Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Forward (+)

1871558 .. 1874044

Gene Structure 2487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCTCCATCTCCTTCTTCTCTCCGACGAAGAACATTCCACCACCAATAGCATGCCCCCTTCCTCCTCCGCCTCTAGATCCGCCTCCAATCACAGCTCCTCTTCCTCCTCCTCCTCCTCCTCTCTCCACCTCTGCAAGCACTCTCCTTCCGCGACTCTCGACCTCCTCATCCTAATCCTCGTCCTCTTCTCCGGCGCTTTCCTCCTCTCCTCTTACTTCTCCTATCTCTTCCACTCCTTTTCTCTCCTCTCCTCTCACTTCCCTTCCCTCTCCTCCTTGATCTTCTCCGACGATGAAGATCTCTCCTCGATCCCTCCCGCTTCCTACTTCTTCGCCTTCGCCGTCTTCTTCGCCGCTTCAATTGCGTTTCTCGACCTTTGTTGTGGACCCAGATCGAGGAAGTGTCGGAATCCCAAGTGTAAAGGTTTGAAGAAAGCGATGGAGTTTGATTTGCAATTGCAGACGGAGGAATGTGTTAAATCTGGAGCTACTAAGGAGATCGATCGATTGCCATGGAAAGGAGGTAGTGAGAGCAATCCTGATTACGAGTGTTTGAGGGCTGAGCTTAGAAGGATGGCTCCGCCTAATGGTCGTGCTGTTTTACTTTTCCGATCTAGATGTGGTTGCCCTGTTGCTAAGCTTGAAGGTTGGGGTCCTAAACGAGGCCGGCGTCATAAAAAATCGCAAGCGAACTTGGCTCTGAAGGGAGGGGTCGACCATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

26.47

Weight (kDa)

9.1

Isoelectric Point (pI)

