Prupe.1G586900_v2.0.a1

Bacterial trigger factor protein (TF)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011553
Physical Location & Seq
Reverse (-)
47639266 .. 47642311
3046 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G586900.1

Sequence Viewer

Length: 663 bp
ATGACAACAGTAGTACCCTCTCATTTCCAGTCCCTTGGGCTTCCCAAACAGTTCCCTGTTAGAAGCTACTGCAGTCGTGCTCTTACATGTCAAAACGCTACAAGGATTGTTGAGTTCTGCAACACACAACGCAAGCTGTTTACGAGTCCGCATAAGACGGGTCATGCTCGTTTATCCAGGCTGATATATGCAGCTGGTTCAGGTTTAGAGGCATCTATTGCAGATGTAGAAGGCAATCTCATAACATTGAAAACCGCCAAGATTGTCATAGAGTCCCGAGAAGATAATAAGATACAAGTTAGAGTAGACTTGACTGGGGATGACACAGAAAAAGTTTTTGATAAGGTTTTGACAAACTTGGCACGCACAGCACCACCAGTTCCCGGATTTCGCAGACAAAAAGGAGGAAAAACATCAAAGGTCCCAAAAAGCTTTCTCTTGGATATACTTGGTAAGGAGCGTGTCACAAAGTTTGTCATACAAGAAATAATAAGCTCTACCATGGGTGATTATGTAAAGAAGGAAAACTTGAATGTGAAGGAAAACAAAATCAACACTACTCAAACAGCAGAAGAACTCAAACTCTTGTTTAAACCAGGAACTGAATTTGGATTCAATGCTATCCTTGAGCTCGAAAATTCAGAAATTGAGACACCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trigger_N

Protein Analysis

221

Amino Acids

24.48

Weight (kDa)

