Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Reverse (-)

40742857 .. 40743279

Gene Structure 423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38609

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCGTTTCCAACGAGGACATCAGGGAGCCTCCGCCATGTGATTTTGTTGTTCCTCCCGATCCCCTACCTCCTCGGCTTCCTCTTCTTCTTCGTTGTCGCCCTCATCTTCATTGAGTTCTGCTGTGGCACCCGATCACGCAAGTGCGACTGCCACGGTTGCAAGGGCTTGAAGAAGGCCATGGAATTCGATTTGCAGCTGCAGACGAAGGAGTGTGTCAAGACCGGGTCTAAGAAGATCGATAAGTTGCCCTTGAAGGGCGGGAGTGACGCCAATCCCGATTACGAGTGTCTCCAGTCCGAGCTCCGAAAGATGGCTCTGCCCAATGGCTTTGCCGTCTTGCTTTTTAGGGCACGGTGTGGGTGCCCCGTTGCCAAGCTTGAAGGCTGGGGTCCCAAGCGAGGTCGTCGGCATAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.76

Weight (kDa)

9.68

Isoelectric Point (pI)

58.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	128, 363
AciI	CCGC	2 cut(s)	34, 261
AclWI	GGATC	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	270
AdeI	CACNNNGTG	1 cut(s)	359
AfiI	CCNNNNNNNGG	3 cut(s)	257, 313, 401
AgsI	TTSAA	3 cut(s)	172, 256, 383
AleI	CACNNNNGTG	1 cut(s)	142
AluBI	AGCT	3 cut(s)	199, 304, 379
AluI	AGCT	3 cut(s)	199, 304, 379
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	1 cut(s)	55
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	196, 199
ApoI	RAATTY	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	392
AsuC2I	CCSGG	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	392
BaeGI	GKGCMC	2 cut(s)	355, 368
BanI	GGYRCC	2 cut(s)	128, 363
BanII	GRGCYC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	186, 208
BccI	CCATC	1 cut(s)	307
BceAI	ACGGC	1 cut(s)	320
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	200
BisI	GCNGC	2 cut(s)	197, 200
BlsI	GCNGC	2 cut(s)	198, 201
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	5 cut(s)	29, 130, 365, 393, 394
BmrFI	CCNGG	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	226
Bsa29I	ATCGAT	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	3 cut(s)	73, 154, 180
Bsc4I	CCNNNNNNNGG	3 cut(s)	257, 313, 401
Bse1I	ACTGG	1 cut(s)	295
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	3 cut(s)	73, 154, 180
BseLI	CCNNNNNNNGG	3 cut(s)	257, 313, 401
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	62
BseSI	GKGCMC	2 cut(s)	355, 368
BseXI	GCAGC	2 cut(s)	186, 208
BseYI	CCCAGC	1 cut(s)	387
BshFI	GGCC	1 cut(s)	179
BshNI	GGYRCC	2 cut(s)	128, 363
BshVI	ATCGAT	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	3 cut(s)	257, 313, 401
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	1 cut(s)	179
Bsp1286I	GDGCHC	3 cut(s)	306, 355, 368
Bsp143I	GATC	3 cut(s)	60, 134, 237
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	2 cut(s)	34, 261
BspANI	GGCC	1 cut(s)	179
BspDI	ATCGAT	1 cut(s)	240
BspLI	GGNNCC	5 cut(s)	29, 130, 365, 393, 394
BspMAI	CTGCAG	1 cut(s)	204
BspPI	GGATC	1 cut(s)	55
BspT107I	GGYRCC	2 cut(s)	128, 363
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	3 cut(s)	73, 154, 180
BssMI	GATC	3 cut(s)	60, 134, 237
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	158, 357
Bst6I	CTCTTC	1 cut(s)	89
BstACI	GRCGYC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	2 cut(s)	154, 180
BstKTI	GATC	3 cut(s)	63, 137, 240
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	3 cut(s)	60, 134, 237
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	200
BstSLI	GKGCMC	2 cut(s)	355, 368
BstV1I	GCAGC	2 cut(s)	186, 208
