Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Reverse (-)

79142566 .. 79142997

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG562600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAATTCGATTTGCAGCTGCAGACGGAGGAGTGTGTCAAGACTGGGTCTAAGGAGATTGATAAGTTGCCCTGGAAGGGCGAGAGTGACACCAATCCCAATTACGAGTGTCTCCGGTCTGAGCTCCGGCATGTGATTCTGCTGTTCCTCCTGATCCCCTACCTCCTCGGCTTCCTCTTCTTCTTTGTCGCCGCCCTCCTCTTTGTCGAGTTCTGCTGCGGCGCCCGATCGCGCAAGTGCGACTGCCATGGCTTGAAGAAGGCCATGGAATTCGATTTGCAGCTGCAGACGGAGGAGTGTGTCAAGACCGGGTCTAAGGAGATTGATAAGTTGCCCTGGAAGGGAGGGAGTGACACCAATCCCAATTACGAGTGTCTCTGGTCTGAGCTCCGGAAGATGGCTCCGCCGTCTTGCTTTTTGAGCACGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

16.44

Weight (kDa)

5.25

Isoelectric Point (pI)

67.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AccII	CGCG	1 cut(s)	232
AccIII	TCCGGA	1 cut(s)	390
AciI	CCGC	3 cut(s)	192, 219, 404
AclWI	GGATC	1 cut(s)	148
AcsI	RAATTY	2 cut(s)	5, 269
AcyI	GRCGYC	1 cut(s)	222
AfiI	CCNNNNNNNGG	3 cut(s)	77, 341, 397
AgsI	TTSAA	1 cut(s)	256
AjnI	CCWGG	2 cut(s)	71, 335
AluBI	AGCT	4 cut(s)	19, 124, 283, 388
AluI	AGCT	4 cut(s)	19, 124, 283, 388
Alw21I	GWGCWC	3 cut(s)	126, 390, 425
Alw26I	GTCTC	2 cut(s)	116, 380
AlwI	GGATC	1 cut(s)	148
Aor13HI	TCCGGA	1 cut(s)	390
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	5 cut(s)	16, 19, 216, 280, 283
ApoI	RAATTY	2 cut(s)	5, 269
AspLEI	GCGC	2 cut(s)	224, 234
AsuC2I	CCSGG	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	221
BanII	GRGCYC	2 cut(s)	126, 390
Bbv12I	GWGCWC	3 cut(s)	126, 390, 425
BbvI	GCAGC	5 cut(s)	6, 28, 203, 270, 292
BccI	CCATC	1 cut(s)	391
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	2 cut(s)	73, 337
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	116, 380
BfmI	CTRYAG	2 cut(s)	20, 284
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	7 cut(s)	17, 20, 192, 217, 220, 281, 284
BlsI	GCNGC	7 cut(s)	18, 21, 193, 218, 221, 282, 285
Bme1390I	CCNGG	3 cut(s)	73, 310, 337
BmiI	GGNNCC	2 cut(s)	223, 402
BmrFI	CCNGG	3 cut(s)	73, 310, 337
BmrI	ACTGGG	1 cut(s)	54
BmuI	ACTGGG	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	5 cut(s)	71, 166, 247, 264, 335
BsaWI	WCCGGW	2 cut(s)	114, 390
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 341, 397
Bse1I	ACTGG	1 cut(s)	49
BseAI	TCCGGA	1 cut(s)	390
BseBI	CCWGG	2 cut(s)	73, 337
BseDI	CCNNGG	5 cut(s)	71, 166, 247, 264, 335
BseLI	CCNNNNNNNGG	3 cut(s)	77, 341, 397
BseMII	CTCAG	2 cut(s)	111, 375
BseNI	ACTGG	1 cut(s)	49
BseRI	GAGGAG	4 cut(s)	44, 155, 188, 308
BseXI	GCAGC	5 cut(s)	6, 28, 203, 270, 292
Bsh1236I	CGCG	1 cut(s)	232
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	263
BshNI	GGYRCC	1 cut(s)	221
BsiEI	CGRYCG	1 cut(s)	230
BsiHKAI	GWGCWC	3 cut(s)	126, 390, 425
BsiSI	CCGG	4 cut(s)	115, 127, 309, 391
