Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Forward (+)

43952586 .. 43956681

Gene Structure 4096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38847

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCGCCTGACGCGCCCTCCTCCCCTATTCGCCACCACCATCATGCGCTCTTCCTCAGGCTCCTCCTCCTTCACCGCCACGTCATCCTCCTCTCCGTCCCCGAAACCCAAATCCTCAAACCCTAACCACCACTCCAATGGCGGCAGCAACCAGAATTGCACGCTCCTCTGCAAGCACTCGCCGTCGGCGACTCTGGACCTCCTAATCCTCATCCTCGTCCTCTTCTCCGGCACCTTCCTCATCACCTCCTACTTCTCCTACATCTTCAACTCCCTCTCCCTCCTCCTCTCCCACTCCGCCCCGCACCTCCAGTTCCTCCCGATCCCCTACCTCCTCGGCTTCCTCTTCTTCTTCGTCGCCGCCCTCCTCTTCGTCGAGTTCTGCTGCGGCGCCCGATCGCGCAAGTGCGACCGCCACGGCTGCAAGGGCTTGAAGAAGGCCATGGAATTCGATTTGCAGCTGCAGACGGAGGAGTGTGTCAAGACCGGGTCTAAGGAGATCGATAAGTTGCCCTGGAAGGGCGGGAGTGACTCCAATCCCGATTACGAGTGTCTCCGGTCCGAGCTCCGGAAGATGGCTCCGCACAATGGCCGTGCCGTCCTGCTCTTTCGGGCGCGGTGTGGGTGCCCCGTCGCCAAGCTTGAAGGCTGGGGTCCCAAGCGAGGCCGCCGGCATAAGAAGGCTCTGGCTAGTACGATTCCCAACGGAGGAGACAATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

26.41

Weight (kDa)

9.69

Isoelectric Point (pI)

