Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Reverse (-)

15663842 .. 15667038

Gene Structure 3197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1182900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCGCCATTTGCTACTCGCCACCACCACCACCATCATGCCCTCCTCCTCCTTCTATGCCGCTGCCACGTCATCCTCCTCCTCCTATCCAACCCCCAAACCCAAATCCTCAAACCCTAACCCTAACTCAAACCCTAATTGCACCCTCCTCTGCAAGCACTCGCCGTCGGCCACCCTCGACCTCCTCATCCTCATCCTCGTCCTCTTCTCCGGGACCTTCCTCATCACCTCTTACTTTTCCTACATCTTCAACTCCCTCTCGCTCCTCCTCTCTCACTCCACCCTCCCCATCCACCTCCATCACATTCCCGTCCCCTACGTCGTCGGCTTCGTCGCCTTCTTCGCCGCCACGCTGTTCGTAGTCGAGTTCTGCTGCGGCATTCGATCCAGGAAGTGCGATAGGCCCGGATGTAAGGGCTTGAAGAAGGCCATGGAATTCGATTTGCAATTGCAATCGGAGGAGTGTGTCAAGTCCGGGTCTAAAGATATCGATAGGCTGCCGTGGAAGGGCGGCAGCGAGGGCAATCCTGATTACGAGTGCCTCAGGACTGAGCTGAGGCGGATGGCGCCGACGAATGGCCGTGCCGTGCTGCTGTTTCGGGCGCCATGCGGATGCCCGGTGGCCAAGCTCAAAGGCTGGGGTCCCAAGAGAGGACGCCGGCATAAAAAGGCTCTGGCCAGTATGGCTCTTAATGGAGGAGATCATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

25.9

Weight (kDa)

9.6

Isoelectric Point (pI)

