Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Forward (+)

42439018 .. 42439713

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00361720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCGCGTGACGCGCCCTCCTCCCCTATTCGCCACCACCATCATGCGCTCTTCCTCAGGCTCCTCCTCCTCCTCCTCCTCCTTCACCGCCACGTCATCCTCCTCTCCGTCCCCGAAACCCAAATCCTCAAACCCTAACCACCACTCCAATGGCGGCAGCAACCCGAATTGCACGCTCCTCTGCAAGCATTCGCCGTCGGCGACCCTCGACCTCCTAATCCTCATCCTCGTCCTCTTCTCCGGCACCTTCCTCATCACCTCCTACTTCTCCTACATCTTCAACTCCCTCTCCCTCCTCCTCTCCCACTCCGCCCCGCACCTCCAGTTCCTCCCGATCCCCTACCTCCTCGGCTTCCTCTTCTTCTTCGTCGCCGCCCTCCTCTTCGTCGAGTTCTGCTGCGGCGCCCGATCGCGCAAGTGCGACCGCCACGGCTGCAAGGGCTTGAAGAAGGCCATGGAATTCGATTTGCAGCTGCAGACGGAGGAGTGTGTCAAGACCGGGTCTAAGGAGATCGATAAGTTGCCCTGGAAGGGCGGGAGTGACACCAATCCCGATTACGAGTGTCTCCGGTCCGAGCTCCGGAAGATGGCTCCGCACAATGGCCGTGCCGTCCTGCTCTTCCGGGCACGGTGTGGGTGCCCCGTCGCCAAACTTGAAGGCTGGGGTCCCAAGCGAGGCCGCCGGCATAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

25.49

Weight (kDa)

9.72

Isoelectric Point (pI)

