Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8196536.1

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Forward (+)

18 .. 695

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8196536.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgtgcctgacgcgccctcctcccctattcgccaccaccatcatgcgctcttcctcaggctccttcaccgccacgtcatcctcctctccgtccccgaaacccaaatcctcgaaccctaaccaccactccaatggcggcagcaacccgaattgcacgctcctctgcaagcactcgccgtcggcgaccctggacctcctaatcctcatcctggtcctcttctccggcaccttcctcatcacctcctacttctcctacatcttcaactccctctccctcctcctctcccactccgccccgcacctccagttcctcccgatcccctacctcctcggcttcctcttcttcttcgtcgccgccctcctcttcgtcgagttctgctgcggcgcccgatcgcgcaagtgcgaccgccacggctgcaagggcttgaagaaggccatggaattcgatttgcagctgcagacggaggagtgtgtcaagaccgggtctaaggagatcgataagttgccctggaagggcgggagtgacaccaatcccgattacgagtgtctccgctccgagctccggaagatggctccgcacaatggccgtgccgtcctgctctttcgggcgcggtgtggctgccccgtcgccaaacttgaaggctggggtcccaagcgaggccgccggcataagaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

24.9

Weight (kDa)

9.56

Isoelectric Point (pI)

58.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	224, 383
AccBSI	CCGCTC	1 cut(s)	552
AccII	CGCG	3 cut(s)	13, 394, 610
AccIII	TCCGGA	1 cut(s)	561
AclWI	GGATC	1 cut(s)	310
AcoI	YGGCCR	1 cut(s)	583
AcsI	RAATTY	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	384
AfiI	CCNNNNNNNGG	6 cut(s)	208, 512, 561, 568, 581, 656
AgsI	TTSAA	3 cut(s)	262, 427, 638
AjiI	CACGTC	1 cut(s)	75
AjnI	CCWGG	3 cut(s)	186, 207, 506
AluBI	AGCT	2 cut(s)	454, 559
AluI	AGCT	2 cut(s)	454, 559
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	1 cut(s)	551
AlwI	GGATC	1 cut(s)	310
Aor13HI	TCCGGA	1 cut(s)	561
AoxI	GGCC	3 cut(s)	432, 583, 658
ApeKI	GCWGC	6 cut(s)	138, 378, 414, 451, 454, 618
ApoI	RAATTY	1 cut(s)	440
AspLEI	GCGC	5 cut(s)	15, 48, 386, 396, 610
AspS9I	GGNCC	3 cut(s)	190, 211, 647
AsuC2I	CCSGG	1 cut(s)	481
AsuHPI	GGTGA	2 cut(s)	58, 229
AvaII	GGWCC	3 cut(s)	190, 211, 647
AxyI	CCTNAGG	1 cut(s)	55
BanI	GGYRCC	2 cut(s)	224, 383
BanII	GRGCYC	1 cut(s)	561
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	6 cut(s)	150, 365, 401, 441, 463, 605
BccI	CCATC	2 cut(s)	47, 562
BceAI	ACGGC	4 cut(s)	160, 427, 570, 575
BciT130I	CCWGG	3 cut(s)	188, 209, 508
BcnI	CCSGG	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	551
BfmI	CTRYAG	1 cut(s)	455
BfoI	RGCGCY	1 cut(s)	387
Bme1390I	CCNGG	4 cut(s)	188, 209, 481, 508
Bme18I	GGWCC	3 cut(s)	190, 211, 647
BmgBI	CACGTC	1 cut(s)	75
BmgT120I	GGNCC	3 cut(s)	190, 211, 647
