Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Reverse (-)

15249089 .. 15251983

Gene Structure 2895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1182400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCGCCATTTTCTGTTCGCCACCACCACTATCATGCCCTCCTCATCCTCCTCCTTCTCAGCCGCTGCCACGTCATCCTCCTCCTTCTCCCCAACCCCCAAACCCAAATCCTCAAACCCTAACTCTAACTCAAACCCTAATTGCACCCTCCTCTGCAAGCACTCGCCCTCGGCGACCCTCGACCTCCTTATCCTCATCCTCGTCCTCTTCTCCGGGACCTTCCTCATCACCTCCTACTTCGCCTACATCTTCAACTCCCTCTCGCTTCTCCTCTCTCACTCCACCCTCCACCTCCTCCTCCACCACATTCCCGTCCCCTACGTCGTCGGCTTCGTCGCCTTCTTCGCCGCCGCGCTGTTCGTAGTCGAGTTCTGCTGCGGCATTCGATCGAGGAAGTGCGATAGGCCTGGGTGCAAGGGCTTAAAGAAGGCTATGGAATTCGATTTGCAACTGCAATCGGAGGAGTGTGTCAAGTCCGGGTCTAAAGATATCGATAGGCTGCCGTGGAAGGGCGGCAGCGAGGGCAATCCCGATTACGAGTGTCTCAGGACTGAGCTGAGGCGGATGGCGCCGACCAATGGCCGTGCCGTTCTGCTGTTTCGGGCTCGATGCGGATGCCCGGTGGCCAAGCTCGCAGGCTGGGGTCCCAAGAGAAAACGTCGGCATAAGAAGGCTCTGGCCAGTACGGCTCTTAATGGAGGAGATCATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

25.96

Weight (kDa)

9.72

Isoelectric Point (pI)

