Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Reverse (-)

41310895 .. 41311137

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG382200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGAATTAGATTTGCAGCTGCAGACGGAGGAGTGTGTCAAGACCGGGTCTAAGGAGATCGATAAGTTGCCCTGGAAGGGCGGGAGTGACACCAATCCCGATTACGAGTGTCTCCGGTCCGAGCTCCGGAAGATGGCTCTGCCCAATGGCTTTGCCGTCTTGCTTTTTGGAGCACGGTGTGGGTGCCCTGTCGCCAAGCTTGAAGGCTGGGGTCCCAAGCGAGACCACTGGCATAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

80

Amino Acids

9.06

Weight (kDa)

7.67

Isoelectric Point (pI)

63.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	183
AccIII	TCCGGA	1 cut(s)	126
AciI	CCGC	1 cut(s)	81
AdeI	CACNNNGTG	1 cut(s)	179
AfiI	CCNNNNNNNGG	3 cut(s)	77, 126, 133
AgsI	TTSAA	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	3 cut(s)	19, 124, 199
AluI	AGCT	3 cut(s)	19, 124, 199
Alw21I	GWGCWC	2 cut(s)	126, 175
Alw26I	GTCTC	2 cut(s)	116, 216
Aor13HI	TCCGGA	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	16, 19
AspS9I	GGNCC	2 cut(s)	117, 212
AsuC2I	CCSGG	1 cut(s)	46
AvaII	GGWCC	2 cut(s)	117, 212
BaeGI	GKGCMC	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	2 cut(s)	126, 175
BbvI	GCAGC	2 cut(s)	6, 28
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	2 cut(s)	116, 216
BfmI	CTRYAG	1 cut(s)	20
BisI	GCNGC	2 cut(s)	17, 20
BlsI	GCNGC	2 cut(s)	18, 21
Bme1390I	CCNGG	2 cut(s)	46, 73
Bme18I	GGWCC	2 cut(s)	117, 212
BmgT120I	GGNCC	2 cut(s)	117, 212
BmiI	GGNNCC	3 cut(s)	185, 213, 214
BmrFI	CCNGG	2 cut(s)	46, 73
BpuMI	CCSGG	1 cut(s)	46
Bsa29I	ATCGAT	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	71
BsaWI	WCCGGW	2 cut(s)	114, 126
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 126, 133
Bse1I	ACTGG	1 cut(s)	233
BseAI	TCCGGA	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	73
BseCI	ATCGAT	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	71
BseLI	CCNNNNNNNGG	3 cut(s)	77, 126, 133
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	6, 28
BseYI	CCCAGC	1 cut(s)	207
BshNI	GGYRCC	1 cut(s)	183
BshVI	ATCGAT	1 cut(s)	60
BsiHKAI	GWGCWC	2 cut(s)	126, 175
BsiSI	CCGG	3 cut(s)	45, 115, 127
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	3 cut(s)	77, 126, 133
BsmAI	GTCTC	2 cut(s)	116, 216
BsmFI	GGGAC	1 cut(s)	198
Bso31I	GGTCTC	1 cut(s)	216
Bsp1286I	GDGCHC	3 cut(s)	126, 175, 188
Bsp13I	TCCGGA	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	1 cut(s)	81
BspDI	ATCGAT	1 cut(s)	60
BspEI	TCCGGA	1 cut(s)	126
BspLI	GGNNCC	3 cut(s)	185, 213, 214
BspMAI	CTGCAG	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	183
BspTNI	GGTCTC	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	60
BstMAI	GTCTC	2 cut(s)	116, 216
BstMBI	GATC	1 cut(s)	57
BstNI	CCWGG	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	44, 71
BstSFI	CTRYAG	1 cut(s)	20
BstSLI	GKGCMC	1 cut(s)	188
BstV1I	GCAGC	2 cut(s)	6, 28
Bsu15I	ATCGAT	1 cut(s)	60
BsuTUI	ATCGAT	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	117, 212
ClaI	ATCGAT	1 cut(s)	60
CpoI	CGGWCCG	1 cut(s)	117
CspI	CGGWCCG	1 cut(s)	117
CviJI	RGCY	6 cut(s)	19, 124, 137, 150, 199, 207
CviKI_1	RGCY	6 cut(s)	19, 124, 137, 150, 199, 207
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
DraIII	CACNNNGTG	1 cut(s)	179
Ecl136II	GAGCTC	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	216
Eco47I	GGWCC	2 cut(s)	117, 212
Eco53kI	GAGCTC	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	126
FaiI	YATR	1 cut(s)	234
FaqI	GGGAC	1 cut(s)	198
FauI	CCCGC	1 cut(s)	74
Fnu4HI	GCNGC	2 cut(s)	17, 20
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	2 cut(s)	17, 20
GluI	GCNGC	2 cut(s)	17, 20
GsaI	CCCAGC	1 cut(s)	211
HapII	CCGG	3 cut(s)	45, 115, 127
HindIII	AAGCTT	1 cut(s)	197
HpaII	CCGG	3 cut(s)	45, 115, 127
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	3 cut(s)	40, 98, 127
HpyAV	CCTTC	2 cut(s)	70, 197
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4V	TGCA	2 cut(s)	16, 22
HpyF3I	CTNAG	1 cut(s)	51
KflI	GGGWCCC	1 cut(s)	212
Kpn2I	TCCGGA	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	57
LmnI	GCTCC	2 cut(s)	129, 170
LpnPI	CCDG	8 cut(s)	58, 58, 85, 128, 140, 193, 201, 214
Lsp1109I	GCAGC	2 cut(s)	6, 28
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	1 cut(s)	142
MhlI	GDGCHC	3 cut(s)	126, 175, 188
MluCI	AATT	1 cut(s)	5
MnlI	CCTC	1 cut(s)	22
MroI	TCCGGA	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	3 cut(s)	45, 115, 127
MspR9I	CCNGG	2 cut(s)	46, 73
MvaI	CCWGG	1 cut(s)	73
NciI	CCSGG	1 cut(s)	46
NdeII	GATC	1 cut(s)	57
NlaIV	GGNNCC	3 cut(s)	185, 213, 214
NmuCI	GTSAC	1 cut(s)	86
PflFI	GACNNNGTC	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	18, 21
PpuMI	RGGWCCY	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	71
PspN4I	GGNNCC	3 cut(s)	185, 213, 214
PspPI	GGNCC	2 cut(s)	117, 212
PspPPI	RGGWCCY	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	24
PsyI	GACNNNGTC	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	19
Rsr2I	CGGWCCG	1 cut(s)	117
RsrII	CGGWCCG	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	126
SatI	GCNGC	2 cut(s)	17, 20
Sau3AI	GATC	1 cut(s)	57
Sau96I	GGNCC	2 cut(s)	117, 212
ScrFI	CCNGG	2 cut(s)	46, 73
SduI	GDGCHC	3 cut(s)	126, 175, 188
SetI	ASST	3 cut(s)	21, 126, 201
SfcI	CTRYAG	1 cut(s)	20
SinI	GGWCC	2 cut(s)	117, 212
Sse9I	AATT	1 cut(s)	5
SsiI	CCGC	1 cut(s)	81
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	44, 71
TaaI	ACNGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	5
TscAI	CASTG	1 cut(s)	233
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	2 cut(s)	16, 19
Tsp45I	GTSAC	1 cut(s)	86
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	233
Tth111I	GACNNNGTC	1 cut(s)	46
VpaK11BI	GGWCC	2 cut(s)	117, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.