63.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	714
AccII	CGCG	1 cut(s)	152
AciI	CCGC	6 cut(s)	69, 81, 150, 318, 354, 581
AclWI	GGATC	2 cut(s)	72, 304
AcuI	CTGAAG	1 cut(s)	722
AcyI	GRCGYC	1 cut(s)	670
AfiI	CCNNNNNNNGG	4 cut(s)	396, 518, 587, 662
AgsI	TTSAA	3 cut(s)	360, 430, 644
AluBI	AGCT	4 cut(s)	96, 488, 565, 640
AluI	AGCT	4 cut(s)	96, 488, 565, 640
AlwI	GGATC	2 cut(s)	72, 304
AoxI	GGCC	1 cut(s)	664
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	2 cut(s)	386, 653
AvaII	GGWCC	2 cut(s)	386, 653
BbsI	GAAGAC	1 cut(s)	337
BccI	CCATC	3 cut(s)	15, 433, 568
BceAI	ACGGC	1 cut(s)	326
BfaI	CTAG	2 cut(s)	75, 615
BfoI	RGCGCY	1 cut(s)	198
BglII	AGATCT	1 cut(s)	298
BisI	GCNGC	1 cut(s)	354
BlpI	GCTNAGC	2 cut(s)	561, 636
BlsI	GCNGC	1 cut(s)	355
Bme18I	GGWCC	2 cut(s)	386, 653
BmgT120I	GGNCC	2 cut(s)	386, 653
BmiI	GGNNCC	3 cut(s)	388, 579, 654
BpiI	GAAGAC	1 cut(s)	337
BpmI	CTGGAG	1 cut(s)	504
Bpu1102I	GCTNAGC	2 cut(s)	561, 636
Bsa29I	ATCGAT	2 cut(s)	501, 505
BsaBI	GATNNNNATC	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	670
BsaJI	CCNNGG	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	4 cut(s)	396, 518, 587, 662
Bse118I	RCCGGY	1 cut(s)	666
Bse8I	GATNNNNATC	1 cut(s)	297
BseCI	ATCGAT	2 cut(s)	501, 505
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	2 cut(s)	168, 579
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	4 cut(s)	396, 518, 587, 662
BseMII	CTCAG	1 cut(s)	552
Bsh1236I	CGCG	1 cut(s)	152
Bsh1285I	CGRYCG	1 cut(s)	505
BshFI	GGCC	1 cut(s)	666
BshVI	ATCGAT	2 cut(s)	501, 505
BsiEI	CGRYCG	1 cut(s)	505
BsiSI	CCGG	2 cut(s)	192, 667
BslI	CCNNNNNNNGG	4 cut(s)	396, 518, 587, 662
BsnI	GGCC	1 cut(s)	666
Bsp143I	GATC	8 cut(s)	77, 279, 298, 309, 392, 498, 502, 611
Bsp1720I	GCTNAGC	2 cut(s)	561, 636
Bsp19I	CCATGG	1 cut(s)	512
BspACI	CCGC	6 cut(s)	69, 81, 150, 318, 354, 581
BspANI	GGCC	1 cut(s)	666
BspCNI	CTCAG	1 cut(s)	553
BspDI	ATCGAT	2 cut(s)	501, 505
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	3 cut(s)	388, 579, 654
BspPI	GGATC	2 cut(s)	72, 304
BsrFI	RCCGGY	1 cut(s)	666
BssAI	RCCGGY	1 cut(s)	666
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	8 cut(s)	77, 279, 298, 309, 392, 498, 502, 611
BssNI	GRCGYC	1 cut(s)	670
BssT1I	CCWWGG	1 cut(s)	512
Bst6I	CTCTTC	3 cut(s)	106, 191, 233
BstACI	GRCGYC	1 cut(s)	670
BstC8I	GCNNGC	4 cut(s)	53, 137, 668, 687
BstDEI	CTNAG	4 cut(s)	492, 561, 566, 636
BstDSI	CCRYGG	1 cut(s)	512
BstENI	CCTNNNNNAGG	1 cut(s)	660
BstF5I	GGATG	2 cut(s)	168, 579
BstFNI	CGCG	1 cut(s)	152
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	8 cut(s)	80, 282, 301, 312, 395, 501, 505, 614
BstMBI	GATC	8 cut(s)	77, 279, 298, 309, 392, 498, 502, 611
BstMCI	CGRYCG	1 cut(s)	505
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 695
BstNSI	RCATGY	1 cut(s)	55
BstUI	CGCG	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	337
BstX2I	RGATCY	2 cut(s)	77, 298
BstYI	RGATCY	2 cut(s)	77, 298
Bsu15I	ATCGAT	2 cut(s)	501, 505
BsuRI	GGCC	1 cut(s)	666
BsuTUI	ATCGAT	2 cut(s)	501, 505
BtgI	CCRYGG	1 cut(s)	512
BtgZI	GCGATG	2 cut(s)	452, 704
BtsCI	GGATG	2 cut(s)	168, 579
Cac8I	GCNNGC	4 cut(s)	53, 137, 668, 687
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	666
Cfr13I	GGNCC	2 cut(s)	386, 653
ClaI	ATCGAT	2 cut(s)	501, 505
CseI	GACGC	1 cut(s)	659
CviAII	CATG	2 cut(s)	52, 513
CviJI	RGCY	8 cut(s)	96, 488, 560, 565, 578, 640, 666, 698
CviKI_1	RGCY	8 cut(s)	96, 488, 560, 565, 578, 640, 666, 698
DdeI	CTNAG	4 cut(s)	492, 561, 566, 636
DpnI	GATC	8 cut(s)	79, 281, 300, 311, 394, 500, 504, 613
DpnII	GATC	8 cut(s)	77, 279, 298, 309, 392, 498, 502, 611
Eam1104I	CTCTTC	3 cut(s)	106, 191, 233