BslI	CCNNNNNNNGG	3 cut(s)	77, 341, 397
BsmAI	GTCTC	2 cut(s)	116, 380
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	3 cut(s)	126, 390, 425
Bsp13I	TCCGGA	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	153, 227
Bsp19I	CCATGG	2 cut(s)	247, 264
BspACI	CCGC	3 cut(s)	192, 219, 404
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	2 cut(s)	112, 376
BspEI	TCCGGA	1 cut(s)	390
BspFNI	CGCG	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	223, 402
BspMAI	CTGCAG	2 cut(s)	24, 288
BspPI	GGATC	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	49
BssECI	CCNNGG	5 cut(s)	71, 166, 247, 264, 335
BssMI	GATC	2 cut(s)	153, 227
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	2 cut(s)	247, 264
Bst2UI	CCWGG	2 cut(s)	73, 337
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	182
BstACI	GRCGYC	1 cut(s)	222
BstDEI	CTNAG	4 cut(s)	51, 120, 315, 384
BstDSI	CCRYGG	2 cut(s)	247, 264
BstFNI	CGCG	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	2 cut(s)	224, 234
BstKTI	GATC	2 cut(s)	156, 230
BstMAI	GTCTC	2 cut(s)	116, 380
BstMBI	GATC	2 cut(s)	153, 227
BstMCI	CGRYCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	420
BstNI	CCWGG	2 cut(s)	73, 337
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	3 cut(s)	71, 308, 335
BstSFI	CTRYAG	2 cut(s)	20, 284
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	5 cut(s)	6, 28, 203, 270, 292
BsuRI	GGCC	1 cut(s)	263
BtgI	CCRYGG	2 cut(s)	247, 264
CfoI	GCGC	2 cut(s)	224, 234
CviAII	CATG	3 cut(s)	131, 248, 265
CviJI	RGCY	8 cut(s)	19, 124, 171, 252, 263, 283, 388, 401
CviKI_1	RGCY	8 cut(s)	19, 124, 171, 252, 263, 283, 388, 401
DdeI	CTNAG	4 cut(s)	51, 120, 315, 384
DinI	GGCGCC	1 cut(s)	223
DpnI	GATC	2 cut(s)	155, 229
DpnII	GATC	2 cut(s)	153, 227
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
EciI	GGCGGA	1 cut(s)	393
Ecl136II	GAGCTC	2 cut(s)	124, 388
Eco130I	CCWWGG	2 cut(s)	247, 264
Eco24I	GRGCYC	2 cut(s)	126, 390
Eco53kI	GAGCTC	2 cut(s)	124, 388
EcoICRI	GAGCTC	2 cut(s)	124, 388
EcoRI	GAATTC	2 cut(s)	5, 269
EcoRII	CCWGG	2 cut(s)	71, 335
EcoT14I	CCWWGG	2 cut(s)	247, 264
EcoT38I	GRGCYC	2 cut(s)	126, 390
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
ErhI	CCWWGG	2 cut(s)	247, 264
FaeI	CATG	3 cut(s)	134, 251, 268
FaiI	YATR	3 cut(s)	132, 249, 266
FatI	CATG	3 cut(s)	130, 247, 264
Fnu4HI	GCNGC	7 cut(s)	17, 20, 192, 217, 220, 281, 284
FriOI	GRGCYC	2 cut(s)	126, 390
Fsp4HI	GCNGC	7 cut(s)	17, 20, 192, 217, 220, 281, 284
GlaI	GCGC	2 cut(s)	223, 233
GluI	GCNGC	7 cut(s)	17, 20, 192, 217, 220, 281, 284
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	4 cut(s)	115, 127, 309, 391
HhaI	GCGC	2 cut(s)	224, 234
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	134, 251, 268
Hin6I	GCGC	2 cut(s)	222, 232