57.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	230, 389, 624
AccII	CGCG	3 cut(s)	13, 400, 616
AccIII	TCCGGA	1 cut(s)	567
AclWI	GGATC	1 cut(s)	316
AcoI	YGGCCR	1 cut(s)	589
AcsI	RAATTY	1 cut(s)	446
AcyI	GRCGYC	1 cut(s)	390
AfaI	GTAC	1 cut(s)	694
AfiI	CCNNNNNNNGG	6 cut(s)	518, 567, 574, 587, 662, 707
AgsI	TTSAA	3 cut(s)	268, 433, 644
AjiI	CACGTC	1 cut(s)	81
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	3 cut(s)	460, 565, 640
AluI	AGCT	3 cut(s)	460, 565, 640
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	2 cut(s)	557, 705
AlwI	GGATC	1 cut(s)	316
Aor13HI	TCCGGA	1 cut(s)	567
AoxI	GGCC	3 cut(s)	438, 589, 664
ApeKI	GCWGC	5 cut(s)	144, 384, 420, 457, 460
ApoI	RAATTY	1 cut(s)	446
AspLEI	GCGC	6 cut(s)	6, 15, 48, 392, 402, 616
AspS9I	GGNCC	3 cut(s)	196, 558, 653
AsuC2I	CCSGG	1 cut(s)	487
AsuHPI	GGTGA	2 cut(s)	64, 235
AvaII	GGWCC	3 cut(s)	196, 558, 653
AxyI	CCTNAGG	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	629
BanI	GGYRCC	3 cut(s)	230, 389, 624
BanII	GRGCYC	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	5 cut(s)	156, 371, 407, 447, 469
BccI	CCATC	2 cut(s)	47, 568
BceAI	ACGGC	4 cut(s)	166, 433, 576, 581
BciT130I	CCWGG	1 cut(s)	514
BcnI	CCSGG	1 cut(s)	487
BcoDI	GTCTC	2 cut(s)	557, 705
BfaI	CTAG	1 cut(s)	690
BfmI	CTRYAG	1 cut(s)	461
BfoI	RGCGCY	1 cut(s)	393
BisI	GCNGC	9 cut(s)	142, 145, 360, 385, 388, 421, 458, 461, 667
BlsI	GCNGC	9 cut(s)	143, 146, 361, 386, 389, 422, 459, 462, 668
Bme1390I	CCNGG	2 cut(s)	487, 514
Bme18I	GGWCC	3 cut(s)	196, 558, 653
BmgBI	CACGTC	1 cut(s)	81
BmgT120I	GGNCC	3 cut(s)	196, 558, 653
BmiI	GGNNCC	7 cut(s)	61, 232, 391, 579, 626, 654, 655
BmrFI	CCNGG	2 cut(s)	487, 514
BpmI	CTGGAG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	487
Bsa29I	ATCGAT	1 cut(s)	501
BsaHI	GRCGYC	1 cut(s)	390
BsaJI	CCNNGG	4 cut(s)	334, 415, 441, 512
BsaWI	WCCGGW	2 cut(s)	555, 567
BsaXI	ACNNNNNCTCC	5 cut(s)	31, 116, 146, 260, 290
Bsc4I	CCNNNNNNNGG	6 cut(s)	518, 567, 574, 587, 662, 707
Bse118I	RCCGGY	1 cut(s)	669
Bse1I	ACTGG	1 cut(s)	310
Bse21I	CCTNAGG	1 cut(s)	55
BseAI	TCCGGA	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	514
BseCI	ATCGAT	1 cut(s)	501
BseDI	CCNNGG	4 cut(s)	334, 415, 441, 512
BseGI	GGATG	2 cut(s)	83, 210
BseLI	CCNNNNNNNGG	6 cut(s)	518, 567, 574, 587, 662, 707
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	310
BseSI	GKGCMC	1 cut(s)	629
BseXI	GCAGC	5 cut(s)	156, 371, 407, 447, 469
BseYI	CCCAGC	1 cut(s)	648
Bsh1236I	CGCG	3 cut(s)	13, 400, 616
Bsh1285I	CGRYCG	2 cut(s)	398, 412
BshFI	GGCC	3 cut(s)	440, 591, 666
BshNI	GGYRCC	3 cut(s)	230, 389, 624
BshVI	ATCGAT	1 cut(s)	501
BsiEI	CGRYCG	2 cut(s)	398, 412
BsiHKAI	GWGCWC	1 cut(s)	567
BsiSI	CCGG	5 cut(s)	228, 486, 556, 568, 670
BslFI	GGGAC	2 cut(s)	82, 639
BslI	CCNNNNNNNGG	6 cut(s)	518, 567, 574, 587, 662, 707
BsmAI	GTCTC	2 cut(s)	557, 705
BsmFI	GGGAC	2 cut(s)	82, 639
BsnI	GGCC	3 cut(s)	440, 591, 666
Bsp1286I	GDGCHC	2 cut(s)	567, 629
Bsp13I	TCCGGA	1 cut(s)	567
Bsp143I	GATC	3 cut(s)	321, 395, 498
Bsp19I	CCATGG	1 cut(s)	441
BspANI	GGCC	3 cut(s)	440, 591, 666
BspCNI	CTCAG	1 cut(s)	68
BspDI	ATCGAT	1 cut(s)	501
BspEI	TCCGGA	1 cut(s)	567
BspFNI	CGCG	3 cut(s)	13, 400, 616
BspLI	GGNNCC	7 cut(s)	61, 232, 391, 579, 626, 654, 655
BspMAI	CTGCAG	1 cut(s)	465
BspPI	GGATC	1 cut(s)	316
BspQI	GCTCTTC	1 cut(s)	55
BspT107I	GGYRCC	3 cut(s)	230, 389, 624
BsrFI	RCCGGY	1 cut(s)	669
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	669
BssECI	CCNNGG	4 cut(s)	334, 415, 441, 512
