Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Reverse (-)

11274869 .. 11277598

Gene Structure 2730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g15350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCACCATTTGCTACTCGCCACCACCACCACCATCATGCCCTCCTCCTCCTTCTCTGCCGCTGCCACGTCATCCTCCTCCTCCTATCCAACCCCCAAACCCAAATCCTCAAACCCTAACCCTAACTCAAACCCTAATTGCACCCTCCTCTGCAAGCACTCGCCGTCGGCCACCCTCGACCTCCTCATCCTCATCCTCGTCCTCTTCTCCGGGACCTTCCTCATCACCTCCTACTTTTCCTACATCTTCAACTCCCTCTCGCTCCTCCTCTCTCACTCCACCCTCCACCTCCACCACATTCCCGTCCCCTATGTCGTCGGCTTCGTCGCCTTCTTCGCCGCCACGCTGTTCGTAGTCGAGTTCTGCTGCGGCATTCGATCCAGGAAGTGCGATAGGCCCGGATGTAAGGGCTTGAAGAAGGCCATGGAATTCGATTTGCAATTGCAATCGGAGGAGTGTGTCAAGTCCGGGTCTAAAGATATCGATAGGCTGCCGTGGAAGGGCGGCAGCGAGGGCAATCCTGATTACGAGTGCCTCAGGACTGAGCTGAGGCGGATGGCGCCGACGAATGGCCGTGCCGTGCTTCTGTTCCGGGCGCGATGCGGATGCCCGGTGGCCAAGCTCGAAGGCTGGGGTCCCAAGAGAGGACGCCGGCATAAAAAGGCTCTGGCCAGCATGGCTCTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

25.14

Weight (kDa)

9.48

Isoelectric Point (pI)

