Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Reverse (-)

48969492 .. 48971808

Gene Structure 2317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G033290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAATGATTTGGGGATTCAGGCGCCGAAGTCCAGTGGCAGCACGACATGTTCTTGGATCAGGGAGCCGCCTATGCAGCCCCGGCTAGCAGAACCTCAGCCATCGAAACTGGAACCAAGCTCTACATCTCTAATCCAGACTATGGCGTTTCCAACGAGGACATCAGGGAGCCTCCGCCATGTGATTTTGTTGTTCCTCCCGATCCCCTACCTCCTCGGCTTCCTCTTCTTCTTCTTTGCCGCCCTCATCTTCGTCGAGTTCTGCTGCAGTGCCCAATCGAGCAAGTGCGACCTCCACGACTGCAAGGGCTTGAAGAAGGCCATGGAATTCGATTTACAGCTGCAAACGGAGGAGTGTTGTCTCCGATCCGAGCTCTGGAAGATGGCTTCGCACAATGGATTTGCCGTCTTGATTTTTCGAGCGCGGTGTGGGTGCCCCATCGCCAAGCTTGAAGGTTGGGGTCCCAAGCGAGGCCAACAACTCCGTGACTATTCTGGTTTCCTGAGTGCTCTTTCTGGTGGAGGTTGGATGGGGAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

19.96

Weight (kDa)

8.77

Isoelectric Point (pI)

