Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Reverse (-)

6354969 .. 6357220

Gene Structure 2252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G19025.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCTCCATCTCTTCCTCTTCTCCTCCGCCGCCTCCACCACCACCGCCGTAGAAGACAATTCCACCACCATGCCCCCTTCTTCTAGATCCGCCGCTAATCAAAACTCCTCCTCTTCTCTCCATCTCTGCAAACATTCACCGTCGGCGACTCTCGACCTCTTAATCCTAATCCTCGTCCTCTTCTCCGGCACATTCCTCCTCTCCTCTTACTTCTCATACCTTATCCACTCCTTATCTCTCCTCTCCTCTCATTTCCCTTCAATCACCATCTCCCTCTCCTCTCTCCTCCCTCCTCTAATCATCTTCTTCTCCTCCGATCACAGCACCGAAGATGAAGATCATCATCATCCCTCAGGAAAAATCCCTCCTCCGGCTTCGTTCTTCTTCGCATTCGCAGTTTTTTTCGCGGCTTCAATTGCGTTTCTCGACCTGTGTTGTGGTTCAAGATCAAGGAAATGTCGTAACCCTAAGTGTAAAGGAATGAAGAAAGCTATGGAGTTTGATTTGCAGTTACAGACAGAGGAATGTGTTAAATCCGGTTCGGTTAAAGAGATTGATCGGTTACCGTGGAAAGGAGGTAGTGAGAGTAATCCTGATTATGAGTGTTTGAGAGCTGAGCTGAGGAAGATGGCTCCGGTTAATGGTCGAGCTGTTTTGATTTTCCGATCAAAATGTGGTTGCCCTATTGCTAAGCTTGAAGGTTGGGGACCTAAGAGAAGTCGGCGTCATAAAAAATCGCCGGCAAAATTAGCTGTAAAGGGATGCATAGACAATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

28.48

Weight (kDa)

9.2

Isoelectric Point (pI)

