Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Reverse (-)

35642552 .. 35644490

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G025090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAATAATTTGGGGATTCAGGTGCCGGAGTCCAGTGGCAGCACAACATGTTCTTGGATCAGGGAGCCGCCTATGCAACCCCGGCTAGCAAAGCCTCTGCCATCGAAACTGGAACCAAGCTCTACATCTCTAATCCAAACTATGGCGTTTCCAACAAGGACATTAGAGAGCCTCCGCCATGTGATTCTATTGTTCCTCCCGATCCCCTACCTCCTCGGCTTCCTCTACCTCTTCACCGCCCTCATCCTTTGCGACCTCCACGGCTACAAGGGCTTAAAGAAGGCCATGGAATTCGATTTGCAACTACAGACGGAGGAGTGTGTCAAGACCGGGTCTAAGGAGATCGATAAGTTTCCCTGGAAAGGCGGGAGTGACGCCAATCCGGATTACGAGTGTCTCCAATCCAAGCTCTGGAAGATGGCTCCACACAATGGCTTTGCCGTCTTGATTTTTCGAGCATGGTGTGGGTGCCCCGTCACCAAGCTTGAAGGCTGGGGTCCCAAGCGAGGCCGCCAGCATAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.78

Weight (kDa)

9.17

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	22, 468
AccB7I	CCANNNNNTGG	3 cut(s)	142, 411, 431
AccIII	TCCGGA	1 cut(s)	382
AciI	CCGC	5 cut(s)	68, 175, 237, 366, 511
AclWI	GGATC	2 cut(s)	65, 196
AcsI	RAATTY	1 cut(s)	290
AcyI	GRCGYC	1 cut(s)	375
AfiI	CCNNNNNNNGG	5 cut(s)	142, 362, 411, 431, 506
AflIII	ACRYGT	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	488
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	3 cut(s)	120, 409, 484
AluI	AGCT	3 cut(s)	120, 409, 484
Alw26I	GTCTC	1 cut(s)	401
AlwI	GGATC	2 cut(s)	65, 196
Aor13HI	TCCGGA	1 cut(s)	382
AoxI	GGCC	2 cut(s)	282, 508
ApeKI	GCWGC	1 cut(s)	39
ApoI	RAATTY	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	497
AsuC2I	CCSGG	2 cut(s)	82, 331
AsuHPI	GGTGA	2 cut(s)	226, 469
AsuNHI	GCTAGC	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	497
BaeGI	GKGCMC	1 cut(s)	473
BanI	GGYRCC	2 cut(s)	22, 468
BbvI	GCAGC	1 cut(s)	51
BccI	CCATC	2 cut(s)	109, 412
BceAI	ACGGC	2 cut(s)	277, 425
BciT130I	CCWGG	1 cut(s)	358
BcnI	CCSGG	2 cut(s)	82, 331
BcoDI	GTCTC	1 cut(s)	401
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	305
BisI	GCNGC	3 cut(s)	40, 68, 511
BlsI	GCNGC	3 cut(s)	41, 69, 512
Bme1390I	CCNGG	3 cut(s)	82, 331, 358
Bme18I	GGWCC	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	7 cut(s)	24, 66, 114, 423, 470, 498, 499
BmrFI	CCNGG	3 cut(s)	82, 331, 358
BmtI	GCTAGC	1 cut(s)	89
BpuMI	CCSGG	2 cut(s)	82, 331
Bsa29I	ATCGAT	1 cut(s)	345
BsaHI	GRCGYC	1 cut(s)	375
BsaJI	CCNNGG	5 cut(s)	80, 214, 259, 285, 356
BsaWI	WCCGGW	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	5 cut(s)	142, 362, 411, 431, 506
Bse1I	ACTGG	2 cut(s)	33, 114
BseAI	TCCGGA	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	358
BseCI	ATCGAT	1 cut(s)	345
BseDI	CCNNGG	5 cut(s)	80, 214, 259, 285, 356
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	5 cut(s)	142, 362, 411, 431, 506
BseNI	ACTGG	2 cut(s)	33, 114
BseRI	GAGGAG	2 cut(s)	203, 329
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	1 cut(s)	51
BseYI	CCCAGC	1 cut(s)	492
BshFI	GGCC	2 cut(s)	284, 510
BshNI	GGYRCC	2 cut(s)	22, 468
BshVI	ATCGAT	1 cut(s)	345
BsiSI	CCGG	4 cut(s)	26, 82, 330, 383
BslFI	GGGAC	1 cut(s)	483
BslI	CCNNNNNNNGG	5 cut(s)	142, 362, 411, 431, 506
BsmAI	GTCTC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	483
BsnI	GGCC	2 cut(s)	284, 510
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp13I	TCCGGA	1 cut(s)	382
Bsp143I	GATC	3 cut(s)	57, 201, 342
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	5 cut(s)	68, 175, 237, 366, 511
BspANI	GGCC	2 cut(s)	284, 510
BspDI	ATCGAT	1 cut(s)	345
BspEI	TCCGGA	1 cut(s)	382
BspLI	GGNNCC	7 cut(s)	24, 66, 114, 423, 470, 498, 499
BspOI	GCTAGC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	65, 196
BspT107I	GGYRCC	2 cut(s)	22, 468
BsrI	ACTGG	2 cut(s)	33, 114
BssECI	CCNNGG	5 cut(s)	80, 214, 259, 285, 356
BssMI	GATC	3 cut(s)	57, 201, 342
BssNI	GRCGYC	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	236
BstACI	GRCGYC	1 cut(s)	375
BstC8I	GCNNGC	2 cut(s)	87, 515
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	2 cut(s)	259, 285
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	3 cut(s)	60, 204, 345
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	3 cut(s)	57, 201, 342
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 82, 91, 270
BstNI	CCWGG	1 cut(s)	358
BstNSI	RCATGY	1 cut(s)	51
BstSCI	CCNGG	3 cut(s)	80, 329, 356
BstSFI	CTRYAG	1 cut(s)	305
BstSLI	GKGCMC	1 cut(s)	473
