Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Reverse (-)

11788394 .. 11791997

Gene Structure 3604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G150300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCGCCATATGCTATTCGCCACCATCACCACCACCATGCCCTCCTCAGCCGCCGCCACGTCATCGTCCTCCCCAACCCCCAAACCCAAATCCTCAAACCCTAACCCTAACGGAAACCCTAATTGCACCCTCCTCTGCAAGCACTCGCCTTCTGCAACCCTCGACCTCCTAATCCTCATCCTCGTCCTCTTCTCCGGGACCTTCCTCATCACCTCCTACTTCTCCTACATCTTCAATTCCCTCTCTCTCCTCCTCTCCCACTCTAGCATTCACCTCCACCACATTCCGGTCCCTTATGTCGTCGGCTTCGTCGCTTTTTTTGCCGTCGCGCTGTTCATAGTCGAATTTTGCTGTGGCACTAGATCGAGAAAGTGCGACAGGCCTGGGTGCAAGGGTTTGAAAAAAGCCATGGAATTCGATTTGCAATTGCAGACCGAGGAGTGTGTGAAGACCGGGTCAAAAGATATCGATAAGCTGCCGTGGAAGGGCGGGAGCGAGGGCAATCCCGATTACGAGTGTCTCAGGTCTGAGCTGAGGAAGATGGCGCCCCCCAATGGCCGCGCCGTTCTGCTGTTTCGGGCGCGATGCGGGTGCCCCGTGGCCAAGCTCGAAGGTTGGGGTCCCAAGCGAGGACGCCGGCATAAGAAGGCTCTTGCCAGTATGGTTCCTAATGGAGGAGACAATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

25.06

Weight (kDa)

9.54

Isoelectric Point (pI)

