Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Reverse (-)

38538227 .. 38539039

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024722

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCCACTGACCCAATACCAACACCCCAAAACGAAAACCCAAAGCCGCCTGAGCTGCCTCCGCTCCCAGACCCACCCGCTGCTTGCCCAATCGTGCCGGAAATTGCGCGACGCCAAGGCGCCGGAGTCCAGTGGCAGCACGACATGTTCTCGGATCAGGGAGCTGCCTATGCAGCCCCGGCTGGCAGAGCCTCCGCCATTGAAACTGGAACCAAGCTCTACATCTCTAATCCCGACTATGGCGTTTCCAACGAGGACATCAGGGAGCCTTCGCCATGTGATTCTGCTGTTCCTCCTGATCCCCTACCTCCTCGTCTTCCTCTTCTCCTTCGTCGCCGCCCTCCTCTTCGTCGAGTTCTGCTGCGGCGCCCGATCGCGCAAATGCGACTGCCATGGCTGCAAGGGCTTGAAGAAGGCCATGGAATTCGATTTGCAACTGCAGACGGAGGAGTGTGTCCAGACCGGGTCTAAGGAGATTAATAAGTTGCCCTGGAAGGGCGGGAGTGACACCAATCCCAATTACGAGTGTCTCCGGTCCGAGCTCAGGAAGATGGCTCCGCCGTCTTGCTTTTTCGAGCACGGTGTGGGTGCCCCGTCGCCAAGCTTGCAGGCTGGGGTCCCAAGCGAGGCCGCCGGCATAAGAAGTGACTTTTCCATTTTTACCCTCAAATGCAATTGCTTTTGTTTCTGGAATTTGTTTGTTTGTGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

26.41

Weight (kDa)

8.82

Isoelectric Point (pI)