57.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	559
AccII	CGCG	1 cut(s)	598
AciI	CCGC	6 cut(s)	60, 339, 369, 504, 553, 603
AclWI	GGATC	1 cut(s)	372
AcoI	YGGCCR	4 cut(s)	168, 571, 615, 669
AcsI	RAATTY	1 cut(s)	428
AcyI	GRCGYC	2 cut(s)	560, 649
AfiI	CCNNNNNNNGG	3 cut(s)	500, 569, 644
AgsI	TTSAA	2 cut(s)	250, 415
AjiI	CACGTC	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	380
AluBI	AGCT	2 cut(s)	547, 622
AluI	AGCT	2 cut(s)	547, 622
AlwI	GGATC	1 cut(s)	372
AoxI	GGCC	6 cut(s)	168, 395, 420, 571, 615, 669
ApeKI	GCWGC	4 cut(s)	62, 366, 490, 507
ApoI	RAATTY	1 cut(s)	428
AspLEI	GCGC	2 cut(s)	562, 598
AspS9I	GGNCC	3 cut(s)	213, 396, 635
AsuC2I	CCSGG	5 cut(s)	211, 399, 469, 593, 611
AsuHPI	GGTGA	1 cut(s)	217
AvaII	GGWCC	2 cut(s)	213, 635
AxyI	CCTNAGG	1 cut(s)	536
BalI	TGGCCA	2 cut(s)	617, 671
BanI	GGYRCC	1 cut(s)	559
BbvCI	CCTCAGC	1 cut(s)	548
BbvI	GCAGC	4 cut(s)	49, 353, 477, 519
BccI	CCATC	2 cut(s)	41, 550
BceAI	ACGGC	4 cut(s)	148, 478, 558, 563
BcgI	CGANNNNNNTGC	2 cut(s)	588, 622
BciT130I	CCWGG	1 cut(s)	382
BcnI	CCSGG	5 cut(s)	211, 399, 469, 593, 611
BfoI	RGCGCY	1 cut(s)	563
BglI	GCCNNNNNGGC	1 cut(s)	677
BisI	GCNGC	8 cut(s)	60, 63, 339, 367, 370, 491, 505, 508
BlsI	GCNGC	8 cut(s)	61, 64, 340, 368, 371, 492, 506, 509
Bme1390I	CCNGG	6 cut(s)	211, 382, 399, 469, 593, 611
Bme18I	GGWCC	2 cut(s)	213, 635
BmgBI	CACGTC	1 cut(s)	69
BmgT120I	GGNCC	3 cut(s)	213, 396, 635
BmiI	GGNNCC	4 cut(s)	214, 561, 636, 637
BmrFI	CCNGG	6 cut(s)	211, 382, 399, 469, 593, 611
BmsI	GCATC	2 cut(s)	590, 596
Bpu10I	CCTNAGC	1 cut(s)	548
BpuMI	CCSGG	5 cut(s)	211, 399, 469, 593, 611
Bsa29I	ATCGAT	1 cut(s)	483
BsaHI	GRCGYC	2 cut(s)	560, 649
BsaJI	CCNNGG	2 cut(s)	423, 494
Bsc4I	CCNNNNNNNGG	3 cut(s)	500, 569, 644
Bse118I	RCCGGY	1 cut(s)	651
Bse21I	CCTNAGG	1 cut(s)	536
BseBI	CCWGG	1 cut(s)	382
BseCI	ATCGAT	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	423, 494
BseGI	GGATG	6 cut(s)	71, 186, 192, 407, 561, 611
BseLI	CCNNNNNNNGG	3 cut(s)	500, 569, 644
BseMII	CTCAG	3 cut(s)	534, 539, 550
BseRI	GAGGAG	9 cut(s)	34, 37, 67, 70, 137, 173, 254, 257, 467
BseXI	GCAGC	4 cut(s)	49, 353, 477, 519
BseYI	CCCAGC	1 cut(s)	630
Bsh1236I	CGCG	1 cut(s)	598
BshFI	GGCC	6 cut(s)	170, 397, 422, 573, 617, 671
BshNI	GGYRCC	1 cut(s)	559
BshVI	ATCGAT	1 cut(s)	483
BsiSI	CCGG	6 cut(s)	210, 399, 468, 592, 611, 652
BslFI	GGGAC	3 cut(s)	226, 290, 621
BslI	CCNNNNNNNGG	3 cut(s)	500, 569, 644
BsmFI	GGGAC	3 cut(s)	226, 290, 621
BsmI	GAATGC	1 cut(s)	372
BsnI	GGCC	6 cut(s)	170, 397, 422, 573, 617, 671
Bsp143I	GATC	1 cut(s)	377
Bsp19I	CCATGG	1 cut(s)	423
BspACI	CCGC	6 cut(s)	60, 339, 369, 504, 553, 603
BspANI	GGCC	6 cut(s)	170, 397, 422, 573, 617, 671
BspCNI	CTCAG	3 cut(s)	535, 540, 549
BspDI	ATCGAT	1 cut(s)	483
BspFNI	CGCG	1 cut(s)	598
BspLI	GGNNCC	4 cut(s)	214, 561, 636, 637
BspPI	GGATC	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	559
BsrFI	RCCGGY	1 cut(s)	651
BssAI	RCCGGY	1 cut(s)	651