59.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	242, 401, 636
AccII	CGCG	3 cut(s)	6, 13, 412
AccIII	TCCGGA	1 cut(s)	579
AclWI	GGATC	1 cut(s)	328
AcoI	YGGCCR	1 cut(s)	601
AcsI	RAATTY	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	402
AdeI	CACNNNGTG	1 cut(s)	632
AfiI	CCNNNNNNNGG	5 cut(s)	530, 579, 586, 599, 674
AgsI	TTSAA	3 cut(s)	280, 445, 656
AjiI	CACGTC	1 cut(s)	93
AjnI	CCWGG	1 cut(s)	524
AluBI	AGCT	2 cut(s)	472, 577
AluI	AGCT	2 cut(s)	472, 577
Alw21I	GWGCWC	1 cut(s)	579
Alw26I	GTCTC	1 cut(s)	569
AlwI	GGATC	1 cut(s)	328
Aor13HI	TCCGGA	1 cut(s)	579
AoxI	GGCC	3 cut(s)	450, 601, 676
ApeKI	GCWGC	5 cut(s)	156, 396, 432, 469, 472
ApoI	RAATTY	1 cut(s)	458
AspLEI	GCGC	5 cut(s)	6, 15, 48, 404, 414
AspS9I	GGNCC	2 cut(s)	570, 665
AsuC2I	CCSGG	2 cut(s)	499, 623
AsuHPI	GGTGA	2 cut(s)	76, 247
AvaII	GGWCC	2 cut(s)	570, 665
AxyI	CCTNAGG	1 cut(s)	55
BaeGI	GKGCMC	2 cut(s)	628, 641
BanI	GGYRCC	3 cut(s)	242, 401, 636
BanII	GRGCYC	1 cut(s)	579
Bbv12I	GWGCWC	1 cut(s)	579
BbvI	GCAGC	5 cut(s)	168, 383, 419, 459, 481
BccI	CCATC	2 cut(s)	47, 580
BceAI	ACGGC	4 cut(s)	178, 445, 588, 593
BciT130I	CCWGG	1 cut(s)	526
BcnI	CCSGG	2 cut(s)	499, 623
BcoDI	GTCTC	1 cut(s)	569
BfmI	CTRYAG	1 cut(s)	473
BfoI	RGCGCY	1 cut(s)	405
BisI	GCNGC	9 cut(s)	154, 157, 372, 397, 400, 433, 470, 473, 679
BlsI	GCNGC	9 cut(s)	155, 158, 373, 398, 401, 434, 471, 474, 680
Bme1390I	CCNGG	3 cut(s)	499, 526, 623
Bme18I	GGWCC	2 cut(s)	570, 665
BmgBI	CACGTC	1 cut(s)	93
BmgT120I	GGNCC	2 cut(s)	570, 665
BmiI	GGNNCC	7 cut(s)	61, 244, 403, 591, 638, 666, 667
BmrFI	CCNGG	3 cut(s)	499, 526, 623
BpmI	CTGGAG	1 cut(s)	305
BpuMI	CCSGG	2 cut(s)	499, 623
Bsa29I	ATCGAT	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	4 cut(s)	346, 427, 453, 524
BsaWI	WCCGGW	2 cut(s)	567, 579
BsaXI	ACNNNNNCTCC	5 cut(s)	31, 128, 158, 272, 302
Bsc4I	CCNNNNNNNGG	5 cut(s)	530, 579, 586, 599, 674
Bse118I	RCCGGY	1 cut(s)	681
Bse1I	ACTGG	1 cut(s)	322
Bse21I	CCTNAGG	1 cut(s)	55
BseAI	TCCGGA	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	526
BseCI	ATCGAT	1 cut(s)	513
BseDI	CCNNGG	4 cut(s)	346, 427, 453, 524
BseGI	GGATG	2 cut(s)	95, 222
BseLI	CCNNNNNNNGG	5 cut(s)	530, 579, 586, 599, 674
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	322
BseSI	GKGCMC	2 cut(s)	628, 641
BseXI	GCAGC	5 cut(s)	168, 383, 419, 459, 481
BseYI	CCCAGC	1 cut(s)	660
Bsh1236I	CGCG	3 cut(s)	6, 13, 412
Bsh1285I	CGRYCG	2 cut(s)	410, 424
BshFI	GGCC	3 cut(s)	452, 603, 678
BshNI	GGYRCC	3 cut(s)	242, 401, 636
BshVI	ATCGAT	1 cut(s)	513
BsiEI	CGRYCG	2 cut(s)	410, 424
BsiHKAI	GWGCWC	1 cut(s)	579
BsiSI	CCGG	6 cut(s)	240, 498, 568, 580, 622, 682
BslFI	GGGAC	2 cut(s)	94, 651
BslI	CCNNNNNNNGG	5 cut(s)	530, 579, 586, 599, 674
BsmAI	GTCTC	1 cut(s)	569
BsmFI	GGGAC	2 cut(s)	94, 651
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	3 cut(s)	452, 603, 678
Bsp1286I	GDGCHC	3 cut(s)	579, 628, 641
Bsp13I	TCCGGA	1 cut(s)	579
Bsp143I	GATC	3 cut(s)	333, 407, 510
Bsp19I	CCATGG	1 cut(s)	453
BspANI	GGCC	3 cut(s)	452, 603, 678
BspCNI	CTCAG	1 cut(s)	68
BspDI	ATCGAT	1 cut(s)	513
BspEI	TCCGGA	1 cut(s)	579
BspFNI	CGCG	3 cut(s)	6, 13, 412
BspLI	GGNNCC	7 cut(s)	61, 244, 403, 591, 638, 666, 667
BspMAI	CTGCAG	1 cut(s)	477
BspPI	GGATC	1 cut(s)	328
BspQI	GCTCTTC	2 cut(s)	55, 623
BspT107I	GGYRCC	3 cut(s)	242, 401, 636
BsrFI	RCCGGY	1 cut(s)	681