54.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	544, 591
AccII	CGCG	3 cut(s)	329, 561, 583
AciI	CCGC	5 cut(s)	51, 54, 489, 559, 588
AcoI	YGGCCR	2 cut(s)	556, 600
AcsI	RAATTY	2 cut(s)	344, 413
AcyI	GRCGYC	2 cut(s)	545, 634
AfiI	CCNNNNNNNGG	5 cut(s)	286, 485, 554, 629, 674
AgsI	TTSAA	2 cut(s)	235, 400
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	3 cut(s)	475, 532, 607
AluI	AGCT	3 cut(s)	475, 532, 607
Alw26I	GTCTC	2 cut(s)	524, 672
AoxI	GGCC	3 cut(s)	380, 556, 600
ApeKI	GCWGC	1 cut(s)	475
ApoI	RAATTY	2 cut(s)	344, 413
AspLEI	GCGC	5 cut(s)	6, 331, 547, 563, 583
AspS9I	GGNCC	3 cut(s)	198, 289, 620
AsuC2I	CCSGG	2 cut(s)	196, 454
AsuHPI	GGTGA	3 cut(s)	19, 202, 263
AvaII	GGWCC	3 cut(s)	198, 289, 620
BaeGI	GKGCMC	1 cut(s)	596
BalI	TGGCCA	1 cut(s)	602
BanI	GGYRCC	2 cut(s)	544, 591
BbsI	GAAGAC	1 cut(s)	455
BbvCI	CCTCAGC	2 cut(s)	46, 533
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	2 cut(s)	32, 535
BceAI	ACGGC	3 cut(s)	308, 463, 548
BcgI	CGANNNNNNTGC	2 cut(s)	573, 607
BciT130I	CCWGG	1 cut(s)	384
BcnI	CCSGG	2 cut(s)	196, 454
BcoDI	GTCTC	2 cut(s)	524, 672
BfaI	CTAG	2 cut(s)	264, 360
BfoI	RGCGCY	1 cut(s)	548
BisI	GCNGC	4 cut(s)	51, 54, 476, 559
BlsI	GCNGC	4 cut(s)	52, 55, 477, 560
Bme1390I	CCNGG	3 cut(s)	196, 384, 454
Bme18I	GGWCC	3 cut(s)	198, 289, 620
BmgBI	CACGTC	1 cut(s)	60
BmgT120I	GGNCC	3 cut(s)	198, 289, 620
BmiI	GGNNCC	7 cut(s)	199, 291, 546, 593, 621, 622, 666
BmrFI	CCNGG	3 cut(s)	196, 384, 454
BmsI	GCATC	1 cut(s)	575
BpiI	GAAGAC	1 cut(s)	455
Bpu10I	CCTNAGC	2 cut(s)	46, 533
BpuMI	CCSGG	2 cut(s)	196, 454
Bsa29I	ATCGAT	1 cut(s)	468
BsaHI	GRCGYC	2 cut(s)	545, 634
BsaJI	CCNNGG	5 cut(s)	383, 408, 435, 479, 597
BsaWI	WCCGGW	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	5 cut(s)	286, 485, 554, 629, 674
Bse118I	RCCGGY	1 cut(s)	636
Bse1I	ACTGG	1 cut(s)	657
BseBI	CCWGG	1 cut(s)	384
BseCI	ATCGAT	1 cut(s)	468
BseDI	CCNNGG	5 cut(s)	383, 408, 435, 479, 597
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	5 cut(s)	286, 485, 554, 629, 674
BseMII	CTCAG	4 cut(s)	60, 519, 524, 535
BseNI	ACTGG	1 cut(s)	657
BseRI	GAGGAG	6 cut(s)	34, 122, 239, 242, 452, 690
BseSI	GKGCMC	1 cut(s)	596
BseXI	GCAGC	1 cut(s)	462
Bsh1236I	CGCG	3 cut(s)	329, 561, 583
BshFI	GGCC	3 cut(s)	382, 558, 602
BshNI	GGYRCC	2 cut(s)	544, 591
BshVI	ATCGAT	1 cut(s)	468
BsiSI	CCGG	4 cut(s)	195, 287, 453, 637
BslFI	GGGAC	3 cut(s)	211, 275, 606
BslI	CCNNNNNNNGG	5 cut(s)	286, 485, 554, 629, 674
BsmAI	GTCTC	2 cut(s)	524, 672
BsmFI	GGGAC	3 cut(s)	211, 275, 606
BsmI	GAATGC	1 cut(s)	267
BsnI	GGCC	3 cut(s)	382, 558, 602
Bsp1286I	GDGCHC	1 cut(s)	596
Bsp143I	GATC	1 cut(s)	362
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	5 cut(s)	51, 54, 489, 559, 588
BspANI	GGCC	3 cut(s)	382, 558, 602
BspCNI	CTCAG	4 cut(s)	59, 520, 525, 534
BspDI	ATCGAT	1 cut(s)	468
BspFNI	CGCG	3 cut(s)	329, 561, 583
BspLI	GGNNCC	7 cut(s)	199, 291, 546, 593, 621, 622, 666
BspT107I	GGYRCC	2 cut(s)	544, 591
BsrFI	RCCGGY	1 cut(s)	636