57.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	565, 601
AciI	CCGC	6 cut(s)	60, 345, 375, 510, 559, 609
AclWI	GGATC	1 cut(s)	378
AcoI	YGGCCR	4 cut(s)	168, 577, 621, 675
AcsI	RAATTY	1 cut(s)	434
AcyI	GRCGYC	3 cut(s)	566, 602, 655
AfiI	CCNNNNNNNGG	3 cut(s)	506, 575, 650
AgsI	TTSAA	2 cut(s)	250, 421
AjiI	CACGTC	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	386
AluBI	AGCT	2 cut(s)	553, 628
AluI	AGCT	2 cut(s)	553, 628
AlwI	GGATC	1 cut(s)	378
AoxI	GGCC	6 cut(s)	168, 401, 426, 577, 621, 675
ApeKI	GCWGC	5 cut(s)	62, 372, 496, 513, 589
ApoI	RAATTY	1 cut(s)	434
AspLEI	GCGC	3 cut(s)	6, 568, 604
AspS9I	GGNCC	3 cut(s)	213, 402, 641
AsuC2I	CCSGG	4 cut(s)	211, 405, 475, 617
AsuHPI	GGTGA	1 cut(s)	217
AvaII	GGWCC	2 cut(s)	213, 641
AxyI	CCTNAGG	1 cut(s)	542
BalI	TGGCCA	2 cut(s)	623, 677
BanI	GGYRCC	2 cut(s)	565, 601
BbvCI	CCTCAGC	1 cut(s)	554
BbvI	GCAGC	5 cut(s)	49, 359, 483, 525, 576
BccI	CCATC	4 cut(s)	41, 296, 306, 556
BceAI	ACGGC	4 cut(s)	148, 484, 564, 569
BciT130I	CCWGG	1 cut(s)	388
BcnI	CCSGG	4 cut(s)	211, 405, 475, 617
BfoI	RGCGCY	2 cut(s)	569, 605
BglI	GCCNNNNNGGC	1 cut(s)	683
BisI	GCNGC	9 cut(s)	60, 63, 345, 373, 376, 497, 511, 514, 590
BlsI	GCNGC	9 cut(s)	61, 64, 346, 374, 377, 498, 512, 515, 591
Bme1390I	CCNGG	5 cut(s)	211, 388, 405, 475, 617
Bme18I	GGWCC	2 cut(s)	213, 641
BmgBI	CACGTC	1 cut(s)	69
BmgT120I	GGNCC	3 cut(s)	213, 402, 641
BmiI	GGNNCC	5 cut(s)	214, 567, 603, 642, 643
BmrFI	CCNGG	5 cut(s)	211, 388, 405, 475, 617
BmsI	GCATC	1 cut(s)	602
Bpu10I	CCTNAGC	1 cut(s)	554
BpuMI	CCSGG	4 cut(s)	211, 405, 475, 617
Bsa29I	ATCGAT	1 cut(s)	489
BsaHI	GRCGYC	3 cut(s)	566, 602, 655
BsaJI	CCNNGG	2 cut(s)	429, 500
Bsc4I	CCNNNNNNNGG	3 cut(s)	506, 575, 650
Bse118I	RCCGGY	1 cut(s)	657
Bse1I	ACTGG	1 cut(s)	678
Bse21I	CCTNAGG	1 cut(s)	542
BseBI	CCWGG	1 cut(s)	388
BseCI	ATCGAT	1 cut(s)	489
BseDI	CCNNGG	2 cut(s)	429, 500
BseGI	GGATG	7 cut(s)	71, 186, 192, 288, 413, 567, 617
BseLI	CCNNNNNNNGG	3 cut(s)	506, 575, 650
BseMII	CTCAG	3 cut(s)	540, 545, 556
BseNI	ACTGG	1 cut(s)	678
BseXI	GCAGC	5 cut(s)	49, 359, 483, 525, 576
BseYI	CCCAGC	1 cut(s)	636
BshFI	GGCC	6 cut(s)	170, 403, 428, 579, 623, 677
BshNI	GGYRCC	2 cut(s)	565, 601
BshVI	ATCGAT	1 cut(s)	489
BsiSI	CCGG	5 cut(s)	210, 405, 474, 617, 658
BslFI	GGGAC	3 cut(s)	226, 296, 627
BslI	CCNNNNNNNGG	3 cut(s)	506, 575, 650
BsmFI	GGGAC	3 cut(s)	226, 296, 627
BsmI	GAATGC	1 cut(s)	378
BsnI	GGCC	6 cut(s)	170, 403, 428, 579, 623, 677
Bsp143I	GATC	2 cut(s)	383, 700
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	6 cut(s)	60, 345, 375, 510, 559, 609
BspANI	GGCC	6 cut(s)	170, 403, 428, 579, 623, 677
BspCNI	CTCAG	3 cut(s)	541, 546, 555
BspDI	ATCGAT	1 cut(s)	489
BspLI	GGNNCC	5 cut(s)	214, 567, 603, 642, 643
BspPI	GGATC	1 cut(s)	378
BspT107I	GGYRCC	2 cut(s)	565, 601
BsrFI	RCCGGY	1 cut(s)	657
BsrI	ACTGG	1 cut(s)	678
BssAI	RCCGGY	1 cut(s)	657
BssECI	CCNNGG	2 cut(s)	429, 500