Bsu15I	ATCGAT	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	179
BsuTUI	ATCGAT	1 cut(s)	240
BtgI	CCRYGG	2 cut(s)	154, 180
Cfr13I	GGNCC	1 cut(s)	392
ClaI	ATCGAT	1 cut(s)	240
CseI	GACGC	1 cut(s)	278
CviAII	CATG	2 cut(s)	38, 181
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	3 cut(s)	62, 136, 239
DpnII	GATC	3 cut(s)	60, 134, 237
DraIII	CACNNNGTG	1 cut(s)	359
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	392
Eco53kI	GAGCTC	1 cut(s)	304
EcoICRI	GAGCTC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	392
EcoRI	GAATTC	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	2 cut(s)	41, 184
FaiI	YATR	3 cut(s)	39, 182, 414
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	2 cut(s)	37, 180
FauI	CCCGC	1 cut(s)	254
Fnu4HI	GCNGC	2 cut(s)	197, 200
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	2 cut(s)	197, 200
GluI	GCNGC	2 cut(s)	197, 200
GsaI	CCCAGC	1 cut(s)	391
GsuI	CTGGAG	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	225
HgaI	GACGC	1 cut(s)	278
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	2 cut(s)	41, 184
HindIII	AAGCTT	1 cut(s)	377
HpaII	CCGG	1 cut(s)	225
Hpy188I	TCNGA	2 cut(s)	301, 308
Hpy188III	TCNNGA	3 cut(s)	58, 220, 278
Hpy99I	CGWCG	1 cut(s)	411
HpyAV	CCTTC	4 cut(s)	169, 202, 250, 377
HpyCH4III	ACNGT	2 cut(s)	158, 357
HpyCH4V	TGCA	3 cut(s)	162, 196, 202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	1 cut(s)	231
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	41, 184
KflI	GGGWCCC	1 cut(s)	392
Kzo9I	GATC	3 cut(s)	60, 134, 237
LmnI	GCTCC	2 cut(s)	27, 309
LpnPI	CCDG	4 cut(s)	9, 238, 308, 373
Lsp1109I	GCAGC	2 cut(s)	186, 208
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	3 cut(s)	62, 136, 239
MboI	GATC	3 cut(s)	60, 134, 237
MboII	GAAGA	6 cut(s)	76, 79, 82, 100, 184, 247
MhlI	GDGCHC	3 cut(s)	306, 355, 368
MluCI	AATT	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	8 cut(s)	9, 41, 65, 80, 83, 92, 113, 395
MslI	CAYNNNNRTG	1 cut(s)	142
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	1 cut(s)	159
NciI	CCSGG	1 cut(s)	226
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	3 cut(s)	60, 134, 237
NlaIII	CATG	2 cut(s)	41, 184
NlaIV	GGNNCC	5 cut(s)	29, 130, 365, 393, 394
NmeAIII	GCCGAG	1 cut(s)	54
NmuCI	GTSAC	1 cut(s)	266
OliI	CACNNNNGTG	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PflFI	GACNNNGTC	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	198, 201
PpuMI	RGGWCCY	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	392
PspFI	CCCAGC	1 cut(s)	387
PspN4I	GGNNCC	5 cut(s)	29, 130, 365, 393, 394
PspPI	GGNCC	1 cut(s)	392
PspPPI	RGGWCCY	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	204
PsyI	GACNNNGTC	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	306
SatI	GCNGC	2 cut(s)	197, 200
Sau3AI	GATC	3 cut(s)	60, 134, 237
Sau96I	GGNCC	1 cut(s)	392
ScrFI	CCNGG	1 cut(s)	226
SduI	GDGCHC	3 cut(s)	306, 355, 368
SetI	ASST	5 cut(s)	72, 201, 306, 381, 406
SfcI	CTRYAG	1 cut(s)	200
SinI	GGWCC	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	142
Sse9I	AATT	1 cut(s)	185
SsiI	CCGC	2 cut(s)	34, 261
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	158, 357
TaqI	TCGA	2 cut(s)	189, 240
TasI	AATT	1 cut(s)	185
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	2 cut(s)	196, 199
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	1 cut(s)	100
Tth111I	GACNNNGTC	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.