56.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	568
AccII	CGCG	1 cut(s)	353
AciI	CCGC	7 cut(s)	63, 348, 351, 378, 513, 562, 612
AcoI	YGGCCR	3 cut(s)	580, 624, 678
AcsI	RAATTY	1 cut(s)	437
AcyI	GRCGYC	1 cut(s)	569
AfaI	GTAC	1 cut(s)	685
AfiI	CCNNNNNNNGG	2 cut(s)	509, 578
AgsI	TTSAA	1 cut(s)	253
AjiI	CACGTC	1 cut(s)	72
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	2 cut(s)	556, 631
AluI	AGCT	2 cut(s)	556, 631
Alw26I	GTCTC	1 cut(s)	548
AlwNI	CAGNNNCTG	1 cut(s)	65
AoxI	GGCC	4 cut(s)	404, 580, 624, 678
ApeKI	GCWGC	4 cut(s)	65, 375, 499, 516
ApoI	RAATTY	1 cut(s)	437
AspLEI	GCGC	3 cut(s)	6, 355, 571
AspS9I	GGNCC	2 cut(s)	216, 644
AsuC2I	CCSGG	3 cut(s)	214, 478, 620
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	2 cut(s)	216, 644
BalI	TGGCCA	2 cut(s)	626, 680
BanI	GGYRCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	607
BbvCI	CCTCAGC	1 cut(s)	557
BbvI	GCAGC	4 cut(s)	52, 362, 486, 528
BccI	CCATC	1 cut(s)	559
BceAI	ACGGC	4 cut(s)	487, 567, 572, 702
BcgI	CGANNNNNNTGC	2 cut(s)	597, 631
BciT130I	CCWGG	1 cut(s)	408
BcnI	CCSGG	3 cut(s)	214, 478, 620
BcoDI	GTCTC	1 cut(s)	548
BfoI	RGCGCY	1 cut(s)	572
BglI	GCCNNNNNGGC	1 cut(s)	686
BisI	GCNGC	9 cut(s)	63, 66, 348, 351, 376, 379, 500, 514, 517
BlsI	GCNGC	9 cut(s)	64, 67, 349, 352, 377, 380, 501, 515, 518
Bme1390I	CCNGG	4 cut(s)	214, 408, 478, 620
Bme18I	GGWCC	2 cut(s)	216, 644
BmgBI	CACGTC	1 cut(s)	72
BmgT120I	GGNCC	2 cut(s)	216, 644
BmiI	GGNNCC	4 cut(s)	217, 570, 645, 646
BmrFI	CCNGG	4 cut(s)	214, 408, 478, 620
BmsI	GCATC	2 cut(s)	599, 605
Bpu10I	CCTNAGC	1 cut(s)	557
BpuMI	CCSGG	3 cut(s)	214, 478, 620
Bsa29I	ATCGAT	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	569
BsaJI	CCNNGG	3 cut(s)	168, 407, 503
Bsc4I	CCNNNNNNNGG	2 cut(s)	509, 578
Bse1I	ACTGG	1 cut(s)	681
BseBI	CCWGG	1 cut(s)	408
BseCI	ATCGAT	1 cut(s)	492
BseDI	CCNNGG	3 cut(s)	168, 407, 503
BseGI	GGATG	5 cut(s)	44, 74, 195, 570, 620
BseLI	CCNNNNNNNGG	2 cut(s)	509, 578
BseMII	CTCAG	4 cut(s)	72, 543, 548, 559
BseNI	ACTGG	1 cut(s)	681
BseRI	GAGGAG	9 cut(s)	31, 40, 70, 140, 260, 284, 287, 476, 714
BseXI	GCAGC	4 cut(s)	52, 362, 486, 528
BseYI	CCCAGC	1 cut(s)	639
Bsh1236I	CGCG	1 cut(s)	353
Bsh1285I	CGRYCG	1 cut(s)	389
BshFI	GGCC	4 cut(s)	406, 582, 626, 680
BshNI	GGYRCC	1 cut(s)	568
BshVI	ATCGAT	1 cut(s)	492
BsiEI	CGRYCG	1 cut(s)	389
BsiSI	CCGG	3 cut(s)	213, 477, 620
BslFI	GGGAC	3 cut(s)	229, 299, 630
BslI	CCNNNNNNNGG	2 cut(s)	509, 578
BsmAI	GTCTC	1 cut(s)	548
BsmFI	GGGAC	3 cut(s)	229, 299, 630
BsmI	GAATGC	1 cut(s)	381
BsnI	GGCC	4 cut(s)	406, 582, 626, 680
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp143I	GATC	2 cut(s)	386, 703
BspACI	CCGC	7 cut(s)	63, 348, 351, 378, 513, 562, 612
BspANI	GGCC	4 cut(s)	406, 582, 626, 680
BspCNI	CTCAG	4 cut(s)	71, 544, 549, 558
BspDI	ATCGAT	1 cut(s)	492
BspFNI	CGCG	1 cut(s)	353
BspLI	GGNNCC	4 cut(s)	217, 570, 645, 646