BssECI	CCNNGG	2 cut(s)	423, 494
BssMI	GATC	1 cut(s)	377
BssNI	GRCGYC	2 cut(s)	560, 649
BssT1I	CCWWGG	1 cut(s)	423
Bst2UI	CCWGG	1 cut(s)	382
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	2 cut(s)	560, 649
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstC8I	GCNNGC	3 cut(s)	155, 653, 673
BstDEI	CTNAG	3 cut(s)	536, 543, 548
BstDSI	CCRYGG	2 cut(s)	423, 494
BstF5I	GGATG	6 cut(s)	71, 186, 192, 407, 561, 611
BstFNI	CGCG	1 cut(s)	598
BstH2I	RGCGCY	1 cut(s)	563
BstHHI	GCGC	2 cut(s)	562, 598
BstKTI	GATC	1 cut(s)	380
BstMBI	GATC	1 cut(s)	377
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 335, 513, 559, 677
BstNI	CCWGG	1 cut(s)	382
BstSCI	CCNGG	6 cut(s)	209, 380, 397, 467, 591, 609
BstUI	CGCG	1 cut(s)	598
BstV1I	GCAGC	4 cut(s)	49, 353, 477, 519
Bsu15I	ATCGAT	1 cut(s)	483
Bsu36I	CCTNAGG	1 cut(s)	536
BsuRI	GGCC	6 cut(s)	170, 397, 422, 573, 617, 671
BsuTUI	ATCGAT	1 cut(s)	483
BtgI	CCRYGG	2 cut(s)	423, 494
BtgZI	GCGATG	1 cut(s)	613
BtrI	CACGTC	1 cut(s)	69
BtsCI	GGATG	6 cut(s)	71, 186, 192, 407, 561, 611
Cac8I	GCNNGC	3 cut(s)	155, 653, 673
CfoI	GCGC	2 cut(s)	562, 598
Cfr10I	RCCGGY	1 cut(s)	651
Cfr13I	GGNCC	3 cut(s)	213, 396, 635
ClaI	ATCGAT	1 cut(s)	483
CseI	GACGC	1 cut(s)	657
CviAII	CATG	3 cut(s)	37, 424, 676
DdeI	CTNAG	3 cut(s)	536, 543, 548
DinI	GGCGCC	1 cut(s)	561
DpnI	GATC	1 cut(s)	379
DpnII	GATC	1 cut(s)	377
EaeI	YGGCCR	4 cut(s)	168, 571, 615, 669
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	1 cut(s)	568
Eco130I	CCWWGG	1 cut(s)	423
Eco32I	GATATC	1 cut(s)	481
Eco47I	GGWCC	2 cut(s)	213, 635
Eco81I	CCTNAGG	1 cut(s)	536
EcoO109I	RGGNCCY	2 cut(s)	213, 635
EcoRI	GAATTC	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	380
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	423
EgeI	GGCGCC	1 cut(s)	561
EheI	GGCGCC	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	3 cut(s)	40, 427, 679
FaiI	YATR	5 cut(s)	38, 312, 425, 657, 677
FaqI	GGGAC	3 cut(s)	226, 290, 621
FatI	CATG	3 cut(s)	36, 423, 675
Fnu4HI	GCNGC	8 cut(s)	60, 63, 339, 367, 370, 491, 505, 508
FokI	GGATG	6 cut(s)	58, 173, 179, 414, 568, 618
Fsp4HI	GCNGC	8 cut(s)	60, 63, 339, 367, 370, 491, 505, 508
GlaI	GCGC	2 cut(s)	561, 597
GluI	GCNGC	8 cut(s)	60, 63, 339, 367, 370, 491, 505, 508
GsaI	CCCAGC	1 cut(s)	634
HaeII	RGCGCY	1 cut(s)	563
HaeIII	GGCC	6 cut(s)	170, 397, 422, 573, 617, 671
HapII	CCGG	6 cut(s)	210, 399, 468, 592, 611, 652
HgaI	GACGC	1 cut(s)	657
HhaI	GCGC	2 cut(s)	562, 598
Hin1I	GRCGYC	2 cut(s)	560, 649
Hin1II	CATG	3 cut(s)	40, 427, 679
Hin6I	GCGC	2 cut(s)	560, 596
HinP1I	GCGC	2 cut(s)	560, 596
HpaII	CCGG	6 cut(s)	210, 399, 468, 592, 611, 652
HphI	GGTGA	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	451
Hpy188III	TCNNGA	2 cut(s)	521, 538
Hpy99I	CGWCG	4 cut(s)	169, 320, 329, 568
HpyAV	CCTTC	6 cut(s)	61, 226, 340, 412, 493, 620
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	5 cut(s)	4, 141, 153, 439, 445
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 335, 513, 559, 677