BssMI	GATC	3 cut(s)	321, 395, 498
BssNI	GRCGYC	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	514
Bst6I	CTCTTC	4 cut(s)	55, 227, 350, 374
BstACI	GRCGYC	1 cut(s)	390
BstC8I	GCNNGC	3 cut(s)	161, 173, 671
BstDEI	CTNAG	2 cut(s)	55, 492
BstDSI	CCRYGG	2 cut(s)	415, 441
BstF5I	GGATG	2 cut(s)	83, 210
BstFNI	CGCG	3 cut(s)	13, 400, 616
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	6 cut(s)	6, 15, 48, 392, 402, 616
BstKTI	GATC	3 cut(s)	324, 398, 501
BstMAI	GTCTC	2 cut(s)	557, 705
BstMBI	GATC	3 cut(s)	321, 395, 498
BstMCI	CGRYCG	2 cut(s)	398, 412
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 12, 420, 426
BstNI	CCWGG	1 cut(s)	514
BstSCI	CCNGG	2 cut(s)	485, 512
BstSFI	CTRYAG	1 cut(s)	461
BstSLI	GKGCMC	1 cut(s)	629
BstUI	CGCG	3 cut(s)	13, 400, 616
BstV1I	GCAGC	5 cut(s)	156, 371, 407, 447, 469
BstXI	CCANNNNNNTGG	1 cut(s)	137
Bsu15I	ATCGAT	1 cut(s)	501
Bsu36I	CCTNAGG	1 cut(s)	55
BsuRI	GGCC	3 cut(s)	440, 591, 666
BsuTUI	ATCGAT	1 cut(s)	501
BtgI	CCRYGG	2 cut(s)	415, 441
BtrI	CACGTC	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	83, 210
Cac8I	GCNNGC	3 cut(s)	161, 173, 671
CfoI	GCGC	6 cut(s)	6, 15, 48, 392, 402, 616
Cfr10I	RCCGGY	1 cut(s)	669
Cfr13I	GGNCC	3 cut(s)	196, 558, 653
ClaI	ATCGAT	1 cut(s)	501
CpoI	CGGWCCG	1 cut(s)	558
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	693
CspI	CGGWCCG	1 cut(s)	558
CviAII	CATG	2 cut(s)	43, 442
CviQI	GTAC	1 cut(s)	693
DdeI	CTNAG	2 cut(s)	55, 492
DinI	GGCGCC	1 cut(s)	391
DpnI	GATC	3 cut(s)	323, 397, 500
DpnII	GATC	3 cut(s)	321, 395, 498
EaeI	YGGCCR	1 cut(s)	589
Eam1104I	CTCTTC	4 cut(s)	55, 227, 350, 374
EarI	CTCTTC	4 cut(s)	55, 227, 350, 374
EciI	GGCGGA	1 cut(s)	286
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	441
Eco24I	GRGCYC	1 cut(s)	567
Eco47I	GGWCC	3 cut(s)	196, 558, 653
Eco53kI	GAGCTC	1 cut(s)	565
Eco81I	CCTNAGG	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	565
EcoO109I	RGGNCCY	1 cut(s)	653
EcoRI	GAATTC	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	512
EcoT14I	CCWWGG	1 cut(s)	441
EcoT38I	GRGCYC	1 cut(s)	567
EgeI	GGCGCC	1 cut(s)	391
EheI	GGCGCC	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	2 cut(s)	46, 445
FaiI	YATR	3 cut(s)	44, 443, 675
FaqI	GGGAC	2 cut(s)	82, 639
FatI	CATG	2 cut(s)	42, 441
FauI	CCCGC	2 cut(s)	309, 515
Fnu4HI	GCNGC	9 cut(s)	142, 145, 360, 385, 388, 421, 458, 461, 667
FokI	GGATG	2 cut(s)	70, 197
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	9 cut(s)	142, 145, 360, 385, 388, 421, 458, 461, 667
FspBI	CTAG	1 cut(s)	690
GlaI	GCGC	6 cut(s)	5, 14, 47, 391, 401, 615
GluI	GCNGC	9 cut(s)	142, 145, 360, 385, 388, 421, 458, 461, 667
GsaI	CCCAGC	1 cut(s)	652
GsuI	CTGGAG	1 cut(s)	293
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	3 cut(s)	440, 591, 666
HapII	CCGG	5 cut(s)	228, 486, 556, 568, 670
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	6 cut(s)	6, 15, 48, 392, 402, 616
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	2 cut(s)	46, 445
Hin6I	GCGC	6 cut(s)	4, 13, 46, 390, 400, 614
HinP1I	GCGC	6 cut(s)	4, 13, 46, 390, 400, 614
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	3 cut(s)	190, 530, 697
HpaII	CCGG	5 cut(s)	228, 486, 556, 568, 670
HphI	GGTGA	2 cut(s)	64, 235
Hpy188I	TCNGA	1 cut(s)	562
Hpy188III	TCNNGA	5 cut(s)	194, 319, 481, 539, 568
Hpy99I	CGWCG	4 cut(s)	187, 359, 377, 635
HpyAV	CCTTC	6 cut(s)	79, 244, 430, 511, 638, 673
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	5 cut(s)	159, 171, 423, 457, 463