BspT107I	GGYRCC	1 cut(s)	568
BsrI	ACTGG	1 cut(s)	681
BssECI	CCNNGG	3 cut(s)	168, 407, 503
BssMI	GATC	2 cut(s)	386, 703
BssNI	GRCGYC	1 cut(s)	569
Bst2UI	CCWGG	1 cut(s)	408
Bst6I	CTCTTC	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	569
BstC8I	GCNNGC	3 cut(s)	158, 633, 637
BstDEI	CTNAG	4 cut(s)	58, 545, 552, 557
BstDSI	CCRYGG	1 cut(s)	503
BstF5I	GGATG	5 cut(s)	44, 74, 195, 570, 620
BstFNI	CGCG	1 cut(s)	353
BstH2I	RGCGCY	1 cut(s)	572
BstHHI	GCGC	3 cut(s)	6, 355, 571
BstKTI	GATC	2 cut(s)	389, 706
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	2 cut(s)	386, 703
BstMCI	CGRYCG	1 cut(s)	389
BstMWI	GCNNNNNNNGC	5 cut(s)	344, 522, 568, 632, 686
BstNI	CCWGG	1 cut(s)	408
BstSCI	CCNGG	4 cut(s)	212, 406, 476, 618
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	4 cut(s)	52, 362, 486, 528
Bsu15I	ATCGAT	1 cut(s)	492
BsuRI	GGCC	4 cut(s)	406, 582, 626, 680
BsuTUI	ATCGAT	1 cut(s)	492
BtgI	CCRYGG	1 cut(s)	503
BtgZI	GCGATG	1 cut(s)	692
BtrI	CACGTC	1 cut(s)	72
BtsCI	GGATG	5 cut(s)	44, 74, 195, 570, 620
Cac8I	GCNNGC	3 cut(s)	158, 633, 637
CaiI	CAGNNNCTG	1 cut(s)	65
CfoI	GCGC	3 cut(s)	6, 355, 571
Cfr13I	GGNCC	2 cut(s)	216, 644
ClaI	ATCGAT	1 cut(s)	492
Csp6I	GTAC	1 cut(s)	684
CviAII	CATG	1 cut(s)	34
CviQI	GTAC	1 cut(s)	684
DdeI	CTNAG	4 cut(s)	58, 545, 552, 557
DinI	GGCGCC	1 cut(s)	570
DpnI	GATC	2 cut(s)	388, 705
DpnII	GATC	2 cut(s)	386, 703
EaeI	YGGCCR	3 cut(s)	580, 624, 678
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
EciI	GGCGGA	1 cut(s)	577
Eco147I	AGGCCT	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	607
Eco32I	GATATC	1 cut(s)	490
Eco47I	GGWCC	2 cut(s)	216, 644
EcoO109I	RGGNCCY	2 cut(s)	216, 644
EcoRI	GAATTC	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	406
EcoRV	GATATC	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	607
EgeI	GGCGCC	1 cut(s)	570
EheI	GGCGCC	1 cut(s)	570
FaeI	CATG	1 cut(s)	37
FaiI	YATR	3 cut(s)	35, 434, 666
FaqI	GGGAC	3 cut(s)	229, 299, 630
FatI	CATG	1 cut(s)	33
Fnu4HI	GCNGC	9 cut(s)	63, 66, 348, 351, 376, 379, 500, 514, 517
FokI	GGATG	5 cut(s)	31, 61, 182, 577, 627
FriOI	GRGCYC	1 cut(s)	607
Fsp4HI	GCNGC	9 cut(s)	63, 66, 348, 351, 376, 379, 500, 514, 517
GlaI	GCGC	3 cut(s)	5, 354, 570
GluI	GCNGC	9 cut(s)	63, 66, 348, 351, 376, 379, 500, 514, 517
GsaI	CCCAGC	1 cut(s)	643
HaeII	RGCGCY	1 cut(s)	572
HaeIII	GGCC	4 cut(s)	406, 582, 626, 680
HapII	CCGG	3 cut(s)	213, 477, 620
HhaI	GCGC	3 cut(s)	6, 355, 571
Hin1I	GRCGYC	1 cut(s)	569
Hin1II	CATG	1 cut(s)	37
Hin6I	GCGC	3 cut(s)	4, 353, 569
HinP1I	GCGC	3 cut(s)	4, 353, 569
HpaII	CCGG	3 cut(s)	213, 477, 620
HphI	GGTGA	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	460
Hpy188III	TCNNGA	2 cut(s)	530, 547
Hpy99I	CGWCG	4 cut(s)	326, 329, 338, 663
HpyAV	CCTTC	7 cut(s)	64, 94, 229, 349, 421, 502, 664
HpyCH4IV	ACGT	3 cut(s)	71, 321, 658
HpyCH4V	TGCA	5 cut(s)	144, 156, 414, 448, 454
