Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000103.1

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Reverse (-)

78006 .. 78248

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000103.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

atggaattcgatttgcaactacagacggaggagtgtgtcaagatcgggtctaaggagatagataagttgccctggaaaggcgggagtgacgccaatccggattacgagtgtctccaatccgagctctggaagatggctccacacaatggctttgttgtcttgatttttcgagcatggtgtgggtgccccgtcaccaagcttgaaggctggggtcccaagcgaggccaccggcataagaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

80

Amino Acids

9.2

Weight (kDa)

7.69

Isoelectric Point (pI)

73.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	183
AccB7I	CCANNNNNTGG	1 cut(s)	146
AccIII	TCCGGA	1 cut(s)	97
AciI	CCGC	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	90
AfiI	CCNNNNNNNGG	4 cut(s)	77, 126, 146, 221
AgsI	TTSAA	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	2 cut(s)	124, 199
AluI	AGCT	2 cut(s)	124, 199
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	97
AoxI	GGCC	1 cut(s)	223
ApoI	RAATTY	1 cut(s)	5
AspS9I	GGNCC	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	126
BccI	CCATC	1 cut(s)	127
BciT130I	CCWGG	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	4 cut(s)	138, 185, 213, 214
BmrFI	CCNGG	1 cut(s)	73
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 126, 146, 221
Bse118I	RCCGGY	1 cut(s)	228
BseAI	TCCGGA	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	71
BseLI	CCNNNNNNNGG	4 cut(s)	77, 126, 146, 221
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	188
BseYI	CCCAGC	1 cut(s)	207
BshFI	GGCC	1 cut(s)	225
BshNI	GGYRCC	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	98, 229
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	4 cut(s)	77, 126, 146, 221
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	225
Bsp1286I	GDGCHC	2 cut(s)	126, 188
Bsp13I	TCCGGA	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	1 cut(s)	225
BspEI	TCCGGA	1 cut(s)	97
BspLI	GGNNCC	4 cut(s)	138, 185, 213, 214
BspT107I	GGYRCC	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	228
BssAI	RCCGGY	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	1 cut(s)	42
BssNI	GRCGYC	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	73
BstACI	GRCGYC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	1 cut(s)	42
BstNI	CCWGG	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	71
BstSFI	CTRYAG	1 cut(s)	20
BstSLI	GKGCMC	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	212
CseI	GACGC	1 cut(s)	98
CviAII	CATG	1 cut(s)	174
CviJI	RGCY	6 cut(s)	124, 137, 150, 199, 207, 225
CviKI_1	RGCY	6 cut(s)	124, 137, 150, 199, 207, 225
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Ecl136II	GAGCTC	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	126
FaeI	CATG	1 cut(s)	177
FaiI	YATR	2 cut(s)	175, 234
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	1 cut(s)	173
FauI	CCCGC	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	126
GsaI	CCCAGC	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	2 cut(s)	98, 229
HgaI	GACGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	197
HpaII	CCGG	2 cut(s)	98, 229
HphI	GGTGA	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	4 cut(s)	40, 98, 127, 160
HpyAV	CCTTC	1 cut(s)	197
HpyCH4V	TGCA	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	51
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	177
KflI	GGGWCCC	1 cut(s)	212
Kpn2I	TCCGGA	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	5 cut(s)	58, 85, 111, 112, 193
MaeIII	GTNAC	2 cut(s)	86, 190
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	1 cut(s)	142
MhlI	GDGCHC	2 cut(s)	126, 188
MluCI	AATT	1 cut(s)	5
MnlI	CCTC	2 cut(s)	22, 215
MroI	TCCGGA	1 cut(s)	97
MspI	CCGG	2 cut(s)	98, 229
MspR9I	CCNGG	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	73
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	1 cut(s)	177
NlaIV	GGNNCC	4 cut(s)	138, 185, 213, 214
NmuCI	GTSAC	2 cut(s)	86, 190
PflMI	CCANNNNNTGG	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	71
PspN4I	GGNNCC	4 cut(s)	138, 185, 213, 214
PspPI	GGNCC	1 cut(s)	212
PspPPI	RGGWCCY	1 cut(s)	212
SacI	GAGCTC	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	2 cut(s)	126, 188
SetI	ASST	2 cut(s)	126, 201
SfcI	CTRYAG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	212
Sse9I	AATT	1 cut(s)	5
SsiI	CCGC	1 cut(s)	81
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	71
TaqI	TCGA	2 cut(s)	9, 169
TasI	AATT	1 cut(s)	5
TseFI	GTSAC	2 cut(s)	86, 190
Tsp45I	GTSAC	2 cut(s)	86, 190
TspGWI	ACGGA	1 cut(s)	41
Van91I	CCANNNNNTGG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	212
XapI	RAATTY	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.