Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Reverse (-)

18010472 .. 18014694

Gene Structure 4223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCGTCTCACGCACCCTCCTCCACTCGCCACCATGCGCTCCTCCTCCTCCACCGCCACGTCATCATCCTCCTCCTCCCCGAAACCCAAATCCTCAAACCCTAGCCACCACTCCAACGGCCACAACAGCCCCAATTGCACCCTCCTCTGCAAACACTCCCCCTCTGCGACTCTCGACCTCCTGATCCTCATCCTGGTCCTCTTCTCCGGCACCTTCCTCATCACCTCCTACTTCTCCTACATCTTCAACTCCCTCTCCCTCCTCCTCTCCCACTCCGCCCCTCACCTCCCGATCCCCTATCTCGCCGGCTTCCTCCTGTTCTTCGTCGCCGCGCTCCTCCTCGTCGAGTTCTGCTGCGGCAAGCGATCGCGCAAGTGCGACCGGGCCGGATGTAAGGGTCTGAAGAAGGCCATGGAATTCGATTTGCAGCTGCAGACGGAGGACTGTGTCAAGAGCGGGTCTAAGGAGATCGATAAGCTGCCGTGGAAGGGCGGCAGCGAGACTAATCCTGATTACGAGTGTTTAAGGTCCGAGCTCCGGAAGATGGCTCCGCCTAATGGCCGCGCCGTGTTGCTGTTTCGGGCGCGGTGTGGTTGCCCCGTCGCCAAGCTTGAAGGATGGGGTCCCAAGCGAGGCCGCCGGCATAAGAAGGCTCTGGCGAGTACGATTCCCAATGGTGGAGACAATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

25.11

Weight (kDa)

9.67

Isoelectric Point (pI)