HpyF10VI	GCNNNNNNNGC	5 cut(s)	344, 522, 568, 632, 686
HpyF3I	CTNAG	4 cut(s)	58, 545, 552, 557
HpySE526I	ACGT	3 cut(s)	71, 321, 658
Hsp92I	GRCGYC	1 cut(s)	569
Hsp92II	CATG	1 cut(s)	37
HspAI	GCGC	3 cut(s)	4, 353, 569
KasI	GGCGCC	1 cut(s)	568
KflI	GGGWCCC	1 cut(s)	644
Kzo9I	GATC	2 cut(s)	386, 703
Lsp1109I	GCAGC	4 cut(s)	52, 362, 486, 528
LweI	GCATC	2 cut(s)	599, 605
MaeII	ACGT	3 cut(s)	71, 321, 658
MalI	GATC	2 cut(s)	388, 705
MboI	GATC	2 cut(s)	386, 703
MboII	GAAGA	3 cut(s)	199, 241, 334
MhlI	GDGCHC	1 cut(s)	607
MlsI	TGGCCA	2 cut(s)	626, 680
MluCI	AATT	2 cut(s)	139, 437
MluNI	TGGCCA	2 cut(s)	626, 680
Mly113I	GGCGCC	1 cut(s)	569
Mox20I	TGGCCA	2 cut(s)	626, 680
MscI	TGGCCA	2 cut(s)	626, 680
MseI	TTAA	2 cut(s)	422, 693
MslI	CAYNNNNRTG	1 cut(s)	32
Msp20I	TGGCCA	2 cut(s)	626, 680
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	3 cut(s)	213, 477, 620
MspR9I	CCNGG	4 cut(s)	214, 408, 478, 620
Mva1269I	GAATGC	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	5 cut(s)	344, 522, 568, 632, 686
NarI	GGCGCC	1 cut(s)	569
NciI	CCSGG	3 cut(s)	214, 478, 620
NdeII	GATC	2 cut(s)	386, 703
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	4 cut(s)	217, 570, 645, 646
NmeAIII	GCCGAG	1 cut(s)	149
PceI	AGGCCT	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	2 cut(s)	170, 330
PctI	GAATGC	1 cut(s)	381
PfoI	TCCNGGA	1 cut(s)	212
PkrI	GCNGC	9 cut(s)	64, 67, 349, 352, 377, 380, 501, 515, 518
Ple19I	CGATCG	1 cut(s)	389
PluTI	GGCGCC	1 cut(s)	572
PpuMI	RGGWCCY	2 cut(s)	216, 644
Psp5II	RGGWCCY	2 cut(s)	216, 644
Psp6I	CCWGG	1 cut(s)	406
PspFI	CCCAGC	1 cut(s)	639
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	4 cut(s)	217, 570, 645, 646
PspPI	GGNCC	2 cut(s)	216, 644
PspPPI	RGGWCCY	2 cut(s)	216, 644
PstNI	CAGNNNCTG	1 cut(s)	65
PvuI	CGATCG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	685
RsaNI	GTAC	1 cut(s)	684
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	422, 693
SatI	GCNGC	9 cut(s)	63, 66, 348, 351, 376, 379, 500, 514, 517
Sau3AI	GATC	2 cut(s)	386, 703
Sau96I	GGNCC	2 cut(s)	216, 644
ScrFI	CCNGG	4 cut(s)	214, 408, 478, 620
SduI	GDGCHC	1 cut(s)	607
SetI	ASST	9 cut(s)	74, 186, 221, 233, 294, 324, 558, 633, 661
SfaNI	GCATC	2 cut(s)	599, 605
SfoI	GGCGCC	1 cut(s)	570
SinI	GGWCC	2 cut(s)	216, 644
SmiMI	CAYNNNNRTG	1 cut(s)	32
Sse9I	AATT	2 cut(s)	139, 437
SseBI	AGGCCT	1 cut(s)	406
SsiI	CCGC	7 cut(s)	63, 348, 351, 378, 513, 562, 612
SspDI	GGCGCC	1 cut(s)	568
StuI	AGGCCT	1 cut(s)	406
StyD4I	CCNGG	4 cut(s)	212, 406, 476, 618
TaiI	ACGT	3 cut(s)	74, 324, 661
TaqI	TCGA	7 cut(s)	180, 366, 385, 389, 441, 492, 607
TasI	AATT	2 cut(s)	139, 437
TauI	GCSGC	5 cut(s)	65, 350, 353, 381, 516
Tru1I	TTAA	2 cut(s)	422, 693
Tru9I	TTAA	2 cut(s)	422, 693
TseI	GCWGC	4 cut(s)	65, 375, 499, 516
VpaK11BI	GGWCC	2 cut(s)	216, 644
XapI	RAATTY	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.