56.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	22, 432
AccB7I	CCANNNNNTGG	1 cut(s)	142
AccII	CGCG	1 cut(s)	424
AciI	CCGC	4 cut(s)	68, 175, 240, 424
AclWI	GGATC	3 cut(s)	65, 196, 360
AcsI	RAATTY	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	23
AfiI	CCNNNNNNNGG	3 cut(s)	142, 375, 470
AflIII	ACRYGT	1 cut(s)	47
AgsI	TTSAA	2 cut(s)	313, 452
AluBI	AGCT	4 cut(s)	120, 340, 373, 448
AluI	AGCT	4 cut(s)	120, 340, 373, 448
Alw21I	GWGCWC	2 cut(s)	375, 511
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	3 cut(s)	65, 196, 360
AoxI	GGCC	2 cut(s)	318, 472
ApeKI	GCWGC	4 cut(s)	39, 76, 264, 340
ApoI	RAATTY	1 cut(s)	326
AspLEI	GCGC	2 cut(s)	25, 424
AspS9I	GGNCC	1 cut(s)	461
AsuC2I	CCSGG	1 cut(s)	82
AsuNHI	GCTAGC	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	461
BaeGI	GKGCMC	2 cut(s)	274, 437
BanI	GGYRCC	2 cut(s)	22, 432
BanII	GRGCYC	1 cut(s)	375
Bbv12I	GWGCWC	2 cut(s)	375, 511
BbvCI	CCTCAGC	1 cut(s)	96
BbvI	GCAGC	4 cut(s)	51, 88, 251, 327
BccI	CCATC	4 cut(s)	109, 376, 446, 523
BceAI	ACGGC	1 cut(s)	389
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	265
BfoI	RGCGCY	1 cut(s)	26
BisI	GCNGC	6 cut(s)	40, 68, 77, 240, 265, 341
BlsI	GCNGC	6 cut(s)	41, 69, 78, 241, 266, 342
Bme1390I	CCNGG	1 cut(s)	82
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	461
BmiI	GGNNCC	7 cut(s)	24, 66, 114, 170, 434, 462, 463
BmrFI	CCNGG	1 cut(s)	82
BmtI	GCTAGC	1 cut(s)	89
Bpu10I	CCTNAGC	1 cut(s)	96
BpuMI	CCSGG	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	80, 214, 321
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 375, 470
Bse1I	ACTGG	2 cut(s)	33, 114
BseDI	CCNNGG	3 cut(s)	80, 214, 321
BseGI	GGATG	1 cut(s)	534
BseLI	CCNNNNNNNGG	3 cut(s)	142, 375, 470
BseMII	CTCAG	2 cut(s)	110, 494
BseNI	ACTGG	2 cut(s)	33, 114
BseRI	GAGGAG	2 cut(s)	203, 365
BseSI	GKGCMC	2 cut(s)	274, 437
BseXI	GCAGC	4 cut(s)	51, 88, 251, 327
Bsh1236I	CGCG	1 cut(s)	424
BshFI	GGCC	2 cut(s)	320, 474
BshNI	GGYRCC	2 cut(s)	22, 432
BsiHKAI	GWGCWC	2 cut(s)	375, 511
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	3 cut(s)	142, 375, 470
BsmAI	GTCTC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	447
BsnI	GGCC	2 cut(s)	320, 474
Bsp1286I	GDGCHC	4 cut(s)	274, 375, 437, 511
Bsp143I	GATC	3 cut(s)	57, 201, 365
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	4 cut(s)	68, 175, 240, 424
BspANI	GGCC	2 cut(s)	320, 474
BspCNI	CTCAG	2 cut(s)	109, 495
BspFNI	CGCG	1 cut(s)	424
BspLI	GGNNCC	7 cut(s)	24, 66, 114, 170, 434, 462, 463
BspMAI	CTGCAG	1 cut(s)	269
BspOI	GCTAGC	1 cut(s)	89
BspPI	GGATC	3 cut(s)	65, 196, 360
BspT107I	GGYRCC	2 cut(s)	22, 432
BsrI	ACTGG	2 cut(s)	33, 114
BssECI	CCNNGG	3 cut(s)	80, 214, 321
BssMI	GATC	3 cut(s)	57, 201, 365
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	321
Bst6I	CTCTTC	1 cut(s)	230
BstACI	GRCGYC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	96, 503
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	534
BstFNI	CGCG	1 cut(s)	424
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	2 cut(s)	25, 424
BstKTI	GATC	3 cut(s)	60, 204, 368
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	3 cut(s)	57, 201, 365
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 76, 82
BstNSI	RCATGY	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	80
BstSFI	CTRYAG	1 cut(s)	265
BstSLI	GKGCMC	2 cut(s)	274, 437
BstUI	CGCG	1 cut(s)	424
BstV1I	GCAGC	4 cut(s)	51, 88, 251, 327
BsuRI	GGCC	2 cut(s)	320, 474
BtgI	CCRYGG	1 cut(s)	321
BtgZI	GCGATG	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	534
BtsI	GCAGTG	1 cut(s)	274
BtsIMutI	CAGTG	2 cut(s)	40, 274
Cac8I	GCNNGC	1 cut(s)	87
CfoI	GCGC	2 cut(s)	25, 424
Cfr13I	GGNCC	1 cut(s)	461
CviAII	CATG	3 cut(s)	48, 179, 322
DdeI	CTNAG	2 cut(s)	96, 503
DinI	GGCGCC	1 cut(s)	24
DpnI	GATC	3 cut(s)	59, 203, 367
DpnII	GATC	3 cut(s)	57, 201, 365
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
