Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0011553

Physical Location & Seq

Genomic Coordinates Reverse (-)

21059955 .. 21062347

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g21620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTCTAGACAAACAGAGACTCTAGTTGCAACCCGCATTTTACAACACCAAAGCGGCATGGCGATGGCGTCAATGTCTTTGACGATGAACACCACCACGACGATGACGACATCAAAAGTATCTGGATTCCAGCCCCTTTGGCTTCCCAAACGGCATTTTTCTGTTTCTAATCCTGTCAGAAGATACTGCGGTTCCCTTCATCCATCATGCCAATACGCTTCACAGAATCCCAATCTTACGGTTGAGAATCCTAATAACTCTGGCCACGCTCGTTTATCCAGCCCGATATATGCAGCTGCTGGTTCAGGTTTAGAGGCATCAATTGGAGATGCACAAGGCAATCTGATAACCTTGAAAACAGCAAAGATTGTTGTAGAGTCCCAAGACGACAATAAGATACAGGTTAGAGTAGACTTGACTGGAGACGACACACAAAAAGTTTTTGATAGGGTTTTGACAAATTTGGCACGCACAGCACCACCAGTTCCTGGATTTCGCAGACAAAAAGGAGGAAAAACATCCAAGGTCCCGAAAAGCTTTCTGTTGGATATACTTGGTAAGGAGCGTGTCACCAAGTTTGTCATACAAGAAATAATAAACTCTACTATGGCTGATTATGTAAACAAGGAAAACTTGACTGTGAAGGAAAACAAAGTCAGCACCACTCAAACAGCTGAGGAGCTCAAACTGTTGTTCACTCCAGGAAATGAATTTGGATTCAATGCTACACTCGAGCTCGAAACTTCAGAATTGGAGACGCCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trigger_N

Protein Analysis

256

Amino Acids

27.96

Weight (kDa)