63.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	407
AciI	CCGC	6 cut(s)	27, 30, 45, 90, 93, 407
AclWI	GGATC	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	724
AfiI	CCNNNNNNNGG	3 cut(s)	370, 572, 641
AgsI	TTSAA	4 cut(s)	261, 414, 444, 698
AluBI	AGCT	6 cut(s)	491, 614, 619, 650, 694, 752
AluI	AGCT	6 cut(s)	491, 614, 619, 650, 694, 752
AlwI	GGATC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	707
AsuHPI	GGTGA	2 cut(s)	129, 256
AvaII	GGWCC	1 cut(s)	707
AxyI	CCTNAGG	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	60
BbvCI	CCTCAGC	1 cut(s)	620
BccI	CCATC	4 cut(s)	15, 129, 275, 622
BceAI	ACGGC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	3 cut(s)	30, 93, 408
BlpI	GCTNAGC	2 cut(s)	615, 690
BlsI	GCNGC	3 cut(s)	31, 94, 409
Bme18I	GGWCC	1 cut(s)	707
BmgT120I	GGNCC	1 cut(s)	707
BmiI	GGNNCC	2 cut(s)	633, 708
BmsI	GCATC	1 cut(s)	752
BpiI	GAAGAC	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	620
Bpu1102I	GCTNAGC	2 cut(s)	615, 690
BsaBI	GATNNNNATC	2 cut(s)	336, 342
BsaHI	GRCGYC	1 cut(s)	724
BsaJI	CCNNGG	1 cut(s)	566
BsaWI	WCCGGW	2 cut(s)	536, 634
Bsc4I	CCNNNNNNNGG	3 cut(s)	370, 572, 641
Bse118I	RCCGGY	1 cut(s)	739
Bse21I	CCTNAGG	1 cut(s)	352
Bse8I	GATNNNNATC	2 cut(s)	336, 342
BseDI	CCNNGG	1 cut(s)	566
BseGI	GGATG	2 cut(s)	346, 767
BseJI	GATNNNNATC	2 cut(s)	336, 342
BseLI	CCNNNNNNNGG	3 cut(s)	370, 572, 641
BseMII	CTCAG	3 cut(s)	366, 606, 611
Bsh1236I	CGCG	1 cut(s)	407
BsiSI	CCGG	5 cut(s)	186, 371, 537, 635, 740
BslFI	GGGAC	1 cut(s)	720
BslI	CCNNNNNNNGG	3 cut(s)	370, 572, 641
BsmFI	GGGAC	1 cut(s)	720
BsmI	GAATGC	1 cut(s)	389
Bsp143I	GATC	6 cut(s)	86, 316, 337, 446, 556, 665
Bsp1720I	GCTNAGC	2 cut(s)	615, 690
BspACI	CCGC	6 cut(s)	27, 30, 45, 90, 93, 407
BspCNI	CTCAG	3 cut(s)	365, 607, 612
BspFNI	CGCG	1 cut(s)	407
BspLI	GGNNCC	2 cut(s)	633, 708
BspPI	GGATC	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	739
BssAI	RCCGGY	1 cut(s)	739
BssECI	CCNNGG	1 cut(s)	566
BssMI	GATC	6 cut(s)	86, 316, 337, 446, 556, 665
BssNI	GRCGYC	1 cut(s)	724
Bst4CI	ACNGT	2 cut(s)	141, 567
Bst6I	CTCTTC	4 cut(s)	17, 23, 118, 185
BstACI	GRCGYC	1 cut(s)	724
BstC8I	GCNNGC	1 cut(s)	741
BstDEI	CTNAG	6 cut(s)	352, 468, 615, 620, 690, 711
BstDSI	CCRYGG	1 cut(s)	566
BstEII	GGTNACC	1 cut(s)	561
BstF5I	GGATG	2 cut(s)	346, 767
BstFNI	CGCG	1 cut(s)	407
BstKTI	GATC	6 cut(s)	89, 319, 340, 449, 559, 668
BstMBI	GATC	6 cut(s)	86, 316, 337, 446, 556, 665
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 749
BstPI	GGTNACC	1 cut(s)	561
BstUI	CGCG	1 cut(s)	407
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
Bsu36I	CCTNAGG	1 cut(s)	352
BtgI	CCRYGG	1 cut(s)	566
BtsCI	GGATG	2 cut(s)	346, 767
Cac8I	GCNNGC	1 cut(s)	741
Cfr10I	RCCGGY	1 cut(s)	739
Cfr13I	GGNCC	1 cut(s)	707
CseI	GACGC	1 cut(s)	713
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	9 cut(s)	374, 410, 491, 614, 619, 632, 650, 694, 752
CviKI_1	RGCY	9 cut(s)	374, 410, 491, 614, 619, 632, 650, 694, 752
DdeI	CTNAG	6 cut(s)	352, 468, 615, 620, 690, 711
DpnI	GATC	6 cut(s)	88, 318, 339, 448, 558, 667
DpnII	GATC	6 cut(s)	86, 316, 337, 446, 556, 665
Eam1104I	CTCTTC	4 cut(s)	17, 23, 118, 185
EarI	CTCTTC	4 cut(s)	17, 23, 118, 185
EciI	GGCGGA	2 cut(s)	16, 79