BsrI	ACTGG	1 cut(s)	322
BssAI	RCCGGY	1 cut(s)	681
BssECI	CCNNGG	4 cut(s)	346, 427, 453, 524
BssMI	GATC	3 cut(s)	333, 407, 510
BssNI	GRCGYC	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	526
Bst4CI	ACNGT	1 cut(s)	630
Bst6I	CTCTTC	5 cut(s)	55, 239, 362, 386, 623
BstACI	GRCGYC	1 cut(s)	402
BstC8I	GCNNGC	3 cut(s)	173, 185, 683
BstDEI	CTNAG	2 cut(s)	55, 504
BstDSI	CCRYGG	2 cut(s)	427, 453
BstF5I	GGATG	2 cut(s)	95, 222
BstFNI	CGCG	3 cut(s)	6, 13, 412
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	5 cut(s)	6, 15, 48, 404, 414
BstKTI	GATC	3 cut(s)	336, 410, 513
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	3 cut(s)	333, 407, 510
BstMCI	CGRYCG	2 cut(s)	410, 424
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 12, 432, 438
BstNI	CCWGG	1 cut(s)	526
BstSCI	CCNGG	3 cut(s)	497, 524, 621
BstSFI	CTRYAG	1 cut(s)	473
BstSLI	GKGCMC	2 cut(s)	628, 641
BstUI	CGCG	3 cut(s)	6, 13, 412
BstV1I	GCAGC	5 cut(s)	168, 383, 419, 459, 481
BstXI	CCANNNNNNTGG	1 cut(s)	149
Bsu15I	ATCGAT	1 cut(s)	513
Bsu36I	CCTNAGG	1 cut(s)	55
BsuRI	GGCC	3 cut(s)	452, 603, 678
BsuTUI	ATCGAT	1 cut(s)	513
BtgI	CCRYGG	2 cut(s)	427, 453
BtrI	CACGTC	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	95, 222
Cac8I	GCNNGC	3 cut(s)	173, 185, 683
CfoI	GCGC	5 cut(s)	6, 15, 48, 404, 414
Cfr10I	RCCGGY	1 cut(s)	681
Cfr13I	GGNCC	2 cut(s)	570, 665
ClaI	ATCGAT	1 cut(s)	513
CpoI	CGGWCCG	1 cut(s)	570
CseI	GACGC	1 cut(s)	19
CspI	CGGWCCG	1 cut(s)	570
CviAII	CATG	2 cut(s)	43, 454
DdeI	CTNAG	2 cut(s)	55, 504
DinI	GGCGCC	1 cut(s)	403
DpnI	GATC	3 cut(s)	335, 409, 512
DpnII	GATC	3 cut(s)	333, 407, 510
DraIII	CACNNNGTG	1 cut(s)	632
EaeI	YGGCCR	1 cut(s)	601
Eam1104I	CTCTTC	5 cut(s)	55, 239, 362, 386, 623
EarI	CTCTTC	5 cut(s)	55, 239, 362, 386, 623
EciI	GGCGGA	1 cut(s)	298
Ecl136II	GAGCTC	1 cut(s)	577
Eco130I	CCWWGG	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	579
Eco47I	GGWCC	2 cut(s)	570, 665
Eco53kI	GAGCTC	1 cut(s)	577
Eco81I	CCTNAGG	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	577
EcoO109I	RGGNCCY	1 cut(s)	665
EcoRI	GAATTC	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	524
EcoT14I	CCWWGG	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	579
EgeI	GGCGCC	1 cut(s)	403
EheI	GGCGCC	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	2 cut(s)	46, 457
FaiI	YATR	3 cut(s)	44, 455, 687
FaqI	GGGAC	2 cut(s)	94, 651
FatI	CATG	2 cut(s)	42, 453
FauI	CCCGC	2 cut(s)	321, 527
Fnu4HI	GCNGC	9 cut(s)	154, 157, 372, 397, 400, 433, 470, 473, 679
FokI	GGATG	2 cut(s)	82, 209
FriOI	GRGCYC	1 cut(s)	579
Fsp4HI	GCNGC	9 cut(s)	154, 157, 372, 397, 400, 433, 470, 473, 679
GlaI	GCGC	5 cut(s)	5, 14, 47, 403, 413
GluI	GCNGC	9 cut(s)	154, 157, 372, 397, 400, 433, 470, 473, 679
GsaI	CCCAGC	1 cut(s)	664
GsuI	CTGGAG	1 cut(s)	305
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	3 cut(s)	452, 603, 678
HapII	CCGG	6 cut(s)	240, 498, 568, 580, 622, 682
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	5 cut(s)	6, 15, 48, 404, 414
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	2 cut(s)	46, 457
Hin6I	GCGC	5 cut(s)	4, 13, 46, 402, 412
HinP1I	GCGC	5 cut(s)	4, 13, 46, 402, 412
HpaII	CCGG	6 cut(s)	240, 498, 568, 580, 622, 682
HphI	GGTGA	2 cut(s)	76, 247
Hpy188I	TCNGA	1 cut(s)	574
Hpy188III	TCNNGA	4 cut(s)	331, 493, 551, 580
Hpy99I	CGWCG	4 cut(s)	199, 371, 389, 647