HinP1I	GCGC	2 cut(s)	222, 232
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	4 cut(s)	115, 127, 309, 391
Hpy188I	TCNGA	2 cut(s)	121, 385
Hpy188III	TCNNGA	4 cut(s)	40, 151, 304, 391
HpyAV	CCTTC	3 cut(s)	70, 253, 334
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	4 cut(s)	16, 22, 280, 286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	420
HpyF3I	CTNAG	4 cut(s)	51, 120, 315, 384
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	134, 251, 268
HspAI	GCGC	2 cut(s)	222, 232
KasI	GGCGCC	1 cut(s)	221
Kpn2I	TCCGGA	1 cut(s)	390
Kzo9I	GATC	2 cut(s)	153, 227
LmnI	GCTCC	3 cut(s)	129, 393, 406
Lsp1109I	GCAGC	5 cut(s)	6, 28, 203, 270, 292
MaeIII	GTNAC	2 cut(s)	86, 350
MalI	GATC	2 cut(s)	155, 229
MboI	GATC	2 cut(s)	153, 227
MboII	GAAGA	4 cut(s)	169, 172, 268, 406
MhlI	GDGCHC	3 cut(s)	126, 390, 425
MluCI	AATT	4 cut(s)	5, 100, 269, 364
Mly113I	GGCGCC	1 cut(s)	222
MnlI	CCTC	9 cut(s)	22, 158, 173, 176, 185, 206, 209, 286, 338
MroI	TCCGGA	1 cut(s)	390
MspA1I	CMGCKG	2 cut(s)	19, 283
MspI	CCGG	4 cut(s)	115, 127, 309, 391
MspR9I	CCNGG	3 cut(s)	73, 310, 337
MvaI	CCWGG	2 cut(s)	73, 337
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	1 cut(s)	420
NarI	GGCGCC	1 cut(s)	222
NciI	CCSGG	1 cut(s)	310
NcoI	CCATGG	2 cut(s)	247, 264
NdeII	GATC	2 cut(s)	153, 227
NlaIII	CATG	3 cut(s)	134, 251, 268
NlaIV	GGNNCC	2 cut(s)	223, 402
NmeAIII	GCCGAG	1 cut(s)	147
NmuCI	GTSAC	2 cut(s)	86, 350
NspI	RCATGY	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	136
PflFI	GACNNNGTC	2 cut(s)	46, 310
PkrI	GCNGC	7 cut(s)	18, 21, 193, 218, 221, 282, 285
Ple19I	CGATCG	1 cut(s)	230
PluTI	GGCGCC	1 cut(s)	225
Psp124BI	GAGCTC	2 cut(s)	126, 390
Psp6I	CCWGG	2 cut(s)	71, 335
PspGI	CCWGG	2 cut(s)	71, 335
PspN4I	GGNNCC	2 cut(s)	223, 402
PstI	CTGCAG	2 cut(s)	24, 288
PsyI	GACNNNGTC	2 cut(s)	46, 310
PvuI	CGATCG	1 cut(s)	230
PvuII	CAGCTG	2 cut(s)	19, 283
SacI	GAGCTC	2 cut(s)	126, 390
SatI	GCNGC	7 cut(s)	17, 20, 192, 217, 220, 281, 284
Sau3AI	GATC	2 cut(s)	153, 227
ScrFI	CCNGG	3 cut(s)	73, 310, 337
SduI	GDGCHC	3 cut(s)	126, 390, 425
SetI	ASST	5 cut(s)	21, 126, 165, 285, 390
SfcI	CTRYAG	2 cut(s)	20, 284
SfoI	GGCGCC	1 cut(s)	223
Sse9I	AATT	4 cut(s)	5, 100, 269, 364
SsiI	CCGC	3 cut(s)	192, 219, 404
SspDI	GGCGCC	1 cut(s)	221
SstI	GAGCTC	2 cut(s)	126, 390
StyD4I	CCNGG	3 cut(s)	71, 308, 335
StyI	CCWWGG	2 cut(s)	247, 264
TaaI	ACNGT	1 cut(s)	427
TaqI	TCGA	3 cut(s)	9, 207, 273
TasI	AATT	4 cut(s)	5, 100, 269, 364
TauI	GCSGC	2 cut(s)	194, 222
TfiI	GAWTC	1 cut(s)	136
TseFI	GTSAC	2 cut(s)	86, 350
TseI	GCWGC	5 cut(s)	16, 19, 216, 280, 283
Tsp45I	GTSAC	2 cut(s)	86, 350
TspGWI	ACGGA	2 cut(s)	41, 305
Tth111I	GACNNNGTC	2 cut(s)	46, 310
XapI	RAATTY	2 cut(s)	5, 269
XceI	RCATGY	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.