HpyF3I	CTNAG	3 cut(s)	536, 543, 548
HpySE526I	ACGT	1 cut(s)	68
Hsp92I	GRCGYC	2 cut(s)	560, 649
Hsp92II	CATG	3 cut(s)	40, 427, 679
HspAI	GCGC	2 cut(s)	560, 596
KasI	GGCGCC	1 cut(s)	559
KflI	GGGWCCC	1 cut(s)	635
KroI	GCCGGC	1 cut(s)	651
KroNI	GCCGGC	1 cut(s)	653
Kzo9I	GATC	1 cut(s)	377
LmnI	GCTCC	1 cut(s)	267
Lsp1109I	GCAGC	4 cut(s)	49, 353, 477, 519
LweI	GCATC	2 cut(s)	590, 596
MaeII	ACGT	1 cut(s)	68
MalI	GATC	1 cut(s)	379
MboI	GATC	1 cut(s)	377
MboII	GAAGA	4 cut(s)	196, 238, 325, 427
MfeI	CAATTG	1 cut(s)	440
MlsI	TGGCCA	2 cut(s)	617, 671
MluCI	AATT	4 cut(s)	136, 428, 440, 685
MluNI	TGGCCA	2 cut(s)	617, 671
Mly113I	GGCGCC	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	113
Mox20I	TGGCCA	2 cut(s)	617, 671
MroNI	GCCGGC	1 cut(s)	651
MscI	TGGCCA	2 cut(s)	617, 671
MseI	TTAA	1 cut(s)	684
MslI	CAYNNNNRTG	1 cut(s)	35
Msp20I	TGGCCA	2 cut(s)	617, 671
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	6 cut(s)	210, 399, 468, 592, 611, 652
MspR9I	CCNGG	6 cut(s)	211, 382, 399, 469, 593, 611
MunI	CAATTG	1 cut(s)	440
Mva1269I	GAATGC	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	382
MvnI	CGCG	1 cut(s)	598
MwoI	GCNNNNNNNGC	5 cut(s)	10, 335, 513, 559, 677
NaeI	GCCGGC	1 cut(s)	653
NarI	GGCGCC	1 cut(s)	560
NciI	CCSGG	5 cut(s)	211, 399, 469, 593, 611
NcoI	CCATGG	1 cut(s)	423
NdeII	GATC	1 cut(s)	377
NgoMIV	GCCGGC	1 cut(s)	651
NlaIII	CATG	3 cut(s)	40, 427, 679
NlaIV	GGNNCC	4 cut(s)	214, 561, 636, 637
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PctI	GAATGC	1 cut(s)	372
PdiI	GCCGGC	1 cut(s)	653
PfoI	TCCNGGA	2 cut(s)	209, 380
PkrI	GCNGC	8 cut(s)	61, 64, 340, 368, 371, 492, 506, 509
PluTI	GGCGCC	1 cut(s)	563
PpuMI	RGGWCCY	2 cut(s)	213, 635
Psp5II	RGGWCCY	2 cut(s)	213, 635
Psp6I	CCWGG	1 cut(s)	380
PspFI	CCCAGC	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	380
PspN4I	GGNNCC	4 cut(s)	214, 561, 636, 637
PspPI	GGNCC	3 cut(s)	213, 396, 635
PspPPI	RGGWCCY	2 cut(s)	213, 635
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	684
SatI	GCNGC	8 cut(s)	60, 63, 339, 367, 370, 491, 505, 508
Sau3AI	GATC	1 cut(s)	377
Sau96I	GGNCC	3 cut(s)	213, 396, 635
ScrFI	CCNGG	6 cut(s)	211, 382, 399, 469, 593, 611
SetI	ASST	7 cut(s)	71, 183, 218, 230, 291, 549, 624
SfaNI	GCATC	2 cut(s)	590, 596
SfoI	GGCGCC	1 cut(s)	561
SinI	GGWCC	2 cut(s)	213, 635
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	4 cut(s)	136, 428, 440, 685
SsiI	CCGC	6 cut(s)	60, 339, 369, 504, 553, 603
SspDI	GGCGCC	1 cut(s)	559
StyD4I	CCNGG	6 cut(s)	209, 380, 397, 467, 591, 609
StyI	CCWWGG	1 cut(s)	423
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	6 cut(s)	177, 357, 376, 432, 483, 624
TasI	AATT	4 cut(s)	136, 428, 440, 685
TauI	GCSGC	4 cut(s)	62, 341, 372, 507
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TseI	GCWGC	4 cut(s)	62, 366, 490, 507
VpaK11BI	GGWCC	2 cut(s)	213, 635
XapI	RAATTY	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.