BsrI	ACTGG	1 cut(s)	657
BssAI	RCCGGY	1 cut(s)	636
BssECI	CCNNGG	5 cut(s)	383, 408, 435, 479, 597
BssMI	GATC	1 cut(s)	362
BssNI	GRCGYC	2 cut(s)	545, 634
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	384
Bst6I	CTCTTC	1 cut(s)	194
BstACI	GRCGYC	2 cut(s)	545, 634
BstC8I	GCNNGC	2 cut(s)	140, 638
BstDEI	CTNAG	4 cut(s)	46, 521, 528, 533
BstDSI	CCRYGG	3 cut(s)	408, 479, 597
BstENI	CCTNNNNNAGG	1 cut(s)	672
BstF5I	GGATG	1 cut(s)	177
BstFNI	CGCG	3 cut(s)	329, 561, 583
BstH2I	RGCGCY	1 cut(s)	548
BstHHI	GCGC	5 cut(s)	6, 331, 547, 563, 583
BstKTI	GATC	1 cut(s)	365
BstMAI	GTCTC	2 cut(s)	524, 672
BstMBI	GATC	1 cut(s)	362
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 320
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	3 cut(s)	194, 382, 452
BstSLI	GKGCMC	1 cut(s)	596
BstUI	CGCG	3 cut(s)	329, 561, 583
BstV1I	GCAGC	1 cut(s)	462
BstV2I	GAAGAC	1 cut(s)	455
Bsu15I	ATCGAT	1 cut(s)	468
BsuRI	GGCC	3 cut(s)	382, 558, 602
BsuTUI	ATCGAT	1 cut(s)	468
BtgI	CCRYGG	3 cut(s)	408, 479, 597
BtgZI	GCGATG	1 cut(s)	598
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	140, 638
CfoI	GCGC	5 cut(s)	6, 331, 547, 563, 583
Cfr10I	RCCGGY	1 cut(s)	636
Cfr13I	GGNCC	3 cut(s)	198, 289, 620
ClaI	ATCGAT	1 cut(s)	468
CseI	GACGC	1 cut(s)	642
CviAII	CATG	2 cut(s)	37, 409
DdeI	CTNAG	4 cut(s)	46, 521, 528, 533
DinI	GGCGCC	1 cut(s)	546
DpnI	GATC	1 cut(s)	364
DpnII	GATC	1 cut(s)	362
EaeI	YGGCCR	2 cut(s)	556, 600
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	408
Eco147I	AGGCCT	1 cut(s)	382
Eco32I	GATATC	1 cut(s)	466
Eco47I	GGWCC	3 cut(s)	198, 289, 620
EcoNI	CCTNNNNNAGG	1 cut(s)	672
EcoO109I	RGGNCCY	2 cut(s)	198, 620
EcoRI	GAATTC	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	382
EcoRV	GATATC	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	408
EgeI	GGCGCC	1 cut(s)	546
EheI	GGCGCC	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	2 cut(s)	40, 412
FaiI	YATR	8 cut(s)	9, 11, 38, 297, 338, 410, 642, 662
FaqI	GGGAC	3 cut(s)	211, 275, 606
FatI	CATG	2 cut(s)	36, 408
FauI	CCCGC	2 cut(s)	482, 581
FauNDI	CATATG	1 cut(s)	9
Fnu4HI	GCNGC	4 cut(s)	51, 54, 476, 559
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	4 cut(s)	51, 54, 476, 559
FspBI	CTAG	2 cut(s)	264, 360
GlaI	GCGC	5 cut(s)	5, 330, 546, 562, 582
GluI	GCNGC	4 cut(s)	51, 54, 476, 559
HaeII	RGCGCY	1 cut(s)	548
HaeIII	GGCC	3 cut(s)	382, 558, 602
HapII	CCGG	4 cut(s)	195, 287, 453, 637
HgaI	GACGC	1 cut(s)	642
HhaI	GCGC	5 cut(s)	6, 331, 547, 563, 583
Hin1I	GRCGYC	2 cut(s)	545, 634
Hin1II	CATG	2 cut(s)	40, 412
Hin6I	GCGC	5 cut(s)	4, 329, 545, 561, 581
HinP1I	GCGC	5 cut(s)	4, 329, 545, 561, 581
HpaII	CCGG	4 cut(s)	195, 287, 453, 637
HphI	GGTGA	3 cut(s)	19, 202, 263
Hpy188I	TCNGA	1 cut(s)	529
Hpy188III	TCNNGA	2 cut(s)	366, 506
Hpy99I	CGWCG	3 cut(s)	305, 314, 329
HpyAV	CCTTC	5 cut(s)	159, 211, 478, 605, 640
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	6 cut(s)	126, 138, 155, 390, 424, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 320
