Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Reverse (-)

10071733 .. 10072921

Gene Structure 1189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0065100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGATGGTTACCTGTAAGGGAGTGAATACCTGGTCACCAGCAGAATCCCGGGATGAACTTCAAAGACCAAGATCTGGGAGAGGGCTCTCAATTAATCTTCATCGAATCAATGATCTACCAGAATATAGGGCTAGCCCTTCAGGACTATTAGCGGGAGATCCCCCAGAGAAATCGAAGAGCATGAGAAGGGTCCTGGCGGGTGATCGGAAGCAACAGTTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

74

Amino Acids

8.29

Weight (kDa)

9.85

Isoelectric Point (pI)

56.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	74
AciI	CCGC	2 cut(s)	152, 197
AclWI	GGATC	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	62
AjnI	CCWGG	2 cut(s)	29, 192
AjuI	GAANNNNNNNTTGG	1 cut(s)	200
AlwI	GGATC	1 cut(s)	152
Ama87I	CYCGRG	1 cut(s)	48
AseI	ATTAAT	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	190
AsuC2I	CCSGG	2 cut(s)	49, 50
AsuHPI	GGTGA	2 cut(s)	27, 212
AsuNHI	GCTAGC	1 cut(s)	131
AvaI	CYCGRG	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	87
BciT130I	CCWGG	2 cut(s)	31, 194
BcnI	CCSGG	2 cut(s)	49, 50
BfaI	CTAG	1 cut(s)	132
BglII	AGATCT	1 cut(s)	71
Bme1390I	CCNGG	4 cut(s)	31, 49, 50, 194
Bme18I	GGWCC	1 cut(s)	190
BmeT110I	CYCGRG	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	4 cut(s)	31, 49, 50, 194
BmtI	GCTAGC	1 cut(s)	135
BpuMI	CCSGG	2 cut(s)	49, 50
BsaJI	CCNNGG	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
BseBI	CCWGG	2 cut(s)	31, 194
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	74
BsoBI	CYCGRG	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	4 cut(s)	71, 112, 157, 202
BspACI	CCGC	2 cut(s)	152, 197
BspLI	GGNNCC	1 cut(s)	191
BspOI	GCTAGC	1 cut(s)	135
BspPI	GGATC	1 cut(s)	152
BspQI	GCTCTTC	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	4 cut(s)	71, 112, 157, 202
Bst2UI	CCWGG	2 cut(s)	31, 194
Bst4CI	ACNGT	1 cut(s)	216
Bst6I	CTCTTC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	133
BstEII	GGTNACC	2 cut(s)	7, 33
BstF5I	GGATG	1 cut(s)	58
BstKTI	GATC	4 cut(s)	74, 115, 160, 205
BstMBI	GATC	4 cut(s)	71, 112, 157, 202
BstNI	CCWGG	2 cut(s)	31, 194
BstPI	GGTNACC	2 cut(s)	7, 33
BstSCI	CCNGG	4 cut(s)	29, 47, 48, 192
BstX2I	RGATCY	2 cut(s)	71, 157
BstYI	RGATCY	2 cut(s)	71, 157
BtsCI	GGATG	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	190
Cfr9I	CCCGGG	1 cut(s)	48
CsiI	ACCWGGT	1 cut(s)	29
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	3 cut(s)	85, 131, 135
CviKI_1	RGCY	3 cut(s)	85, 131, 135
DpnI	GATC	4 cut(s)	73, 114, 159, 204
DpnII	GATC	4 cut(s)	71, 112, 157, 202
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	48
Eco91I	GGTNACC	2 cut(s)	7, 33
EcoO109I	RGGNCCY	1 cut(s)	190
EcoO65I	GGTNACC	2 cut(s)	7, 33
EcoRII	CCWGG	2 cut(s)	29, 192
EcoT38I	GRGCYC	1 cut(s)	87
FaeI	CATG	1 cut(s)	184
FaiI	YATR	2 cut(s)	126, 182
FatI	CATG	1 cut(s)	180
FauI	CCCGC	2 cut(s)	145, 190
FokI	GGATG	1 cut(s)	65
FriOI	GRGCYC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	132
HapII	CCGG	1 cut(s)	49
Hin1II	CATG	1 cut(s)	184
HinfI	GANTC	2 cut(s)	44, 105
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	2 cut(s)	27, 212
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	1 cut(s)	141
HpyAV	CCTTC	2 cut(s)	147, 180
HpyCH4III	ACNGT	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	71, 112, 157, 202
LguI	GCTCTTC	1 cut(s)	170
MabI	ACCWGGT	1 cut(s)	29
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	7, 33
MalI	GATC	4 cut(s)	73, 114, 159, 204
MboI	GATC	4 cut(s)	71, 112, 157, 202
MboII	GAAGA	2 cut(s)	89, 187
MflI	RGATCY	2 cut(s)	71, 157
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	1 cut(s)	74
MseI	TTAA	1 cut(s)	93
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	4 cut(s)	31, 49, 50, 194
MvaI	CCWGG	2 cut(s)	31, 194
NciI	CCSGG	2 cut(s)	49, 50
NdeII	GATC	4 cut(s)	71, 112, 157, 202
NheI	GCTAGC	1 cut(s)	131
NlaIII	CATG	1 cut(s)	184
NlaIV	GGNNCC	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	44, 105
PflMI	CCANNNNNTGG	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	190
PshBI	ATTAAT	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	2 cut(s)	29, 192
PspEI	GGTNACC	2 cut(s)	7, 33
PspGI	CCWGG	2 cut(s)	29, 192
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	190
PspPPI	RGGWCCY	1 cut(s)	190
PsuI	RGATCY	2 cut(s)	71, 157
SapI	GCTCTTC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	93
Sau3AI	GATC	4 cut(s)	71, 112, 157, 202
Sau96I	GGNCC	1 cut(s)	190
ScrFI	CCNGG	4 cut(s)	31, 49, 50, 194
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	2 cut(s)	14, 32
SexAI	ACCWGGT	1 cut(s)	29
SinI	GGWCC	1 cut(s)	190
SmaI	CCCGGG	1 cut(s)	50
Sse9I	AATT	1 cut(s)	90
SsiI	CCGC	2 cut(s)	152, 197
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	4 cut(s)	29, 47, 48, 192
TaaI	ACNGT	1 cut(s)	216
TaqI	TCGA	2 cut(s)	103, 173
TasI	AATT	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	44, 105
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	33
Tsp45I	GTSAC	1 cut(s)	33
TspDTI	ATGAA	2 cut(s)	69, 89
TspMI	CCCGGG	1 cut(s)	48
Van91I	CCANNNNNTGG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	190
VspI	ATTAAT	1 cut(s)	93
XmaI	CCCGGG	1 cut(s)	48
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.