BssMI	GATC	2 cut(s)	383, 700
BssNI	GRCGYC	3 cut(s)	566, 602, 655
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	388
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	3 cut(s)	566, 602, 655
BstC8I	GCNNGC	2 cut(s)	155, 659
BstDEI	CTNAG	3 cut(s)	542, 549, 554
BstDSI	CCRYGG	2 cut(s)	429, 500
BstF5I	GGATG	7 cut(s)	71, 186, 192, 288, 413, 567, 617
BstH2I	RGCGCY	2 cut(s)	569, 605
BstHHI	GCGC	3 cut(s)	6, 568, 604
BstKTI	GATC	2 cut(s)	386, 703
BstMBI	GATC	2 cut(s)	383, 700
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 341, 519, 565, 683
BstNI	CCWGG	1 cut(s)	388
BstSCI	CCNGG	5 cut(s)	209, 386, 403, 473, 615
BstV1I	GCAGC	5 cut(s)	49, 359, 483, 525, 576
Bsu15I	ATCGAT	1 cut(s)	489
Bsu36I	CCTNAGG	1 cut(s)	542
BsuRI	GGCC	6 cut(s)	170, 403, 428, 579, 623, 677
BsuTUI	ATCGAT	1 cut(s)	489
BtgI	CCRYGG	2 cut(s)	429, 500
BtgZI	GCGATG	1 cut(s)	689
BtrI	CACGTC	1 cut(s)	69
BtsCI	GGATG	7 cut(s)	71, 186, 192, 288, 413, 567, 617
Cac8I	GCNNGC	2 cut(s)	155, 659
CfoI	GCGC	3 cut(s)	6, 568, 604
Cfr10I	RCCGGY	1 cut(s)	657
Cfr13I	GGNCC	3 cut(s)	213, 402, 641
ClaI	ATCGAT	1 cut(s)	489
CseI	GACGC	1 cut(s)	663
CviAII	CATG	3 cut(s)	37, 430, 606
DdeI	CTNAG	3 cut(s)	542, 549, 554
DinI	GGCGCC	2 cut(s)	567, 603
DpnI	GATC	2 cut(s)	385, 702
DpnII	GATC	2 cut(s)	383, 700
EaeI	YGGCCR	4 cut(s)	168, 577, 621, 675
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	1 cut(s)	574
Eco130I	CCWWGG	1 cut(s)	429
Eco32I	GATATC	1 cut(s)	487
Eco47I	GGWCC	2 cut(s)	213, 641
Eco81I	CCTNAGG	1 cut(s)	542
EcoO109I	RGGNCCY	2 cut(s)	213, 641
EcoRI	GAATTC	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	386
EcoRV	GATATC	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	429
EgeI	GGCGCC	2 cut(s)	567, 603
EheI	GGCGCC	2 cut(s)	567, 603
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	3 cut(s)	40, 433, 609
FaiI	YATR	6 cut(s)	38, 57, 431, 607, 663, 683
FaqI	GGGAC	3 cut(s)	226, 296, 627
FatI	CATG	3 cut(s)	36, 429, 605
Fnu4HI	GCNGC	9 cut(s)	60, 63, 345, 373, 376, 497, 511, 514, 590
FokI	GGATG	7 cut(s)	58, 173, 179, 275, 420, 574, 624
Fsp4HI	GCNGC	9 cut(s)	60, 63, 345, 373, 376, 497, 511, 514, 590
GlaI	GCGC	3 cut(s)	5, 567, 603
GluI	GCNGC	9 cut(s)	60, 63, 345, 373, 376, 497, 511, 514, 590
GsaI	CCCAGC	1 cut(s)	640
HaeII	RGCGCY	2 cut(s)	569, 605
HaeIII	GGCC	6 cut(s)	170, 403, 428, 579, 623, 677
HapII	CCGG	5 cut(s)	210, 405, 474, 617, 658
HgaI	GACGC	1 cut(s)	663
HhaI	GCGC	3 cut(s)	6, 568, 604
Hin1I	GRCGYC	3 cut(s)	566, 602, 655
Hin1II	CATG	3 cut(s)	40, 433, 609
Hin6I	GCGC	3 cut(s)	4, 566, 602
HinP1I	GCGC	3 cut(s)	4, 566, 602
HpaII	CCGG	5 cut(s)	210, 405, 474, 617, 658
HphI	GGTGA	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	457
Hpy188III	TCNNGA	2 cut(s)	527, 544
Hpy99I	CGWCG	5 cut(s)	169, 323, 326, 335, 574
HpyAV	CCTTC	5 cut(s)	61, 226, 346, 418, 499
HpyCH4IV	ACGT	2 cut(s)	68, 318
HpyCH4V	TGCA	4 cut(s)	141, 153, 445, 451