9.04

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011553)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10500 FvH4_4g10500 FvH4_4g10500 FvH4_4g10500 FvH4_4g10500 FvH4_4g10500
malus_domestica	MD08G1249800.v1.1
prunus_persica	Prupe.1G586900_v2.0.a1 Prupe.1G586900_v2.0.a1
pyrus_communis	pycom08g21620
rosa_chinensis	RchiOBHm_Chr4g0406061
rosa_laevigata	RLG00000008799
rosa_multiflora	Rmu_sc0001630.1_g000028
rosa_roxburghii	Rroxscaffold_5G00350800
rosa_rugosa	Rorug04G0065100
rosa_samantha	Rh4AG135600 Rh4BG132700 Rh4CG143500 Rh4DG130700
rosa_wichuraiana	Rw4G011050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccI	GTMKAC	1 cut(s)	411
AciI	CCGC	3 cut(s)	34, 54, 189
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	2 cut(s)	460, 710
AcuI	CTGAAG	1 cut(s)	729
AcyI	GRCGYC	2 cut(s)	68, 758
AfiI	CCNNNNNNNGG	1 cut(s)	488
AgsI	TTSAA	2 cut(s)	355, 721
AjnI	CCWGG	2 cut(s)	487, 700
AluBI	AGCT	6 cut(s)	296, 537, 674, 682, 736, 765
AluI	AGCT	6 cut(s)	296, 537, 674, 682, 736, 765
Alw21I	GWGCWC	2 cut(s)	684, 738
Alw26I	GTCTC	3 cut(s)	11, 417, 749
AlwNI	CAGNNNCTG	2 cut(s)	299, 488
Ama87I	CYCGRG	1 cut(s)	731
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	2 cut(s)	293, 296
ApoI	RAATTY	2 cut(s)	460, 710
AspS9I	GGNCC	1 cut(s)	526
AsuHPI	GGTGA	1 cut(s)	562
AvaI	CYCGRG	1 cut(s)	731
AvaII	GGWCC	1 cut(s)	526
BaeI	ACNNNNGTAYC	2 cut(s)	175, 208
BalI	TGGCCA	1 cut(s)	264
BanII	GRGCYC	2 cut(s)	684, 738
Bbv12I	GWGCWC	2 cut(s)	684, 738
BbvCI	CCTCAGC	1 cut(s)	675
BbvI	GCAGC	2 cut(s)	283, 305
BccI	CCATC	2 cut(s)	58, 211
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	2 cut(s)	489, 702
BcoDI	GTCTC	3 cut(s)	11, 417, 749
BfaI	CTAG	2 cut(s)	6, 23
BglI	GCCNNNNNGGC	1 cut(s)	139
BisI	GCNGC	3 cut(s)	55, 294, 297
BlsI	GCNGC	3 cut(s)	56, 295, 298
Bme1390I	CCNGG	2 cut(s)	489, 702
Bme18I	GGWCC	1 cut(s)	526
BmeT110I	CYCGRG	1 cut(s)	731
BmgT120I	GGNCC	1 cut(s)	526
BmiI	GGNNCC	2 cut(s)	193, 528
BmrFI	CCNGG	2 cut(s)	489, 702
BmsI	GCATC	2 cut(s)	319, 326
BpmI	CTGGAG	2 cut(s)	441, 684
Bpu10I	CCTNAGC	1 cut(s)	675
BsaHI	GRCGYC	2 cut(s)	68, 758
BsaJI	CCNNGG	1 cut(s)	522
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse1I	ACTGG	2 cut(s)	424, 482
BseBI	CCWGG	2 cut(s)	489, 702
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	2 cut(s)	199, 518
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMII	CTCAG	1 cut(s)	666
BseNI	ACTGG	2 cut(s)	424, 482
BseRI	GAGGAG	1 cut(s)	692
BseXI	GCAGC	2 cut(s)	283, 305
BshFI	GGCC	1 cut(s)	264
BsiHKAI	GWGCWC	2 cut(s)	684, 738
BsiHKCI	CYCGRG	1 cut(s)	731
BslFI	GGGAC	2 cut(s)	364, 512
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmAI	GTCTC	3 cut(s)	11, 417, 749
BsmBI	CGTCTC	2 cut(s)	417, 749
BsmFI	GGGAC	2 cut(s)	364, 512
BsnI	GGCC	1 cut(s)	264
BsoBI	CYCGRG	1 cut(s)	731
Bsp1286I	GDGCHC	2 cut(s)	684, 738
BspACI	CCGC	3 cut(s)	34, 54, 189
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	1 cut(s)	667
BspLI	GGNNCC	2 cut(s)	193, 528
BsrI	ACTGG	2 cut(s)	424, 482
BssECI	CCNNGG	1 cut(s)	522
BssNI	GRCGYC	2 cut(s)	68, 758
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	2 cut(s)	489, 702
Bst4CI	ACNGT	3 cut(s)	241, 640, 690
BstACI	GRCGYC	2 cut(s)	68, 758
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	1 cut(s)	675
BstF5I	GGATG	2 cut(s)	199, 518
BstMAI	GTCTC	3 cut(s)	11, 417, 749
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 473
BstNI	CCWGG	2 cut(s)	489, 702
BstSCI	CCNGG	2 cut(s)	487, 700
BstV1I	GCAGC	2 cut(s)	283, 305
BsuRI	GGCC	1 cut(s)	264
BtgZI	GCGATG	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	199, 518
Cac8I	GCNNGC	1 cut(s)	469
CaiI	CAGNNNCTG	2 cut(s)	299, 488
Cfr13I	GGNCC	1 cut(s)	526
CseI	GACGC	1 cut(s)	57
CviAII	CATG	2 cut(s)	58, 207
DdeI	CTNAG	1 cut(s)	675
EaeI	YGGCCR	1 cut(s)	262
Ecl136II	GAGCTC	2 cut(s)	682, 736
Eco130I	CCWWGG	1 cut(s)	522
Eco24I	GRGCYC	2 cut(s)	684, 738
Eco47I	GGWCC	1 cut(s)	526
Eco53kI	GAGCTC	2 cut(s)	682, 736
Eco57I	CTGAAG	1 cut(s)	729