66.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	118, 365, 587
AccBSI	CCGCTC	1 cut(s)	63
AccII	CGCG	2 cut(s)	108, 376
AciI	CCGC	9 cut(s)	46, 61, 77, 194, 336, 363, 498, 557, 630
AclWI	GGATC	2 cut(s)	161, 292
AcsI	RAATTY	2 cut(s)	422, 691
AcyI	GRCGYC	3 cut(s)	111, 119, 366
AdeI	CACNNNGTG	1 cut(s)	583
AfiI	CCNNNNNNNGG	4 cut(s)	238, 494, 543, 625
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	202, 409
AjnI	CCWGG	1 cut(s)	488
AluBI	AGCT	5 cut(s)	54, 163, 216, 541, 603
AluI	AGCT	5 cut(s)	54, 163, 216, 541, 603
Alw21I	GWGCWC	2 cut(s)	543, 579
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	2 cut(s)	161, 292
AoxI	GGCC	2 cut(s)	414, 627
ApeKI	GCWGC	7 cut(s)	54, 79, 135, 163, 172, 360, 396
ApoI	RAATTY	2 cut(s)	422, 691
AseI	ATTAAT	1 cut(s)	477
AspLEI	GCGC	4 cut(s)	108, 121, 368, 378
AspS9I	GGNCC	2 cut(s)	534, 616
AsuC2I	CCSGG	2 cut(s)	178, 463
AvaII	GGWCC	2 cut(s)	534, 616
BaeGI	GKGCMC	1 cut(s)	592
BanI	GGYRCC	3 cut(s)	118, 365, 587
BanII	GRGCYC	1 cut(s)	543
BbsI	GAAGAC	1 cut(s)	307
Bbv12I	GWGCWC	2 cut(s)	543, 579
BbvI	GCAGC	7 cut(s)	41, 66, 147, 150, 184, 347, 383
BccI	CCATC	1 cut(s)	544
BceAI	ACGGC	1 cut(s)	544
BciT130I	CCWGG	1 cut(s)	490
BcnI	CCSGG	2 cut(s)	178, 463
BcoDI	GTCTC	1 cut(s)	533
BfmI	CTRYAG	1 cut(s)	437
BfoI	RGCGCY	2 cut(s)	122, 369
Bme1390I	CCNGG	3 cut(s)	178, 463, 490
Bme18I	GGWCC	2 cut(s)	534, 616
BmgT120I	GGNCC	2 cut(s)	534, 616
BmiI	GGNNCC	8 cut(s)	120, 210, 266, 367, 555, 589, 617, 618
BmrFI	CCNGG	3 cut(s)	178, 463, 490
BpiI	GAAGAC	1 cut(s)	307
Bpu10I	CCTNAGC	2 cut(s)	50, 542
BpuMI	CCSGG	2 cut(s)	178, 463
BsaHI	GRCGYC	3 cut(s)	111, 119, 366
BsaJI	CCNNGG	5 cut(s)	114, 176, 391, 417, 488
BsaWI	WCCGGW	1 cut(s)	531
Bsc4I	CCNNNNNNNGG	4 cut(s)	238, 494, 543, 625
Bse118I	RCCGGY	1 cut(s)	632
Bse1I	ACTGG	2 cut(s)	129, 210
BseBI	CCWGG	1 cut(s)	490
BseDI	CCNNGG	5 cut(s)	114, 176, 391, 417, 488
BseLI	CCNNNNNNNGG	4 cut(s)	238, 494, 543, 625
BseMII	CTCAG	2 cut(s)	41, 556
BseNI	ACTGG	2 cut(s)	129, 210
BseRI	GAGGAG	3 cut(s)	299, 332, 461
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	7 cut(s)	41, 66, 147, 150, 184, 347, 383
BseYI	CCCAGC	1 cut(s)	611
Bsh1236I	CGCG	2 cut(s)	108, 376
Bsh1285I	CGRYCG	1 cut(s)	374
BshFI	GGCC	2 cut(s)	416, 629
BshNI	GGYRCC	3 cut(s)	118, 365, 587
BsiEI	CGRYCG	1 cut(s)	374
BsiHKAI	GWGCWC	2 cut(s)	543, 579
BsiSI	CCGG	6 cut(s)	97, 122, 178, 462, 532, 633
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	4 cut(s)	238, 494, 543, 625
BsmAI	GTCTC	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	2 cut(s)	416, 629
Bsp1286I	GDGCHC	3 cut(s)	543, 579, 592
Bsp143I	GATC	3 cut(s)	153, 297, 371
Bsp19I	CCATGG	2 cut(s)	391, 417
BspACI	CCGC	9 cut(s)	46, 61, 77, 194, 336, 363, 498, 557, 630
BspANI	GGCC	2 cut(s)	416, 629
BspCNI	CTCAG	2 cut(s)	42, 555
BspFNI	CGCG	2 cut(s)	108, 376
BspLI	GGNNCC	8 cut(s)	120, 210, 266, 367, 555, 589, 617, 618
BspMAI	CTGCAG	1 cut(s)	441
BspPI	GGATC	2 cut(s)	161, 292
BspT107I	GGYRCC	3 cut(s)	118, 365, 587
BsrBI	CCGCTC	1 cut(s)	63
BsrFI	RCCGGY	1 cut(s)	632
BsrI	ACTGG	2 cut(s)	129, 210
BssAI	RCCGGY	1 cut(s)	632
BssECI	CCNNGG	5 cut(s)	114, 176, 391, 417, 488