EarI	CTCTTC	3 cut(s)	106, 191, 233
EciI	GGCGGA	3 cut(s)	58, 70, 570
Eco130I	CCWWGG	1 cut(s)	512
Eco47I	GGWCC	2 cut(s)	386, 653
Eco57I	CTGAAG	1 cut(s)	722
EcoNI	CCTNNNNNAGG	1 cut(s)	660
EcoO109I	RGGNCCY	1 cut(s)	653
EcoT14I	CCWWGG	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	512
FaeI	CATG	2 cut(s)	55, 516
FaiI	YATR	3 cut(s)	53, 514, 675
FatI	CATG	2 cut(s)	51, 512
FauI	CCCGC	1 cut(s)	325
FblI	GTMKAC	1 cut(s)	714
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	2 cut(s)	155, 586
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	2 cut(s)	75, 615
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	1 cut(s)	354
GsuI	CTGGAG	1 cut(s)	504
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	666
HapII	CCGG	2 cut(s)	192, 667
HgaI	GACGC	1 cut(s)	659
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	670
Hin1II	CATG	2 cut(s)	55, 516
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	2 cut(s)	154, 409
HpaII	CCGG	2 cut(s)	192, 667
Hpy166II	GTNNAC	2 cut(s)	386, 715
Hpy188I	TCNGA	5 cut(s)	25, 289, 408, 611, 702
Hpy188III	TCNNGA	6 cut(s)	75, 158, 371, 483, 539, 615
Hpy8I	GTNNAC	2 cut(s)	386, 715
Hpy99I	CGWCG	2 cut(s)	29, 293
HpyAV	CCTTC	8 cut(s)	23, 69, 156, 273, 346, 564, 638, 697
HpyCH4V	TGCA	3 cut(s)	135, 454, 460
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 695
HpyF3I	CTNAG	4 cut(s)	492, 561, 566, 636
Hsp92I	GRCGYC	1 cut(s)	670
Hsp92II	CATG	2 cut(s)	55, 516
HspAI	GCGC	1 cut(s)	195
KroI	GCCGGC	1 cut(s)	666
KroNI	GCCGGC	1 cut(s)	668
Kzo9I	GATC	8 cut(s)	77, 279, 298, 309, 392, 498, 502, 611
LmnI	GCTCC	4 cut(s)	9, 101, 485, 583
LpnPI	CCDG	6 cut(s)	205, 403, 468, 552, 642, 680
MaeI	CTAG	2 cut(s)	75, 615
MalI	GATC	8 cut(s)	79, 281, 300, 311, 394, 500, 504, 613
MboI	GATC	8 cut(s)	77, 279, 298, 309, 392, 498, 502, 611
MfeI	CAATTG	2 cut(s)	360, 455
MflI	RGATCY	2 cut(s)	77, 298
MluCI	AATT	2 cut(s)	360, 455
MlyI	GAGTC	1 cut(s)	148
MmeI	TCCRAC	3 cut(s)	48, 312, 386
MroNI	GCCGGC	1 cut(s)	666
MseI	TTAA	1 cut(s)	477
MspI	CCGG	2 cut(s)	192, 667
MunI	CAATTG	2 cut(s)	360, 455
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	362, 695
NaeI	GCCGGC	1 cut(s)	668
NcoI	CCATGG	1 cut(s)	512
NdeII	GATC	8 cut(s)	77, 279, 298, 309, 392, 498, 502, 611
NgoMIV	GCCGGC	1 cut(s)	666
NlaIII	CATG	2 cut(s)	55, 516
NlaIV	GGNNCC	3 cut(s)	388, 579, 654
NspI	RCATGY	1 cut(s)	55
PaeI	GCATGC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	2 cut(s)	339, 667
PdiI	GCCGGC	1 cut(s)	668
PfeI	GAWTC	1 cut(s)	409
PkrI	GCNGC	1 cut(s)	355
Ple19I	CGATCG	1 cut(s)	505
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	653
Psp5II	RGGWCCY	1 cut(s)	653
PspN4I	GGNNCC	3 cut(s)	388, 579, 654
PspPI	GGNCC	2 cut(s)	386, 653
PspPPI	RGGWCCY	1 cut(s)	653
PsuI	RGATCY	2 cut(s)	77, 298
PvuI	CGATCG	1 cut(s)	505
SalI	GTCGAC	1 cut(s)	713
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	8 cut(s)	77, 279, 298, 309, 392, 498, 502, 611
Sau96I	GGNCC	2 cut(s)	386, 653
SchI	GAGTC	1 cut(s)	148
SinI	GGWCC	2 cut(s)	386, 653
SphI	GCATGC	1 cut(s)	55
Sse9I	AATT	2 cut(s)	360, 455
SsiI	CCGC	6 cut(s)	69, 81, 150, 318, 354, 581
SspMI	CTAG	2 cut(s)	75, 615
StyI	CCWWGG	1 cut(s)	512
TaqI	TCGA	7 cut(s)	159, 308, 372, 395, 501, 505, 714
TasI	AATT	2 cut(s)	360, 455
TauI	GCSGC	1 cut(s)	356
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TspDTI	ATGAA	1 cut(s)	309
TspGWI	ACGGA	1 cut(s)	479
VpaK11BI	GGWCC	2 cut(s)	386, 653
XagI	CCTNNNNNAGG	1 cut(s)	660
XbaI	TCTAGA	2 cut(s)	74, 614
XceI	RCATGY	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	714
XspI	CTAG	2 cut(s)	75, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.