EciI	GGCGGA	1 cut(s)	164
Ecl136II	GAGCTC	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	461
Eco53kI	GAGCTC	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	373
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRI	GAATTC	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	375
EgeI	GGCGCC	1 cut(s)	24
EheI	GGCGCC	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	3 cut(s)	51, 182, 325
FaiI	YATR	6 cut(s)	49, 74, 143, 180, 323, 541
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	3 cut(s)	47, 178, 321
Fnu4HI	GCNGC	6 cut(s)	40, 68, 77, 240, 265, 341
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	6 cut(s)	40, 68, 77, 240, 265, 341
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	2 cut(s)	24, 423
GluI	GCNGC	6 cut(s)	40, 68, 77, 240, 265, 341
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	320, 474
HapII	CCGG	1 cut(s)	82
HhaI	GCGC	2 cut(s)	25, 424
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	3 cut(s)	51, 182, 325
Hin6I	GCGC	2 cut(s)	23, 422
HinP1I	GCGC	2 cut(s)	23, 422
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	365, 370
Hpy188III	TCNNGA	5 cut(s)	136, 199, 376, 409, 502
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	2 cut(s)	310, 446
HpyCH4V	TGCA	4 cut(s)	76, 267, 303, 343
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 76, 82
HpyF3I	CTNAG	2 cut(s)	96, 503
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	51, 182, 325
HspAI	GCGC	2 cut(s)	23, 422
KasI	GGCGCC	1 cut(s)	22
KflI	GGGWCCC	1 cut(s)	461
Kzo9I	GATC	3 cut(s)	57, 201, 365
LmnI	GCTCC	2 cut(s)	64, 168
Lsp1109I	GCAGC	4 cut(s)	51, 88, 251, 327
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	3 cut(s)	59, 203, 367
MboI	GATC	3 cut(s)	57, 201, 365
MboII	GAAGA	6 cut(s)	217, 220, 223, 241, 325, 391
MhlI	GDGCHC	4 cut(s)	274, 375, 437, 511
MluCI	AATT	1 cut(s)	326
Mly113I	GGCGCC	1 cut(s)	23
MmeI	TCCRAC	2 cut(s)	176, 506
MspA1I	CMGCKG	1 cut(s)	340
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	82
MvnI	CGCG	1 cut(s)	424
MwoI	GCNNNNNNNGC	3 cut(s)	73, 76, 82
NarI	GGCGCC	1 cut(s)	23
NciI	CCSGG	1 cut(s)	82
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	3 cut(s)	57, 201, 365
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	3 cut(s)	51, 182, 325
NlaIV	GGNNCC	7 cut(s)	24, 66, 114, 170, 434, 462, 463
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	485
NspI	RCATGY	1 cut(s)	51
PciI	ACATGT	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	16
PflMI	CCANNNNNTGG	1 cut(s)	142
PkrI	GCNGC	6 cut(s)	41, 69, 78, 241, 266, 342
PluTI	GGCGCC	1 cut(s)	26
PpuMI	RGGWCCY	1 cut(s)	461
PscI	ACATGT	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	461
PspN4I	GGNNCC	7 cut(s)	24, 66, 114, 170, 434, 462, 463
PspPI	GGNCC	1 cut(s)	461
PspPPI	RGGWCCY	1 cut(s)	461
PstI	CTGCAG	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	340
SacI	GAGCTC	1 cut(s)	375
SatI	GCNGC	6 cut(s)	40, 68, 77, 240, 265, 341
Sau3AI	GATC	3 cut(s)	57, 201, 365
Sau96I	GGNCC	1 cut(s)	461
ScrFI	CCNGG	1 cut(s)	82
SduI	GDGCHC	4 cut(s)	274, 375, 437, 511
SetI	ASST	9 cut(s)	97, 122, 213, 294, 342, 375, 450, 457, 526
SfcI	CTRYAG	1 cut(s)	265
SfoI	GGCGCC	1 cut(s)	24
SinI	GGWCC	1 cut(s)	461
Sse9I	AATT	1 cut(s)	326
SsiI	CCGC	4 cut(s)	68, 175, 240, 424
SspDI	GGCGCC	1 cut(s)	22
SspMI	CTAG	1 cut(s)	86
SstI	GAGCTC	1 cut(s)	375
StyD4I	CCNGG	1 cut(s)	80
StyI	CCWWGG	1 cut(s)	321
TaqI	TCGA	5 cut(s)	104, 255, 278, 330, 418
TasI	AATT	1 cut(s)	326
TauI	GCSGC	2 cut(s)	70, 242
TfiI	GAWTC	1 cut(s)	16
TscAI	CASTG	2 cut(s)	40, 274
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	4 cut(s)	39, 76, 264, 340
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	362, 473
TspRI	CASTG	2 cut(s)	40, 274
Van91I	CCANNNNNTGG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	1 cut(s)	326
XceI	RCATGY	1 cut(s)	51
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.