HpyAV	CCTTC	5 cut(s)	91, 256, 442, 523, 650
HpyCH4III	ACNGT	1 cut(s)	630
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	5 cut(s)	171, 183, 435, 469, 475
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 12, 432, 438
HpyF3I	CTNAG	2 cut(s)	55, 504
HpySE526I	ACGT	1 cut(s)	92
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	46, 457
HspAI	GCGC	5 cut(s)	4, 13, 46, 402, 412
KasI	GGCGCC	1 cut(s)	401
KflI	GGGWCCC	1 cut(s)	665
Kpn2I	TCCGGA	1 cut(s)	579
KroI	GCCGGC	1 cut(s)	681
KroNI	GCCGGC	1 cut(s)	683
Kzo9I	GATC	3 cut(s)	333, 407, 510
LguI	GCTCTTC	2 cut(s)	55, 623
LmnI	GCTCC	4 cut(s)	65, 180, 582, 595
Lsp1109I	GCAGC	5 cut(s)	168, 383, 419, 459, 481
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	2 cut(s)	7, 539
MalI	GATC	3 cut(s)	335, 409, 512
MboI	GATC	3 cut(s)	333, 407, 510
MhlI	GDGCHC	3 cut(s)	579, 628, 641
MluCI	AATT	2 cut(s)	166, 458
Mly113I	GGCGCC	1 cut(s)	402
MroI	TCCGGA	1 cut(s)	579
MroNI	GCCGGC	1 cut(s)	681
MslI	CAYNNNNRTG	2 cut(s)	41, 147
MspA1I	CMGCKG	1 cut(s)	472
MspI	CCGG	6 cut(s)	240, 498, 568, 580, 622, 682
MspR9I	CCNGG	3 cut(s)	499, 526, 623
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	526
MvnI	CGCG	3 cut(s)	6, 13, 412
MwoI	GCNNNNNNNGC	4 cut(s)	10, 12, 432, 438
NaeI	GCCGGC	1 cut(s)	683
NarI	GGCGCC	1 cut(s)	402
NciI	CCSGG	2 cut(s)	499, 623
NcoI	CCATGG	1 cut(s)	453
NdeII	GATC	3 cut(s)	333, 407, 510
NgoMIV	GCCGGC	1 cut(s)	681
NlaIII	CATG	2 cut(s)	46, 457
NlaIV	GGNNCC	7 cut(s)	61, 244, 403, 591, 638, 666, 667
NmeAIII	GCCGAG	1 cut(s)	327
NmuCI	GTSAC	2 cut(s)	7, 539
PciSI	GCTCTTC	2 cut(s)	55, 623
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PctI	GAATGC	1 cut(s)	187
PdiI	GCCGGC	1 cut(s)	683
PflFI	GACNNNGTC	1 cut(s)	499
PkrI	GCNGC	9 cut(s)	155, 158, 373, 398, 401, 434, 471, 474, 680
Ple19I	CGATCG	1 cut(s)	410
PluTI	GGCGCC	1 cut(s)	405
PpuMI	RGGWCCY	1 cut(s)	665
Psp124BI	GAGCTC	1 cut(s)	579
Psp5II	RGGWCCY	1 cut(s)	665
Psp6I	CCWGG	1 cut(s)	524
PspFI	CCCAGC	1 cut(s)	660
PspGI	CCWGG	1 cut(s)	524
PspN4I	GGNNCC	7 cut(s)	61, 244, 403, 591, 638, 666, 667
PspPI	GGNCC	2 cut(s)	570, 665
PspPPI	RGGWCCY	1 cut(s)	665
PstI	CTGCAG	1 cut(s)	477
PsyI	GACNNNGTC	1 cut(s)	499
PvuI	CGATCG	1 cut(s)	410
PvuII	CAGCTG	1 cut(s)	472
RseI	CAYNNNNRTG	2 cut(s)	41, 147
Rsr2I	CGGWCCG	1 cut(s)	570
RsrII	CGGWCCG	1 cut(s)	570
SacI	GAGCTC	1 cut(s)	579
SapI	GCTCTTC	2 cut(s)	55, 623
SatI	GCNGC	9 cut(s)	154, 157, 372, 397, 400, 433, 470, 473, 679
Sau3AI	GATC	3 cut(s)	333, 407, 510
Sau96I	GGNCC	2 cut(s)	570, 665
ScrFI	CCNGG	3 cut(s)	499, 526, 623
SduI	GDGCHC	3 cut(s)	579, 628, 641
SetI	ASST	8 cut(s)	95, 213, 248, 260, 321, 345, 474, 579
SfcI	CTRYAG	1 cut(s)	473
SfoI	GGCGCC	1 cut(s)	403
SinI	GGWCC	2 cut(s)	570, 665
SmiMI	CAYNNNNRTG	2 cut(s)	41, 147
Sse9I	AATT	2 cut(s)	166, 458
SspDI	GGCGCC	1 cut(s)	401
SstI	GAGCTC	1 cut(s)	579
StyD4I	CCNGG	3 cut(s)	497, 524, 621
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	630
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	4 cut(s)	207, 387, 462, 513
TasI	AATT	2 cut(s)	166, 458
TauI	GCSGC	4 cut(s)	156, 374, 402, 681
TseFI	GTSAC	2 cut(s)	7, 539
TseI	GCWGC	5 cut(s)	156, 396, 432, 469, 472
Tsp45I	GTSAC	2 cut(s)	7, 539
TspGWI	ACGGA	2 cut(s)	96, 494
Tth111I	GACNNNGTC	1 cut(s)	499
VpaK11BI	GGWCC	2 cut(s)	570, 665
XapI	RAATTY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.