57.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	209
AccBSI	CCGCTC	1 cut(s)	456
AccII	CGCG	4 cut(s)	332, 370, 564, 586
AccIII	TCCGGA	1 cut(s)	537
AclWI	GGATC	2 cut(s)	178, 286
AcoI	YGGCCR	2 cut(s)	118, 559
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	1 cut(s)	664
AfiI	CCNNNNNNNGG	7 cut(s)	193, 488, 537, 544, 557, 632, 677
AgsI	TTSAA	2 cut(s)	247, 614
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	4 cut(s)	430, 478, 535, 610
AluI	AGCT	4 cut(s)	430, 478, 535, 610
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	3 cut(s)	11, 494, 675
AlwI	GGATC	2 cut(s)	178, 286
Aor13HI	TCCGGA	1 cut(s)	537
AoxI	GGCC	5 cut(s)	118, 384, 408, 559, 634
ApeKI	GCWGC	5 cut(s)	354, 427, 430, 478, 495
ApoI	RAATTY	1 cut(s)	416
AsiSI	GCGATCGC	1 cut(s)	368
AspLEI	GCGC	5 cut(s)	39, 334, 372, 566, 586
AspS9I	GGNCC	4 cut(s)	196, 384, 528, 623
AsuC2I	CCSGG	1 cut(s)	383
AsuHPI	GGTGA	2 cut(s)	214, 275
AvaII	GGWCC	3 cut(s)	196, 528, 623
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	5 cut(s)	341, 417, 439, 465, 507
BccI	CCATC	2 cut(s)	538, 612
BceAI	ACGGC	3 cut(s)	133, 466, 551
BciT130I	CCWGG	1 cut(s)	194
BcnI	CCSGG	1 cut(s)	383
BcoDI	GTCTC	3 cut(s)	11, 494, 675
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	431
Bme1390I	CCNGG	2 cut(s)	194, 383
Bme18I	GGWCC	3 cut(s)	196, 528, 623
BmgBI	CACGTC	1 cut(s)	60
BmgT120I	GGNCC	4 cut(s)	196, 384, 528, 623
BmiI	GGNNCC	4 cut(s)	211, 549, 624, 625
BmrFI	CCNGG	2 cut(s)	194, 383
BpuMI	CCSGG	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	471
BsaBI	GATNNNNATC	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	411, 482
BsaWI	WCCGGW	1 cut(s)	537
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 239, 269
Bsc4I	CCNNNNNNNGG	7 cut(s)	193, 488, 537, 544, 557, 632, 677
Bse118I	RCCGGY	2 cut(s)	305, 639
Bse8I	GATNNNNATC	1 cut(s)	188
BseAI	TCCGGA	1 cut(s)	537
BseBI	CCWGG	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	471
BseDI	CCNNGG	2 cut(s)	411, 482
BseGI	GGATG	4 cut(s)	65, 189, 395, 623
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	7 cut(s)	193, 488, 537, 544, 557, 632, 677
BseXI	GCAGC	5 cut(s)	341, 417, 439, 465, 507
Bsh1236I	CGCG	4 cut(s)	332, 370, 564, 586
Bsh1285I	CGRYCG	2 cut(s)	368, 382
BshFI	GGCC	5 cut(s)	120, 386, 410, 561, 636
BshNI	GGYRCC	1 cut(s)	209
BshVI	ATCGAT	1 cut(s)	471
BsiEI	CGRYCG	2 cut(s)	368, 382
BsiHKAI	GWGCWC	1 cut(s)	537
BsiSI	CCGG	6 cut(s)	207, 306, 382, 387, 538, 640
BslFI	GGGAC	1 cut(s)	609
BslI	CCNNNNNNNGG	7 cut(s)	193, 488, 537, 544, 557, 632, 677
BsmAI	GTCTC	3 cut(s)	11, 494, 675
BsmBI	CGTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	609
BsnI	GGCC	5 cut(s)	120, 386, 410, 561, 636
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp13I	TCCGGA	1 cut(s)	537
Bsp143I	GATC	4 cut(s)	183, 291, 365, 468
Bsp19I	CCATGG	1 cut(s)	411
BspANI	GGCC	5 cut(s)	120, 386, 410, 561, 636
BspDI	ATCGAT	1 cut(s)	471
BspEI	TCCGGA	1 cut(s)	537
BspFNI	CGCG	4 cut(s)	332, 370, 564, 586
BspLI	GGNNCC	4 cut(s)	211, 549, 624, 625
BspMAI	CTGCAG	1 cut(s)	435
BspPI	GGATC	2 cut(s)	178, 286
BspT107I	GGYRCC	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	456
BsrFI	RCCGGY	2 cut(s)	305, 639
BssAI	RCCGGY	2 cut(s)	305, 639
BssECI	CCNNGG	2 cut(s)	411, 482
BssMI	GATC	4 cut(s)	183, 291, 365, 468
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	1 cut(s)	206
BstC8I	GCNNGC	3 cut(s)	307, 362, 641
BstDEI	CTNAG	1 cut(s)	462
BstDSI	CCRYGG	2 cut(s)	411, 482
BstF5I	GGATG	4 cut(s)	65, 189, 395, 623
BstFNI	CGCG	4 cut(s)	332, 370, 564, 586
BstHHI	GCGC	5 cut(s)	39, 334, 372, 566, 586
BstKTI	GATC	4 cut(s)	186, 294, 368, 471
BstMAI	GTCTC	3 cut(s)	11, 494, 675
BstMBI	GATC	4 cut(s)	183, 291, 365, 468
BstMCI	CGRYCG	2 cut(s)	368, 382
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 126, 135
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	2 cut(s)	192, 381
BstSFI	CTRYAG	1 cut(s)	431
BstUI	CGCG	4 cut(s)	332, 370, 564, 586
BstV1I	GCAGC	5 cut(s)	341, 417, 439, 465, 507
Bsu15I	ATCGAT	1 cut(s)	471
BsuRI	GGCC	5 cut(s)	120, 386, 410, 561, 636
BsuTUI	ATCGAT	1 cut(s)	471
BtgI	CCRYGG	2 cut(s)	411, 482
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	4 cut(s)	65, 189, 395, 623
Cac8I	GCNNGC	3 cut(s)	307, 362, 641
CfoI	GCGC	5 cut(s)	39, 334, 372, 566, 586
Cfr10I	RCCGGY	2 cut(s)	305, 639
Cfr13I	GGNCC	4 cut(s)	196, 384, 528, 623
ClaI	ATCGAT	1 cut(s)	471
Csp6I	GTAC	1 cut(s)	663
CviAII	CATG	2 cut(s)	34, 412
CviQI	GTAC	1 cut(s)	663