9.32

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 306
AciI CCGC 2 cut(s) 149, 255
AcsI RAATTY 2 cut(s) 605, 637
AfaI GTAC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 383
AflIII ACRYGT 1 cut(s) 86
AgsI TTSAA 3 cut(s) 250, 532, 616
AjnI CCWGG 2 cut(s) 176, 595
AluBI AGCT 7 cut(s) 66, 136, 194, 432, 495, 631, 660
AluI AGCT 7 cut(s) 66, 136, 194, 432, 495, 631, 660
Alw21I GWGCWC 2 cut(s) 82, 633
Alw26I GTCTC 1 cut(s) 644
AlwNI CAGNNNCTG 1 cut(s) 602
Ama87I CYCGRG 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 2 cut(s) 605, 637
AspS9I GGNCC 1 cut(s) 421
AsuC2I CCSGG 1 cut(s) 384
AsuHPI GGTGA 1 cut(s) 518
AvaI CYCGRG 1 cut(s) 276
AvaII GGWCC 1 cut(s) 421
BaeI ACNNNNGTAYC 1 cut(s) 30
BanII GRGCYC 1 cut(s) 633
Bbv12I GWGCWC 2 cut(s) 82, 633
BbvI GCAGC 1 cut(s) 203
BciT130I CCWGG 2 cut(s) 178, 597
BcnI CCSGG 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 644
BfmI CTRYAG 1 cut(s) 70
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 3 cut(s) 178, 384, 597
Bme18I GGWCC 1 cut(s) 421
BmeT110I CYCGRG 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 421
BmiI GGNNCC 1 cut(s) 423
BmrFI CCNGG 3 cut(s) 178, 384, 597
BmrI ACTGGG 1 cut(s) 324
BmsI GCATC 1 cut(s) 221
BmuI ACTGGG 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 647
BpuMI CCSGG 1 cut(s) 384
BsaJI CCNNGG 2 cut(s) 34, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse1I ACTGG 3 cut(s) 28, 319, 377
BseBI CCWGG 2 cut(s) 178, 597
BseDI CCNNGG 2 cut(s) 34, 501
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 1 cut(s) 383
BseNI ACTGG 3 cut(s) 28, 319, 377
BseXI GCAGC 1 cut(s) 203
BsiHKAI GWGCWC 2 cut(s) 82, 633
BsiHKCI CYCGRG 1 cut(s) 276
BsiSI CCGG 1 cut(s) 384
BslFI GGGAC 3 cut(s) 16, 259, 407
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 1 cut(s) 644
BsmFI GGGAC 3 cut(s) 16, 259, 407
BsoBI CYCGRG 1 cut(s) 276
Bsp1286I GDGCHC 2 cut(s) 82, 633
Bsp19I CCATGG 1 cut(s) 501
BspACI CCGC 2 cut(s) 149, 255
BspLI GGNNCC 1 cut(s) 423
BspMAI CTGCAG 1 cut(s) 74
BsrI ACTGG 3 cut(s) 28, 319, 377
BssECI CCNNGG 2 cut(s) 34, 501
BssT1I CCWWGG 2 cut(s) 34, 501
Bst2UI CCWGG 2 cut(s) 178, 597
Bst4CI ACNGT 2 cut(s) 10, 51
BstAPI GCANNNNNTGC 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 134, 364
BstDSI CCRYGG 1 cut(s) 501
BstF5I GGATG 1 cut(s) 325
BstMAI GTCTC 1 cut(s) 644
BstMWI GCNNNNNNNGC 2 cut(s) 218, 368
BstNI CCWGG 2 cut(s) 178, 597
BstNSI RCATGY 1 cut(s) 90
BstSCI CCNGG 3 cut(s) 176, 382, 595
BstSFI CTRYAG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 203
BstXI CCANNNNNNTGG 1 cut(s) 35
BtgI CCRYGG 1 cut(s) 501
BtsCI GGATG 1 cut(s) 325
Cac8I GCNNGC 2 cut(s) 134, 364
CaiI CAGNNNCTG 1 cut(s) 602
Cfr13I GGNCC 1 cut(s) 421
Csp6I GTAC 1 cut(s) 14
CviAII CATG 3 cut(s) 87, 164, 502
CviJI RGCY 9 cut(s) 40, 66, 136, 181, 194, 432, 495, 631, 660
CviKI_1 RGCY 9 cut(s) 40, 66, 136, 181, 194, 432, 495, 631, 660
CviQI GTAC 1 cut(s) 14
DraI TTTAAA 1 cut(s) 592
Ecl136II GAGCTC 1 cut(s) 631
Eco130I CCWWGG 2 cut(s) 34, 501
Eco24I GRGCYC 1 cut(s) 633
Eco47I GGWCC 1 cut(s) 421
Eco53kI GAGCTC 1 cut(s) 631
Eco88I CYCGRG 1 cut(s) 276
EcoICRI GAGCTC 1 cut(s) 631
EcoO109I RGGNCCY 1 cut(s) 421
EcoRII CCWGG 2 cut(s) 176, 595
EcoT14I CCWWGG 2 cut(s) 34, 501
EcoT38I GRGCYC 1 cut(s) 633
ErhI CCWWGG 2 cut(s) 34, 501
FaeI CATG 3 cut(s) 90, 167, 505
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FaqI GGGAC 3 cut(s) 16, 259, 407
FatI CATG 3 cut(s) 86, 163, 501
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 1 cut(s) 332
FriOI GRGCYC 1 cut(s) 633
Fsp4HI GCNGC 1 cut(s) 192
GluI GCNGC 1 cut(s) 192
HapII CCGG 1 cut(s) 384
Hin1II CATG 3 cut(s) 90, 167, 505
HindIII AAGCTT 1 cut(s) 430
HinfI GANTC 3 cut(s) 145, 272, 612
HpaII CCGG 1 cut(s) 384
HphI GGTGA 1 cut(s) 518
Hpy166II GTNNAC 2 cut(s) 141, 307
Hpy188I TCNGA 1 cut(s) 643
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 2 cut(s) 141, 307
HpyAV CCTTC 3 cut(s) 224, 514, 532
HpyCH4III ACNGT 2 cut(s) 10, 51
HpyCH4V TGCA 4 cut(s) 72, 120, 191, 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 368
Hsp92II CATG 3 cut(s) 90, 167, 505
LmnI GCTCC 1 cut(s) 457
Lsp1109I GCAGC 1 cut(s) 203
LweI GCATC 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 463
MboII GAAGA 2 cut(s) 293, 584
MhlI GDGCHC 2 cut(s) 82, 633
MluCI AATT 3 cut(s) 605, 637, 645
MlyI GAGTC 2 cut(s) 154, 281
MnlI CCTC 3 cut(s) 28, 202, 398
MseI TTAA 1 cut(s) 591
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 1 cut(s) 384
MspR9I CCNGG 3 cut(s) 178, 384, 597
MssI GTTTAAAC 1 cut(s) 592
MvaI CCWGG 2 cut(s) 178, 597
MwoI GCNNNNNNNGC 2 cut(s) 218, 368
NciI CCSGG 1 cut(s) 384
NcoI CCATGG 1 cut(s) 501
NlaIII CATG 3 cut(s) 90, 167, 505
NlaIV GGNNCC 1 cut(s) 423
NmuCI GTSAC 1 cut(s) 463
NspI RCATGY 1 cut(s) 90
PciI ACATGT 1 cut(s) 86
PfeI GAWTC 1 cut(s) 612
PfoI TCCNGGA 1 cut(s) 382
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 2 cut(s) 153, 280
PmeI GTTTAAAC 1 cut(s) 592
PpsI GAGTC 2 cut(s) 153, 280
PpuMI RGGWCCY 1 cut(s) 421
PscI ACATGT 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 633
Psp5II RGGWCCY 1 cut(s) 421
Psp6I CCWGG 2 cut(s) 176, 595
PspGI CCWGG 2 cut(s) 176, 595
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 1 cut(s) 421
PspPPI RGGWCCY 1 cut(s) 421
PstI CTGCAG 1 cut(s) 74
PstNI CAGNNNCTG 1 cut(s) 602
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
SacI GAGCTC 1 cut(s) 633
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 1 cut(s) 192
Sau96I GGNCC 1 cut(s) 421
SchI GAGTC 2 cut(s) 154, 281
ScrFI CCNGG 3 cut(s) 178, 384, 597
SduI GDGCHC 2 cut(s) 82, 633
SfaNI GCATC 1 cut(s) 221
SfcI CTRYAG 1 cut(s) 70
SinI GGWCC 1 cut(s) 421
SmlI CTYRAG 1 cut(s) 626
SmoI CTYRAG 1 cut(s) 626
Sse9I AATT 3 cut(s) 605, 637, 645
SsiI CCGC 2 cut(s) 149, 255
SstI GAGCTC 1 cut(s) 633
StyD4I CCNGG 3 cut(s) 176, 382, 595
StyI CCWWGG 2 cut(s) 34, 501
TaaI ACNGT 2 cut(s) 10, 51
TaqI TCGA 1 cut(s) 633
TasI AATT 3 cut(s) 605, 637, 645
TfiI GAWTC 1 cut(s) 612
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 463
VpaK11BI GGWCC 1 cut(s) 421
XapI RAATTY 2 cut(s) 605, 637
XceI RCATGY 1 cut(s) 90
XmiI GTMKAC 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.