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 341, 519, 565, 683
HpyF3I	CTNAG	3 cut(s)	542, 549, 554
HpySE526I	ACGT	2 cut(s)	68, 318
Hsp92I	GRCGYC	3 cut(s)	566, 602, 655
Hsp92II	CATG	3 cut(s)	40, 433, 609
HspAI	GCGC	3 cut(s)	4, 566, 602
KasI	GGCGCC	2 cut(s)	565, 601
KflI	GGGWCCC	1 cut(s)	641
KroI	GCCGGC	1 cut(s)	657
KroNI	GCCGGC	1 cut(s)	659
Kzo9I	GATC	2 cut(s)	383, 700
LmnI	GCTCC	1 cut(s)	267
Lsp1109I	GCAGC	5 cut(s)	49, 359, 483, 525, 576
LweI	GCATC	1 cut(s)	602
MaeII	ACGT	2 cut(s)	68, 318
MalI	GATC	2 cut(s)	385, 702
MboI	GATC	2 cut(s)	383, 700
MboII	GAAGA	4 cut(s)	196, 238, 331, 433
MfeI	CAATTG	1 cut(s)	446
MlsI	TGGCCA	2 cut(s)	623, 677
MluCI	AATT	3 cut(s)	136, 434, 446
MluNI	TGGCCA	2 cut(s)	623, 677
Mly113I	GGCGCC	2 cut(s)	566, 602
MmeI	TCCRAC	1 cut(s)	113
Mox20I	TGGCCA	2 cut(s)	623, 677
MroNI	GCCGGC	1 cut(s)	657
MscI	TGGCCA	2 cut(s)	623, 677
MseI	TTAA	1 cut(s)	690
MslI	CAYNNNNRTG	2 cut(s)	35, 610
Msp20I	TGGCCA	2 cut(s)	623, 677
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	5 cut(s)	210, 405, 474, 617, 658
MspR9I	CCNGG	5 cut(s)	211, 388, 405, 475, 617
MunI	CAATTG	1 cut(s)	446
Mva1269I	GAATGC	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	388
MwoI	GCNNNNNNNGC	5 cut(s)	10, 341, 519, 565, 683
NaeI	GCCGGC	1 cut(s)	659
NarI	GGCGCC	2 cut(s)	566, 602
NciI	CCSGG	4 cut(s)	211, 405, 475, 617
NcoI	CCATGG	1 cut(s)	429
NdeII	GATC	2 cut(s)	383, 700
NgoMIV	GCCGGC	1 cut(s)	657
NlaIII	CATG	3 cut(s)	40, 433, 609
NlaIV	GGNNCC	5 cut(s)	214, 567, 603, 642, 643
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PctI	GAATGC	1 cut(s)	378
PdiI	GCCGGC	1 cut(s)	659
PfoI	TCCNGGA	2 cut(s)	209, 386
PkrI	GCNGC	9 cut(s)	61, 64, 346, 374, 377, 498, 512, 515, 591
PluTI	GGCGCC	2 cut(s)	569, 605
PpuMI	RGGWCCY	2 cut(s)	213, 641
Psp5II	RGGWCCY	2 cut(s)	213, 641
Psp6I	CCWGG	1 cut(s)	386
PspFI	CCCAGC	1 cut(s)	636
PspGI	CCWGG	1 cut(s)	386
PspN4I	GGNNCC	5 cut(s)	214, 567, 603, 642, 643
PspPI	GGNCC	3 cut(s)	213, 402, 641
PspPPI	RGGWCCY	2 cut(s)	213, 641
RseI	CAYNNNNRTG	2 cut(s)	35, 610
SaqAI	TTAA	1 cut(s)	690
SatI	GCNGC	9 cut(s)	60, 63, 345, 373, 376, 497, 511, 514, 590
Sau3AI	GATC	2 cut(s)	383, 700
Sau96I	GGNCC	3 cut(s)	213, 402, 641
ScrFI	CCNGG	5 cut(s)	211, 388, 405, 475, 617
SetI	ASST	8 cut(s)	71, 183, 218, 230, 297, 321, 555, 630
SfaNI	GCATC	1 cut(s)	602
SfoI	GGCGCC	2 cut(s)	567, 603
SinI	GGWCC	2 cut(s)	213, 641
SmiMI	CAYNNNNRTG	2 cut(s)	35, 610
Sse9I	AATT	3 cut(s)	136, 434, 446
SsiI	CCGC	6 cut(s)	60, 345, 375, 510, 559, 609
SspDI	GGCGCC	2 cut(s)	565, 601
StyD4I	CCNGG	5 cut(s)	209, 386, 403, 473, 615
StyI	CCWWGG	1 cut(s)	429
TaiI	ACGT	2 cut(s)	71, 321
TaqI	TCGA	5 cut(s)	177, 363, 382, 438, 489
TasI	AATT	3 cut(s)	136, 434, 446
TauI	GCSGC	4 cut(s)	62, 347, 378, 513
Tru1I	TTAA	1 cut(s)	690
Tru9I	TTAA	1 cut(s)	690
TseI	GCWGC	5 cut(s)	62, 372, 496, 513, 589
VpaK11BI	GGWCC	2 cut(s)	213, 641
XapI	RAATTY	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.