BstV1I	GCAGC	1 cut(s)	51
Bsu15I	ATCGAT	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	284, 510
BsuTUI	ATCGAT	1 cut(s)	345
BtgI	CCRYGG	2 cut(s)	259, 285
BtsCI	GGATG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	40
Cac8I	GCNNGC	2 cut(s)	87, 515
Cfr13I	GGNCC	1 cut(s)	497
ClaI	ATCGAT	1 cut(s)	345
CseI	GACGC	1 cut(s)	383
CviAII	CATG	4 cut(s)	48, 179, 286, 459
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	3 cut(s)	59, 203, 344
DpnII	GATC	3 cut(s)	57, 201, 342
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
EciI	GGCGGA	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	497
EcoO109I	RGGNCCY	1 cut(s)	497
EcoRI	GAATTC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	4 cut(s)	51, 182, 289, 462
FaiI	YATR	7 cut(s)	49, 74, 143, 180, 287, 460, 519
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	4 cut(s)	47, 178, 285, 458
FauI	CCCGC	1 cut(s)	359
Fnu4HI	GCNGC	3 cut(s)	40, 68, 511
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	3 cut(s)	40, 68, 511
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	3 cut(s)	40, 68, 511
GsaI	CCCAGC	1 cut(s)	496
HaeIII	GGCC	2 cut(s)	284, 510
HapII	CCGG	4 cut(s)	26, 82, 330, 383
HgaI	GACGC	1 cut(s)	383
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	4 cut(s)	51, 182, 289, 462
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	3 cut(s)	16, 29, 184
HpaII	CCGG	4 cut(s)	26, 82, 330, 383
HphI	GGTGA	2 cut(s)	226, 469
Hpy188III	TCNNGA	5 cut(s)	199, 325, 383, 412, 445
HpyAV	CCTTC	2 cut(s)	274, 482
HpyCH4V	TGCA	2 cut(s)	76, 301
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 82, 91, 270
HpyF3I	CTNAG	1 cut(s)	336
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	4 cut(s)	51, 182, 289, 462
KflI	GGGWCCC	1 cut(s)	497
Kpn2I	TCCGGA	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	57, 201, 342
LmnI	GCTCC	2 cut(s)	64, 427
Lsp1109I	GCAGC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	371, 475
MalI	GATC	3 cut(s)	59, 203, 344
MboI	GATC	3 cut(s)	57, 201, 342
MboII	GAAGA	2 cut(s)	223, 427
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	2 cut(s)	7, 290
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	176
MroI	TCCGGA	1 cut(s)	382
MseI	TTAA	1 cut(s)	275
MspI	CCGG	4 cut(s)	26, 82, 330, 383
MspR9I	CCNGG	3 cut(s)	82, 331, 358
MvaI	CCWGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	4 cut(s)	73, 82, 91, 270
NciI	CCSGG	2 cut(s)	82, 331
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	3 cut(s)	57, 201, 342
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	4 cut(s)	51, 182, 289, 462
NlaIV	GGNNCC	7 cut(s)	24, 66, 114, 423, 470, 498, 499
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	2 cut(s)	371, 475
NspI	RCATGY	1 cut(s)	51
PciI	ACATGT	1 cut(s)	47
PfeI	GAWTC	2 cut(s)	16, 184
PflFI	GACNNNGTC	1 cut(s)	331
PflMI	CCANNNNNTGG	3 cut(s)	142, 411, 431
PkrI	GCNGC	3 cut(s)	41, 69, 512
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	497
PscI	ACATGT	1 cut(s)	47
Psp5II	RGGWCCY	1 cut(s)	497
Psp6I	CCWGG	1 cut(s)	356
PspFI	CCCAGC	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	7 cut(s)	24, 66, 114, 423, 470, 498, 499
PspPI	GGNCC	1 cut(s)	497
PspPPI	RGGWCCY	1 cut(s)	497
PsyI	GACNNNGTC	1 cut(s)	331
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	3 cut(s)	40, 68, 511
Sau3AI	GATC	3 cut(s)	57, 201, 342
Sau96I	GGNCC	1 cut(s)	497
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	3 cut(s)	82, 331, 358
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	7 cut(s)	24, 122, 213, 231, 258, 411, 486
SfcI	CTRYAG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	497
Sse9I	AATT	2 cut(s)	7, 290
SsiI	CCGC	5 cut(s)	68, 175, 237, 366, 511
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	3 cut(s)	80, 329, 356
StyI	CCWWGG	1 cut(s)	285
TaqI	TCGA	4 cut(s)	104, 294, 345, 454
TasI	AATT	2 cut(s)	7, 290
TauI	GCSGC	2 cut(s)	70, 513
TfiI	GAWTC	2 cut(s)	16, 184
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	2 cut(s)	371, 475
TseI	GCWGC	1 cut(s)	39
Tsp45I	GTSAC	2 cut(s)	371, 475
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	40
Tth111I	GACNNNGTC	1 cut(s)	331
Van91I	CCANNNNNTGG	3 cut(s)	142, 411, 431
VpaK11BI	GGWCC	1 cut(s)	497
XapI	RAATTY	1 cut(s)	290
XceI	RCATGY	1 cut(s)	51
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.