BssMI	GATC	3 cut(s)	153, 297, 371
BssNI	GRCGYC	3 cut(s)	111, 119, 366
BssT1I	CCWWGG	3 cut(s)	114, 391, 417
Bst2UI	CCWGG	1 cut(s)	490
Bst4CI	ACNGT	1 cut(s)	581
Bst6I	CTCTTC	2 cut(s)	326, 350
BstACI	GRCGYC	3 cut(s)	111, 119, 366
BstC8I	GCNNGC	5 cut(s)	84, 183, 605, 609, 634
BstDEI	CTNAG	3 cut(s)	50, 468, 542
BstDSI	CCRYGG	2 cut(s)	391, 417
BstFNI	CGCG	2 cut(s)	108, 376
BstH2I	RGCGCY	2 cut(s)	122, 369
BstHHI	GCGC	4 cut(s)	108, 121, 368, 378
BstKTI	GATC	3 cut(s)	156, 300, 374
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	3 cut(s)	153, 297, 371
BstMCI	CGRYCG	1 cut(s)	374
BstNI	CCWGG	1 cut(s)	490
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	3 cut(s)	176, 461, 488
BstSFI	CTRYAG	1 cut(s)	437
BstSLI	GKGCMC	1 cut(s)	592
BstUI	CGCG	2 cut(s)	108, 376
BstV1I	GCAGC	7 cut(s)	41, 66, 147, 150, 184, 347, 383
BstV2I	GAAGAC	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	416, 629
BtgI	CCRYGG	2 cut(s)	391, 417
BtsIMutI	CAGTG	2 cut(s)	5, 136
Cac8I	GCNNGC	5 cut(s)	84, 183, 605, 609, 634
CfoI	GCGC	4 cut(s)	108, 121, 368, 378
Cfr10I	RCCGGY	1 cut(s)	632
Cfr13I	GGNCC	2 cut(s)	534, 616
CpoI	CGGWCCG	1 cut(s)	534
CseI	GACGC	1 cut(s)	119
CspI	CGGWCCG	1 cut(s)	534
CviAII	CATG	4 cut(s)	144, 275, 392, 418
DdeI	CTNAG	3 cut(s)	50, 468, 542
DinI	GGCGCC	2 cut(s)	120, 367
DpnI	GATC	3 cut(s)	155, 299, 373
DpnII	GATC	3 cut(s)	153, 297, 371
DraIII	CACNNNGTG	1 cut(s)	583
Eam1104I	CTCTTC	2 cut(s)	326, 350
EarI	CTCTTC	2 cut(s)	326, 350
EciI	GGCGGA	2 cut(s)	183, 546
Ecl136II	GAGCTC	1 cut(s)	541
Eco130I	CCWWGG	3 cut(s)	114, 391, 417
Eco24I	GRGCYC	1 cut(s)	543
Eco47I	GGWCC	2 cut(s)	534, 616
Eco53kI	GAGCTC	1 cut(s)	541
EcoICRI	GAGCTC	1 cut(s)	541
EcoO109I	RGGNCCY	1 cut(s)	616
EcoRI	GAATTC	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	488
EcoT14I	CCWWGG	3 cut(s)	114, 391, 417
EcoT38I	GRGCYC	1 cut(s)	543
EgeI	GGCGCC	2 cut(s)	120, 367
EheI	GGCGCC	2 cut(s)	120, 367
ErhI	CCWWGG	3 cut(s)	114, 391, 417
FaeI	CATG	4 cut(s)	147, 278, 395, 421
FaiI	YATR	7 cut(s)	145, 170, 239, 276, 393, 419, 638
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	4 cut(s)	143, 274, 391, 417
FauI	CCCGC	2 cut(s)	84, 491
FriOI	GRGCYC	1 cut(s)	543
GlaI	GCGC	4 cut(s)	107, 120, 367, 377
GsaI	CCCAGC	1 cut(s)	615
HaeII	RGCGCY	2 cut(s)	122, 369
HaeIII	GGCC	2 cut(s)	416, 629
HapII	CCGG	6 cut(s)	97, 122, 178, 462, 532, 633
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	4 cut(s)	108, 121, 368, 378
Hin1I	GRCGYC	3 cut(s)	111, 119, 366
Hin1II	CATG	4 cut(s)	147, 278, 395, 421
Hin6I	GCGC	4 cut(s)	106, 119, 366, 376
HinP1I	GCGC	4 cut(s)	106, 119, 366, 376
HindIII	AAGCTT	1 cut(s)	601
HinfI	GANTC	2 cut(s)	125, 280
HpaII	CCGG	6 cut(s)	97, 122, 178, 462, 532, 633
Hpy188I	TCNGA	2 cut(s)	153, 538
Hpy188III	TCNNGA	5 cut(s)	232, 295, 457, 544, 688
Hpy99I	CGWCG	4 cut(s)	113, 335, 353, 598
HpyAV	CCTTC	4 cut(s)	278, 337, 406, 487
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4V	TGCA	6 cut(s)	172, 399, 433, 439, 607, 672
HpyF3I	CTNAG	3 cut(s)	50, 468, 542
Hsp92I	GRCGYC	3 cut(s)	111, 119, 366
Hsp92II	CATG	4 cut(s)	147, 278, 395, 421