HpyF3I	CTNAG	4 cut(s)	46, 521, 528, 533
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	2 cut(s)	545, 634
Hsp92II	CATG	2 cut(s)	40, 412
HspAI	GCGC	5 cut(s)	4, 329, 545, 561, 581
KasI	GGCGCC	1 cut(s)	544
KflI	GGGWCCC	1 cut(s)	620
KroI	GCCGGC	1 cut(s)	636
KroNI	GCCGGC	1 cut(s)	638
Kzo9I	GATC	1 cut(s)	362
LmnI	GCTCC	1 cut(s)	492
LpnPI	CCDG	9 cut(s)	208, 300, 364, 369, 396, 466, 508, 650, 670
Lsp1109I	GCAGC	1 cut(s)	462
LweI	GCATC	1 cut(s)	575
MaeI	CTAG	2 cut(s)	264, 360
MaeII	ACGT	1 cut(s)	59
MalI	GATC	1 cut(s)	364
MboI	GATC	1 cut(s)	362
MboII	GAAGA	4 cut(s)	181, 223, 460, 550
MfeI	CAATTG	1 cut(s)	425
MhlI	GDGCHC	1 cut(s)	596
MlsI	TGGCCA	1 cut(s)	602
MluCI	AATT	5 cut(s)	121, 235, 344, 413, 425
MluNI	TGGCCA	1 cut(s)	602
Mly113I	GGCGCC	1 cut(s)	545
Mox20I	TGGCCA	1 cut(s)	602
MroNI	GCCGGC	1 cut(s)	636
MscI	TGGCCA	1 cut(s)	602
MslI	CAYNNNNRTG	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	602
MspI	CCGG	4 cut(s)	195, 287, 453, 637
MspR9I	CCNGG	3 cut(s)	196, 384, 454
MunI	CAATTG	1 cut(s)	425
Mva1269I	GAATGC	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	3 cut(s)	329, 561, 583
MwoI	GCNNNNNNNGC	2 cut(s)	10, 320
NaeI	GCCGGC	1 cut(s)	638
NarI	GGCGCC	1 cut(s)	545
NciI	CCSGG	2 cut(s)	196, 454
NcoI	CCATGG	1 cut(s)	408
NdeI	CATATG	1 cut(s)	9
NdeII	GATC	1 cut(s)	362
NgoMIV	GCCGGC	1 cut(s)	636
NlaIII	CATG	2 cut(s)	40, 412
NlaIV	GGNNCC	7 cut(s)	199, 291, 546, 593, 621, 622, 666
PceI	AGGCCT	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PctI	GAATGC	1 cut(s)	267
PdiI	GCCGGC	1 cut(s)	638
PflFI	GACNNNGTC	1 cut(s)	454
PfoI	TCCNGGA	1 cut(s)	194
PkrI	GCNGC	4 cut(s)	52, 55, 477, 560
PluTI	GGCGCC	1 cut(s)	548
PpuMI	RGGWCCY	2 cut(s)	198, 620
Psp5II	RGGWCCY	2 cut(s)	198, 620
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	7 cut(s)	199, 291, 546, 593, 621, 622, 666
PspPI	GGNCC	3 cut(s)	198, 289, 620
PspPPI	RGGWCCY	2 cut(s)	198, 620
PsyI	GACNNNGTC	1 cut(s)	454
RseI	CAYNNNNRTG	1 cut(s)	35
SatI	GCNGC	4 cut(s)	51, 54, 476, 559
Sau3AI	GATC	1 cut(s)	362
Sau96I	GGNCC	3 cut(s)	198, 289, 620
ScrFI	CCNGG	3 cut(s)	196, 384, 454
SduI	GDGCHC	1 cut(s)	596
SfaNI	GCATC	1 cut(s)	575
SfoI	GGCGCC	1 cut(s)	546
SinI	GGWCC	3 cut(s)	198, 289, 620
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	5 cut(s)	121, 235, 344, 413, 425
SseBI	AGGCCT	1 cut(s)	382
SsiI	CCGC	5 cut(s)	51, 54, 489, 559, 588
SspDI	GGCGCC	1 cut(s)	544
SspMI	CTAG	2 cut(s)	264, 360
StuI	AGGCCT	1 cut(s)	382
StyD4I	CCNGG	3 cut(s)	194, 382, 452
StyI	CCWWGG	1 cut(s)	408
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	6 cut(s)	162, 342, 365, 417, 468, 609
TaqII	GACCGA	1 cut(s)	449
TasI	AATT	5 cut(s)	121, 235, 344, 413, 425
TauI	GCSGC	3 cut(s)	53, 56, 561
TseI	GCWGC	1 cut(s)	475
TspDTI	ATGAA	1 cut(s)	325
TspGWI	ACGGA	1 cut(s)	126
Tth111I	GACNNNGTC	1 cut(s)	454
VpaK11BI	GGWCC	3 cut(s)	198, 289, 620
XagI	CCTNNNNNAGG	1 cut(s)	672
XapI	RAATTY	2 cut(s)	344, 413
XspI	CTAG	2 cut(s)	264, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.