Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Reverse (-)

62074527 .. 62074778

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00328940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGATATCCATGGAATTCGATTTGCGGTTGCGGATGAAGGAGTGTGTGAAGATCGGGTCCAAGGAGATCGATAAGTTGTTGTGGAAGGAAGGCGGTGAGACACATCCCGATTATGAGTGTCTCGGGTTGGAGCTCGGGAAGATGGCTCCGTCCAATGGCCATGCCGTGTTGCTGTTTCGGGGACAGCGTGGATGCCCCATCGCCAAGCTTGAAGGTTGGGTTCCCAAACAAGGCCGTCGACATAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

83

Amino Acids

9.48

Weight (kDa)

9.33

Isoelectric Point (pI)

52.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	238
AciI	CCGC	3 cut(s)	25, 31, 93
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	14
AfiI	CCNNNNNNNGG	2 cut(s)	155, 230
AgsI	TTSAA	1 cut(s)	212
AluBI	AGCT	2 cut(s)	133, 208
AluI	AGCT	2 cut(s)	133, 208
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	2 cut(s)	92, 125
Ama87I	CYCGRG	2 cut(s)	122, 134
AoxI	GGCC	2 cut(s)	157, 232
ApoI	RAATTY	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	107
AvaI	CYCGRG	2 cut(s)	122, 134
AvaII	GGWCC	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BccI	CCATC	2 cut(s)	136, 206
BceAI	ACGGC	2 cut(s)	149, 219
BcoDI	GTCTC	2 cut(s)	92, 125
Bme18I	GGWCC	1 cut(s)	57
BmeT110I	CYCGRG	2 cut(s)	122, 134
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	3 cut(s)	58, 147, 222
BmsI	GCATC	1 cut(s)	182
Bsa29I	ATCGAT	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	9, 60
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 230
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	9, 60
BseGI	GGATG	3 cut(s)	39, 103, 197
BseLI	CCNNNNNNNGG	2 cut(s)	155, 230
BshFI	GGCC	2 cut(s)	159, 234
BshVI	ATCGAT	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	135
BsiHKCI	CYCGRG	2 cut(s)	122, 134
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	155, 230
BsmAI	GTCTC	2 cut(s)	92, 125
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	2 cut(s)	159, 234
BsoBI	CYCGRG	2 cut(s)	122, 134
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	51, 66
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	3 cut(s)	25, 31, 93
BspANI	GGCC	2 cut(s)	159, 234
BspDI	ATCGAT	1 cut(s)	69
BspLI	GGNNCC	3 cut(s)	58, 147, 222
BssECI	CCNNGG	2 cut(s)	9, 60
BssMI	GATC	2 cut(s)	51, 66
BssT1I	CCWWGG	2 cut(s)	9, 60
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	3 cut(s)	39, 103, 197
BstKTI	GATC	2 cut(s)	54, 69
BstMAI	GTCTC	2 cut(s)	92, 125
BstMBI	GATC	2 cut(s)	51, 66
Bsu15I	ATCGAT	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	159, 234
BsuTUI	ATCGAT	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	184
BtsCI	GGATG	3 cut(s)	39, 103, 197
Cfr13I	GGNCC	1 cut(s)	57
ClaI	ATCGAT	1 cut(s)	69
CviAII	CATG	2 cut(s)	10, 161
CviJI	RGCY	5 cut(s)	133, 146, 159, 208, 234
CviKI_1	RGCY	5 cut(s)	133, 146, 159, 208, 234
DpnI	GATC	2 cut(s)	53, 68
DpnII	GATC	2 cut(s)	51, 66
EaeI	YGGCCR	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	9, 60
Eco24I	GRGCYC	1 cut(s)	135
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	133
Eco88I	CYCGRG	2 cut(s)	122, 134
EcoICRI	GAGCTC	1 cut(s)	133
EcoRI	GAATTC	1 cut(s)	14
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	2 cut(s)	9, 60
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	2 cut(s)	9, 60
FaeI	CATG	2 cut(s)	13, 164
FaiI	YATR	4 cut(s)	11, 114, 162, 243
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	2 cut(s)	9, 160
FblI	GTMKAC	1 cut(s)	238
FokI	GGATG	3 cut(s)	46, 90, 204
FriOI	GRGCYC	1 cut(s)	135
HaeIII	GGCC	2 cut(s)	159, 234
Hin1II	CATG	2 cut(s)	13, 164
HincII	GTYRAC	1 cut(s)	239
HindII	GTYRAC	1 cut(s)	239
HindIII	AAGCTT	1 cut(s)	206
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188III	TCNNGA	2 cut(s)	107, 136
Hpy8I	GTNNAC	1 cut(s)	239
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	4 cut(s)	31, 79, 83, 206
Hsp92II	CATG	2 cut(s)	13, 164
Kzo9I	GATC	2 cut(s)	51, 66
LmnI	GCTCC	2 cut(s)	130, 151
LweI	GCATC	1 cut(s)	182
MalI	GATC	2 cut(s)	53, 68
MboI	GATC	2 cut(s)	51, 66
MboII	GAAGA	2 cut(s)	61, 151
MhlI	GDGCHC	1 cut(s)	135
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	1 cut(s)	14
MluNI	TGGCCA	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	108
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	159
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	2 cut(s)	51, 66
NlaIII	CATG	2 cut(s)	13, 164
NlaIV	GGNNCC	3 cut(s)	58, 147, 222
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	135
PspN4I	GGNNCC	3 cut(s)	58, 147, 222
PspPI	GGNCC	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	135
SalI	GTCGAC	1 cut(s)	237
Sau3AI	GATC	2 cut(s)	51, 66
Sau96I	GGNCC	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	3 cut(s)	135, 210, 217
SfaNI	GCATC	1 cut(s)	182
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	1 cut(s)	14
SsiI	CCGC	3 cut(s)	25, 31, 93
SstI	GAGCTC	1 cut(s)	135
StyI	CCWWGG	2 cut(s)	9, 60
TaqI	TCGA	3 cut(s)	18, 69, 238
TasI	AATT	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	50
TspGWI	ACGGA	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	1 cut(s)	14
XmiI	GTMKAC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.