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 12, 420, 426
HpyF3I	CTNAG	2 cut(s)	55, 492
HpySE526I	ACGT	1 cut(s)	80
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	2 cut(s)	46, 445
HspAI	GCGC	6 cut(s)	4, 13, 46, 390, 400, 614
KasI	GGCGCC	1 cut(s)	389
KflI	GGGWCCC	1 cut(s)	653
Kpn2I	TCCGGA	1 cut(s)	567
KroI	GCCGGC	1 cut(s)	669
KroNI	GCCGGC	1 cut(s)	671
Kzo9I	GATC	3 cut(s)	321, 395, 498
LguI	GCTCTTC	1 cut(s)	55
LmnI	GCTCC	4 cut(s)	65, 168, 570, 583
Lsp1109I	GCAGC	5 cut(s)	156, 371, 407, 447, 469
MaeI	CTAG	1 cut(s)	690
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	527
MalI	GATC	3 cut(s)	323, 397, 500
MboI	GATC	3 cut(s)	321, 395, 498
MboII	GAAGA	9 cut(s)	42, 214, 256, 337, 340, 343, 361, 445, 583
MhlI	GDGCHC	2 cut(s)	567, 629
MluCI	AATT	2 cut(s)	154, 446
Mly113I	GGCGCC	1 cut(s)	390
MlyI	GAGTC	2 cut(s)	184, 524
MroI	TCCGGA	1 cut(s)	567
MroNI	GCCGGC	1 cut(s)	669
MslI	CAYNNNNRTG	2 cut(s)	41, 135
MspA1I	CMGCKG	1 cut(s)	460
MspI	CCGG	5 cut(s)	228, 486, 556, 568, 670
MspR9I	CCNGG	2 cut(s)	487, 514
MvaI	CCWGG	1 cut(s)	514
MvnI	CGCG	3 cut(s)	13, 400, 616
MwoI	GCNNNNNNNGC	4 cut(s)	10, 12, 420, 426
NaeI	GCCGGC	1 cut(s)	671
NarI	GGCGCC	1 cut(s)	390
NciI	CCSGG	1 cut(s)	487
NcoI	CCATGG	1 cut(s)	441
NdeII	GATC	3 cut(s)	321, 395, 498
NgoMIV	GCCGGC	1 cut(s)	669
NlaIII	CATG	2 cut(s)	46, 445
NlaIV	GGNNCC	7 cut(s)	61, 232, 391, 579, 626, 654, 655
NmeAIII	GCCGAG	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	527
PciSI	GCTCTTC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	185
PdiI	GCCGGC	1 cut(s)	671
PfeI	GAWTC	1 cut(s)	697
PflFI	GACNNNGTC	1 cut(s)	487
PkrI	GCNGC	9 cut(s)	143, 146, 361, 386, 389, 422, 459, 462, 668
Ple19I	CGATCG	1 cut(s)	398
PleI	GAGTC	2 cut(s)	184, 524
PluTI	GGCGCC	1 cut(s)	393
PpsI	GAGTC	2 cut(s)	184, 524
PpuMI	RGGWCCY	1 cut(s)	653
Psp124BI	GAGCTC	1 cut(s)	567
Psp5II	RGGWCCY	1 cut(s)	653
Psp6I	CCWGG	1 cut(s)	512
PspFI	CCCAGC	1 cut(s)	648
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	7 cut(s)	61, 232, 391, 579, 626, 654, 655
PspPI	GGNCC	3 cut(s)	196, 558, 653
PspPPI	RGGWCCY	1 cut(s)	653
PstI	CTGCAG	1 cut(s)	465
PsyI	GACNNNGTC	1 cut(s)	487
PvuI	CGATCG	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	460
RsaI	GTAC	1 cut(s)	694
RsaNI	GTAC	1 cut(s)	693
RseI	CAYNNNNRTG	2 cut(s)	41, 135
Rsr2I	CGGWCCG	1 cut(s)	558
RsrII	CGGWCCG	1 cut(s)	558
SacI	GAGCTC	1 cut(s)	567
SapI	GCTCTTC	1 cut(s)	55
SatI	GCNGC	9 cut(s)	142, 145, 360, 385, 388, 421, 458, 461, 667
Sau3AI	GATC	3 cut(s)	321, 395, 498
Sau96I	GGNCC	3 cut(s)	196, 558, 653
SchI	GAGTC	2 cut(s)	184, 524
ScrFI	CCNGG	2 cut(s)	487, 514
SduI	GDGCHC	2 cut(s)	567, 629
SetI	ASST	9 cut(s)	83, 201, 236, 248, 309, 333, 462, 567, 642
SfcI	CTRYAG	1 cut(s)	461
SfoI	GGCGCC	1 cut(s)	391
SinI	GGWCC	3 cut(s)	196, 558, 653
SmiMI	CAYNNNNRTG	2 cut(s)	41, 135
Sse9I	AATT	2 cut(s)	154, 446
SspDI	GGCGCC	1 cut(s)	389
SspMI	CTAG	1 cut(s)	690
SstI	GAGCTC	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	485, 512
StyI	CCWWGG	1 cut(s)	441
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	3 cut(s)	375, 450, 501
TasI	AATT	2 cut(s)	154, 446
TauI	GCSGC	4 cut(s)	144, 362, 390, 669
TfiI	GAWTC	1 cut(s)	697
TseFI	GTSAC	1 cut(s)	527
TseI	GCWGC	5 cut(s)	144, 384, 420, 457, 460
Tsp45I	GTSAC	1 cut(s)	527
TspGWI	ACGGA	3 cut(s)	84, 482, 720
Tth111I	GACNNNGTC	1 cut(s)	487
VpaK11BI	GGWCC	3 cut(s)	196, 558, 653
XapI	RAATTY	1 cut(s)	446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XspI	CTAG	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.