	78, 240, 249, 765, 891, 954
Tru9I	TTAA	6 cut(s)	78, 240, 249, 765, 891, 954
TscAI	CASTG	2 cut(s)	24, 289
TseFI	GTSAC	3 cut(s)	137, 424, 445
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	3 cut(s)	137, 424, 445
TspDTI	ATGAA	3 cut(s)	407, 435, 575
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	2 cut(s)	24, 289
Van91I	CCANNNNNTGG	1 cut(s)	594
XapI	RAATTY	2 cut(s)	346, 689
XceI	RCATGY	1 cut(s)	387
XspI	CTAG	3 cut(s)	203, 363, 984
Zsp2I	ATGCAT	2 cut(s)	890, 961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.