Eco88I	CYCGRG	1 cut(s)	731
EcoICRI	GAGCTC	2 cut(s)	682, 736
EcoO109I	RGGNCCY	1 cut(s)	526
EcoRII	CCWGG	2 cut(s)	487, 700
EcoT14I	CCWWGG	1 cut(s)	522
EcoT38I	GRGCYC	2 cut(s)	684, 738
ErhI	CCWWGG	1 cut(s)	522
Esp3I	CGTCTC	2 cut(s)	417, 749
FaeI	CATG	2 cut(s)	61, 210
FaiI	YATR	8 cut(s)	59, 208, 289, 291, 551, 584, 608, 618
FalI	AAGNNNNNCTT	2 cut(s)	617, 649
FaqI	GGGAC	2 cut(s)	364, 512
FatI	CATG	2 cut(s)	57, 206
FauI	CCCGC	1 cut(s)	41
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	3 cut(s)	55, 294, 297
FokI	GGATG	2 cut(s)	186, 505
FriOI	GRGCYC	2 cut(s)	684, 738
Fsp4HI	GCNGC	3 cut(s)	55, 294, 297
FspBI	CTAG	2 cut(s)	6, 23
GluI	GCNGC	3 cut(s)	55, 294, 297
GsuI	CTGGAG	2 cut(s)	441, 684
HaeIII	GGCC	1 cut(s)	264
HgaI	GACGC	1 cut(s)	57
Hin1I	GRCGYC	2 cut(s)	68, 758
Hin1II	CATG	2 cut(s)	61, 210
HindIII	AAGCTT	1 cut(s)	535
HinfI	GANTC	6 cut(s)	19, 126, 226, 247, 377, 717
HphI	GGTGA	1 cut(s)	562
Hpy166II	GTNNAC	3 cut(s)	412, 622, 696
Hpy188I	TCNGA	3 cut(s)	179, 345, 748
Hpy188III	TCNNGA	3 cut(s)	6, 123, 529
Hpy8I	GTNNAC	3 cut(s)	412, 622, 696
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	206, 637
HpyCH4III	ACNGT	3 cut(s)	241, 640, 690
HpyCH4V	TGCA	3 cut(s)	29, 293, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 473
HpyF3I	CTNAG	1 cut(s)	675
Hsp92I	GRCGYC	2 cut(s)	68, 758
Hsp92II	CATG	2 cut(s)	61, 210
LmnI	GCTCC	2 cut(s)	562, 679
Lsp1109I	GCAGC	2 cut(s)	283, 305
LweI	GCATC	2 cut(s)	319, 326
MaeI	CTAG	2 cut(s)	6, 23
MaeIII	GTNAC	1 cut(s)	568
MboII	GAAGA	1 cut(s)	192
MfeI	CAATTG	1 cut(s)	321
MhlI	GDGCHC	2 cut(s)	684, 738
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	4 cut(s)	321, 460, 710, 749
MluNI	TGGCCA	1 cut(s)	264
MlyI	GAGTC	2 cut(s)	13, 386
MmeI	TCCRAC	1 cut(s)	525
MnlI	CCTC	3 cut(s)	307, 503, 670
Mox20I	TGGCCA	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	264
MslI	CAYNNNNRTG	2 cut(s)	62, 101
Msp20I	TGGCCA	1 cut(s)	264
MspA1I	CMGCKG	2 cut(s)	296, 674
MspR9I	CCNGG	2 cut(s)	489, 702
MunI	CAATTG	1 cut(s)	321
MvaI	CCWGG	2 cut(s)	489, 702
MwoI	GCNNNNNNNGC	2 cut(s)	139, 473
NlaIII	CATG	2 cut(s)	61, 210
NlaIV	GGNNCC	2 cut(s)	193, 528
NmuCI	GTSAC	1 cut(s)	568
PaeR7I	CTCGAG	1 cut(s)	731
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PfeI	GAWTC	4 cut(s)	126, 226, 247, 717
PflMI	CCANNNNNTGG	1 cut(s)	488
PfoI	TCCNGGA	2 cut(s)	487, 700
PkrI	GCNGC	3 cut(s)	56, 295, 298
PleI	GAGTC	2 cut(s)	13, 385
PpsI	GAGTC	2 cut(s)	13, 385
PpuMI	RGGWCCY	1 cut(s)	526
Psp124BI	GAGCTC	2 cut(s)	684, 738
Psp5II	RGGWCCY	1 cut(s)	526
Psp6I	CCWGG	2 cut(s)	487, 700
PspGI	CCWGG	2 cut(s)	487, 700
PspN4I	GGNNCC	2 cut(s)	193, 528
PspPI	GGNCC	1 cut(s)	526
PspPPI	RGGWCCY	1 cut(s)	526
PspXI	VCTCGAGB	1 cut(s)	731
PstNI	CAGNNNCTG	2 cut(s)	299, 488
PvuII	CAGCTG	2 cut(s)	296, 674
RseI	CAYNNNNRTG	2 cut(s)	62, 101
SacI	GAGCTC	2 cut(s)	684, 738
SatI	GCNGC	3 cut(s)	55, 294, 297
Sau96I	GGNCC	1 cut(s)	526
SchI	GAGTC	2 cut(s)	13, 386
ScrFI	CCNGG	2 cut(s)	489, 702
SduI	GDGCHC	2 cut(s)	684, 738
SfaNI	GCATC	2 cut(s)	319, 326
Sfr274I	CTCGAG	1 cut(s)	731
SinI	GGWCC	1 cut(s)	526
SlaI	CTCGAG	1 cut(s)	731
SmiMI	CAYNNNNRTG	2 cut(s)	62, 101
SmlI	CTYRAG	1 cut(s)	731
SmoI	CTYRAG	1 cut(s)	731
Sse9I	AATT	4 cut(s)	321, 460, 710, 749
SsiI	CCGC	3 cut(s)	34, 54, 189
SspMI	CTAG	2 cut(s)	6, 23
SstI	GAGCTC	2 cut(s)	684, 738
StyD4I	CCNGG	2 cut(s)	487, 700
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	3 cut(s)	241, 640, 690
TaqI	TCGA	2 cut(s)	732, 738
TasI	AATT	4 cut(s)	321, 460, 710, 749
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	4 cut(s)	126, 226, 247, 717
TseFI	GTSAC	1 cut(s)	568
TseI	GCWGC	2 cut(s)	293, 296
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	3 cut(s)	101, 188, 723
Van91I	CCANNNNNTGG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	526
XapI	RAATTY	2 cut(s)	460, 710
XbaI	TCTAGA	1 cut(s)	5
XhoI	CTCGAG	1 cut(s)	731
XmiI	GTMKAC	1 cut(s)	411
XspI	CTAG	2 cut(s)	6, 23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.