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	4 cut(s)	185, 293, 367, 470
DpnII	GATC	4 cut(s)	183, 291, 365, 468
EaeI	YGGCCR	2 cut(s)	118, 559
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
EciI	GGCGGA	2 cut(s)	265, 540
Ecl136II	GAGCTC	1 cut(s)	535
Eco130I	CCWWGG	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	537
Eco47I	GGWCC	3 cut(s)	196, 528, 623
Eco53kI	GAGCTC	1 cut(s)	535
Eco57I	CTGAAG	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	535
EcoO109I	RGGNCCY	1 cut(s)	623
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	411
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	2 cut(s)	37, 415
FaiI	YATR	3 cut(s)	35, 413, 645
FaqI	GGGAC	1 cut(s)	609
FatI	CATG	2 cut(s)	33, 411
FauI	CCCGC	1 cut(s)	449
FokI	GGATG	4 cut(s)	52, 176, 402, 630
FriOI	GRGCYC	1 cut(s)	537
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	5 cut(s)	38, 333, 371, 565, 585
HaeIII	GGCC	5 cut(s)	120, 386, 410, 561, 636
HapII	CCGG	6 cut(s)	207, 306, 382, 387, 538, 640
HhaI	GCGC	5 cut(s)	39, 334, 372, 566, 586
Hin1II	CATG	2 cut(s)	37, 415
Hin6I	GCGC	5 cut(s)	37, 332, 370, 564, 584
HinP1I	GCGC	5 cut(s)	37, 332, 370, 564, 584
HindIII	AAGCTT	1 cut(s)	608
HinfI	GANTC	2 cut(s)	169, 667
HpaII	CCGG	6 cut(s)	207, 306, 382, 387, 538, 640
HphI	GGTGA	2 cut(s)	214, 275
Hpy188I	TCNGA	2 cut(s)	402, 532
Hpy188III	TCNNGA	6 cut(s)	173, 181, 289, 451, 509, 538
Hpy99I	CGWCG	3 cut(s)	329, 347, 605
HpyAV	CCTTC	5 cut(s)	223, 400, 481, 608, 643
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	4 cut(s)	138, 150, 427, 433
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 126, 135
HpyF3I	CTNAG	1 cut(s)	462
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	37, 415
HspAI	GCGC	5 cut(s)	37, 332, 370, 564, 584
KflI	GGGWCCC	1 cut(s)	623
Kpn2I	TCCGGA	1 cut(s)	537
KroI	GCCGGC	2 cut(s)	305, 639
KroNI	GCCGGC	2 cut(s)	307, 641
Kzo9I	GATC	4 cut(s)	183, 291, 365, 468
LmnI	GCTCC	4 cut(s)	44, 339, 540, 553
Lsp1109I	GCAGC	5 cut(s)	341, 417, 439, 465, 507
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	59
MalI	GATC	4 cut(s)	185, 293, 367, 470
MbiI	CCGCTC	1 cut(s)	456
MboI	GATC	4 cut(s)	183, 291, 365, 468
MboII	GAAGA	5 cut(s)	193, 235, 313, 415, 553
MfeI	CAATTG	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	2 cut(s)	133, 416
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	138
MroI	TCCGGA	1 cut(s)	537
MroNI	GCCGGC	2 cut(s)	305, 639
MseI	TTAA	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	430
MspI	CCGG	6 cut(s)	207, 306, 382, 387, 538, 640
MspR9I	CCNGG	2 cut(s)	194, 383
MunI	CAATTG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	194
MvnI	CGCG	4 cut(s)	332, 370, 564, 586
MwoI	GCNNNNNNNGC	3 cut(s)	10, 126, 135
NaeI	GCCGGC	2 cut(s)	307, 641
NciI	CCSGG	1 cut(s)	383
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	4 cut(s)	183, 291, 365, 468
NgoMIV	GCCGGC	2 cut(s)	305, 639
NlaIII	CATG	2 cut(s)	37, 415
NlaIV	GGNNCC	4 cut(s)	211, 549, 624, 625
PdiI	GCCGGC	2 cut(s)	307, 641
PfeI	GAWTC	1 cut(s)	667
PflFI	GACNNNGTC	1 cut(s)	446
Ple19I	CGATCG	1 cut(s)	368
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PpuMI	RGGWCCY	1 cut(s)	623
Psp124BI	GAGCTC	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	4 cut(s)	211, 549, 624, 625
PspPI	GGNCC	4 cut(s)	196, 384, 528, 623
PspPPI	RGGWCCY	1 cut(s)	623
PstI	CTGCAG	1 cut(s)	435
PsyI	GACNNNGTC	1 cut(s)	446
PvuI	CGATCG	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	430
RgaI	GCGATCGC	1 cut(s)	368
RsaI	GTAC	1 cut(s)	664
RsaNI	GTAC	1 cut(s)	663
SacI	GAGCTC	1 cut(s)	537
SaqAI	TTAA	1 cut(s)	524
Sau3AI	GATC	4 cut(s)	183, 291, 365, 468
Sau96I	GGNCC	4 cut(s)	196, 384, 528, 623
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	2 cut(s)	194, 383
SduI	GDGCHC	1 cut(s)	537
SfaAI	GCGATCGC	1 cut(s)	368
SfcI	CTRYAG	1 cut(s)	431
SgfI	GCGATCGC	1 cut(s)	368
SinI	GGWCC	3 cut(s)	196, 528, 623
Sse9I	AATT	2 cut(s)	133, 416
SspMI	CTAG	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	537
StyD4I	CCNGG	2 cut(s)	192, 381
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	1 cut(s)	446
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	4 cut(s)	174, 345, 420, 471
TasI	AATT	2 cut(s)	133, 416
TauI	GCSGC	5 cut(s)	332, 360, 495, 564, 639
TfiI	GAWTC	1 cut(s)	667
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TseI	GCWGC	5 cut(s)	354, 427, 430, 478, 495
TspGWI	ACGGA	1 cut(s)	452
Tth111I	GACNNNGTC	1 cut(s)	446
VpaK11BI	GGWCC	3 cut(s)	196, 528, 623
XapI	RAATTY	1 cut(s)	416
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.