Eco47I	GGWCC	1 cut(s)	707
Eco81I	CCTNAGG	1 cut(s)	352
Eco91I	GGTNACC	1 cut(s)	561
EcoO109I	RGGNCCY	1 cut(s)	707
EcoO65I	GGTNACC	1 cut(s)	561
EcoT22I	ATGCAT	1 cut(s)	767
FaeI	CATG	1 cut(s)	73
FaiI	YATR	6 cut(s)	71, 217, 494, 600, 729, 767
FaqI	GGGAC	1 cut(s)	720
FatI	CATG	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	30, 93, 408
FokI	GGATG	2 cut(s)	333, 774
Fsp4HI	GCNGC	3 cut(s)	30, 93, 408
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	3 cut(s)	30, 93, 408
HapII	CCGG	5 cut(s)	186, 371, 537, 635, 740
HgaI	GACGC	1 cut(s)	713
Hin1I	GRCGYC	1 cut(s)	724
Hin1II	CATG	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	5 cut(s)	186, 371, 537, 635, 740
HphI	GGTGA	2 cut(s)	129, 256
Hpy188I	TCNGA	2 cut(s)	316, 665
Hpy188III	TCNNGA	6 cut(s)	84, 152, 354, 425, 444, 593
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	3 cut(s)	87, 267, 692
HpyCH4III	ACNGT	2 cut(s)	141, 567
HpyCH4V	TGCA	3 cut(s)	129, 508, 765
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 749
HpyF3I	CTNAG	6 cut(s)	352, 468, 615, 620, 690, 711
Hsp92I	GRCGYC	1 cut(s)	724
Hsp92II	CATG	1 cut(s)	73
KroI	GCCGGC	1 cut(s)	739
KroNI	GCCGGC	1 cut(s)	741
Kzo9I	GATC	6 cut(s)	86, 316, 337, 446, 556, 665
LmnI	GCTCC	2 cut(s)	9, 637
LpnPI	CCDG	8 cut(s)	199, 339, 384, 443, 550, 606, 648, 753
LweI	GCATC	1 cut(s)	752
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	3 cut(s)	461, 510, 561
MalI	GATC	6 cut(s)	88, 318, 339, 448, 558, 667
MboI	GATC	6 cut(s)	86, 316, 337, 446, 556, 665
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	1 cut(s)	86
MluCI	AATT	3 cut(s)	58, 414, 746
MlyI	GAGTC	1 cut(s)	142
Mph1103I	ATGCAT	1 cut(s)	767
MroNI	GCCGGC	1 cut(s)	739
MseI	TTAA	4 cut(s)	161, 531, 546, 639
MslI	CAYNNNNRTG	1 cut(s)	68
MspI	CCGG	5 cut(s)	186, 371, 537, 635, 740
MunI	CAATTG	1 cut(s)	414
Mva1269I	GAATGC	1 cut(s)	389
MvnI	CGCG	1 cut(s)	407
MwoI	GCNNNNNNNGC	2 cut(s)	416, 749
NaeI	GCCGGC	1 cut(s)	741
NdeII	GATC	6 cut(s)	86, 316, 337, 446, 556, 665
NgoMIV	GCCGGC	1 cut(s)	739
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	2 cut(s)	633, 708
NsiI	ATGCAT	1 cut(s)	767
PctI	GAATGC	1 cut(s)	389
PdiI	GCCGGC	1 cut(s)	741
PkrI	GCNGC	3 cut(s)	31, 94, 409
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PpuMI	RGGWCCY	1 cut(s)	707
Psp5II	RGGWCCY	1 cut(s)	707
PspEI	GGTNACC	1 cut(s)	561
PspN4I	GGNNCC	2 cut(s)	633, 708
PspPI	GGNCC	1 cut(s)	707
PspPPI	RGGWCCY	1 cut(s)	707
PsuI	RGATCY	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	68
SaqAI	TTAA	4 cut(s)	161, 531, 546, 639
SatI	GCNGC	3 cut(s)	30, 93, 408
Sau3AI	GATC	6 cut(s)	86, 316, 337, 446, 556, 665
Sau96I	GGNCC	1 cut(s)	707
SchI	GAGTC	1 cut(s)	142
SfaNI	GCATC	1 cut(s)	752
SinI	GGWCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	68
Sse9I	AATT	3 cut(s)	58, 414, 746
SsiI	CCGC	6 cut(s)	27, 30, 45, 90, 93, 407
SspMI	CTAG	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	141, 567
TaqI	TCGA	3 cut(s)	153, 426, 646
TasI	AATT	3 cut(s)	58, 414, 746
TauI	GCSGC	3 cut(s)	32, 95, 410
Tru1I	TTAA	4 cut(s)	161, 531, 546, 639
Tru9I	TTAA	4 cut(s)	161, 531, 546, 639
TspDTI	ATGAA	2 cut(s)	348, 497
VpaK11BI	GGWCC	1 cut(s)	707
XbaI	TCTAGA	1 cut(s)	83
XspI	CTAG	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.