HspAI	GCGC	4 cut(s)	106, 119, 366, 376
KasI	GGCGCC	2 cut(s)	118, 365
KflI	GGGWCCC	1 cut(s)	616
KroI	GCCGGC	1 cut(s)	632
KroNI	GCCGGC	1 cut(s)	634
Kzo9I	GATC	3 cut(s)	153, 297, 371
LmnI	GCTCC	4 cut(s)	68, 160, 264, 559
Lsp1109I	GCAGC	7 cut(s)	41, 66, 147, 150, 184, 347, 383
MaeIII	GTNAC	2 cut(s)	503, 644
MalI	GATC	3 cut(s)	155, 299, 373
MbiI	CCGCTC	1 cut(s)	63
MboI	GATC	3 cut(s)	153, 297, 371
MboII	GAAGA	5 cut(s)	307, 313, 337, 421, 559
MfeI	CAATTG	1 cut(s)	673
MhlI	GDGCHC	3 cut(s)	543, 579, 592
MluCI	AATT	5 cut(s)	101, 422, 517, 673, 691
Mly113I	GGCGCC	2 cut(s)	119, 366
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	272
MroNI	GCCGGC	1 cut(s)	632
MseI	TTAA	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	79
MspI	CCGG	6 cut(s)	97, 122, 178, 462, 532, 633
MspR9I	CCNGG	3 cut(s)	178, 463, 490
MunI	CAATTG	1 cut(s)	673
MvaI	CCWGG	1 cut(s)	490
MvnI	CGCG	2 cut(s)	108, 376
NaeI	GCCGGC	1 cut(s)	634
NarI	GGCGCC	2 cut(s)	119, 366
NciI	CCSGG	2 cut(s)	178, 463
NcoI	CCATGG	2 cut(s)	391, 417
NdeII	GATC	3 cut(s)	153, 297, 371
NgoMIV	GCCGGC	1 cut(s)	632
NlaIII	CATG	4 cut(s)	147, 278, 395, 421
NlaIV	GGNNCC	8 cut(s)	120, 210, 266, 367, 555, 589, 617, 618
NmuCI	GTSAC	2 cut(s)	503, 644
NspI	RCATGY	1 cut(s)	147
PciI	ACATGT	1 cut(s)	143
PdiI	GCCGGC	1 cut(s)	634
PfeI	GAWTC	1 cut(s)	280
PflFI	GACNNNGTC	1 cut(s)	463
Ple19I	CGATCG	1 cut(s)	374
PleI	GAGTC	1 cut(s)	133
PluTI	GGCGCC	2 cut(s)	122, 369
PpsI	GAGTC	1 cut(s)	133
PpuMI	RGGWCCY	1 cut(s)	616
PscI	ACATGT	1 cut(s)	143
PshBI	ATTAAT	1 cut(s)	477
Psp124BI	GAGCTC	1 cut(s)	543
Psp5II	RGGWCCY	1 cut(s)	616
Psp6I	CCWGG	1 cut(s)	488
PspFI	CCCAGC	1 cut(s)	611
PspGI	CCWGG	1 cut(s)	488
PspN4I	GGNNCC	8 cut(s)	120, 210, 266, 367, 555, 589, 617, 618
PspPI	GGNCC	2 cut(s)	534, 616
PspPPI	RGGWCCY	1 cut(s)	616
PstI	CTGCAG	1 cut(s)	441
PsyI	GACNNNGTC	1 cut(s)	463
PvuI	CGATCG	1 cut(s)	374
Rsr2I	CGGWCCG	1 cut(s)	534
RsrII	CGGWCCG	1 cut(s)	534
SacI	GAGCTC	1 cut(s)	543
SaqAI	TTAA	1 cut(s)	477
Sau3AI	GATC	3 cut(s)	153, 297, 371
Sau96I	GGNCC	2 cut(s)	534, 616
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	3 cut(s)	178, 463, 490
SduI	GDGCHC	3 cut(s)	543, 579, 592
SetI	ASST	6 cut(s)	56, 165, 218, 309, 543, 605
SfcI	CTRYAG	1 cut(s)	437
SfoI	GGCGCC	2 cut(s)	120, 367
SinI	GGWCC	2 cut(s)	534, 616
Sse9I	AATT	5 cut(s)	101, 422, 517, 673, 691
SsiI	CCGC	9 cut(s)	46, 61, 77, 194, 336, 363, 498, 557, 630
SspDI	GGCGCC	2 cut(s)	118, 365
SstI	GAGCTC	1 cut(s)	543
StyD4I	CCNGG	3 cut(s)	176, 461, 488
StyI	CCWWGG	3 cut(s)	114, 391, 417
TaaI	ACNGT	1 cut(s)	581
TaqI	TCGA	3 cut(s)	351, 426, 573
TasI	AATT	5 cut(s)	101, 422, 517, 673, 691
TauI	GCSGC	4 cut(s)	48, 338, 366, 632
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	2 cut(s)	12, 136
TseFI	GTSAC	2 cut(s)	503, 644
TseI	GCWGC	7 cut(s)	54, 79, 135, 163, 172, 360, 396
Tsp45I	GTSAC	2 cut(s)	503, 644
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	2 cut(s)	12, 136
Tth111I	GACNNNGTC	1 cut(s)	463
VpaK11BI	GGWCC	2 cut(s)	534, 616
VspI	ATTAAT	1 cut(s)	477
XapI	RAATTY	2 cut(s)	422, 691
XceI	RCATGY	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.