BmiI	GGNNCC	6 cut(s)	61, 226, 385, 573, 648, 649
BmrFI	CCNGG	4 cut(s)	188, 209, 481, 508
BpmI	CTGGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	481
Bsa29I	ATCGAT	1 cut(s)	495
BsaHI	GRCGYC	1 cut(s)	384
BsaJI	CCNNGG	5 cut(s)	186, 328, 409, 435, 506
BsaWI	WCCGGW	1 cut(s)	561
BsaXI	ACNNNNNCTCC	5 cut(s)	31, 110, 140, 254, 284
Bsc4I	CCNNNNNNNGG	6 cut(s)	208, 512, 561, 568, 581, 656
Bse118I	RCCGGY	1 cut(s)	663
Bse1I	ACTGG	1 cut(s)	304
Bse21I	CCTNAGG	1 cut(s)	55
BseAI	TCCGGA	1 cut(s)	561
BseBI	CCWGG	3 cut(s)	188, 209, 508
BseCI	ATCGAT	1 cut(s)	495
BseDI	CCNNGG	5 cut(s)	186, 328, 409, 435, 506
BseGI	GGATG	2 cut(s)	77, 204
BseLI	CCNNNNNNNGG	6 cut(s)	208, 512, 561, 568, 581, 656
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	8 cut(s)	9, 73, 149, 266, 269, 317, 350, 479
BseXI	GCAGC	6 cut(s)	150, 365, 401, 441, 463, 605
BseYI	CCCAGC	1 cut(s)	642
Bsh1236I	CGCG	3 cut(s)	13, 394, 610
Bsh1285I	CGRYCG	2 cut(s)	392, 406
BshFI	GGCC	3 cut(s)	434, 585, 660
BshNI	GGYRCC	2 cut(s)	224, 383
BshVI	ATCGAT	1 cut(s)	495
BsiEI	CGRYCG	2 cut(s)	392, 406
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	4 cut(s)	222, 480, 562, 664
BslFI	GGGAC	2 cut(s)	76, 633
BslI	CCNNNNNNNGG	6 cut(s)	208, 512, 561, 568, 581, 656
BsmAI	GTCTC	1 cut(s)	551
BsmFI	GGGAC	2 cut(s)	76, 633
BsnI	GGCC	3 cut(s)	434, 585, 660
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp13I	TCCGGA	1 cut(s)	561
Bsp143I	GATC	3 cut(s)	315, 389, 492
Bsp19I	CCATGG	1 cut(s)	435
BspANI	GGCC	3 cut(s)	434, 585, 660
BspCNI	CTCAG	1 cut(s)	68
BspDI	ATCGAT	1 cut(s)	495
BspEI	TCCGGA	1 cut(s)	561
BspFNI	CGCG	3 cut(s)	13, 394, 610
BspLI	GGNNCC	6 cut(s)	61, 226, 385, 573, 648, 649
BspMAI	CTGCAG	1 cut(s)	459
BspPI	GGATC	1 cut(s)	310
BspQI	GCTCTTC	1 cut(s)	55
BspT107I	GGYRCC	2 cut(s)	224, 383
BsrBI	CCGCTC	1 cut(s)	552
BsrFI	RCCGGY	1 cut(s)	663
BsrI	ACTGG	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	663
BssECI	CCNNGG	5 cut(s)	186, 328, 409, 435, 506
BssMI	GATC	3 cut(s)	315, 389, 492
BssNI	GRCGYC	1 cut(s)	384
BssT1I	CCWWGG	1 cut(s)	435
Bst2UI	CCWGG	3 cut(s)	188, 209, 508
Bst6I	CTCTTC	4 cut(s)	55, 221, 344, 368
BstACI	GRCGYC	1 cut(s)	384
BstC8I	GCNNGC	3 cut(s)	155, 167, 665
BstDEI	CTNAG	2 cut(s)	55, 486
BstDSI	CCRYGG	2 cut(s)	409, 435
BstF5I	GGATG	2 cut(s)	77, 204
BstFNI	CGCG	3 cut(s)	13, 394, 610
BstH2I	RGCGCY	1 cut(s)	387
BstHHI	GCGC	5 cut(s)	15, 48, 386, 396, 610
BstKTI	GATC	3 cut(s)	318, 392, 495
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	3 cut(s)	315, 389, 492
BstMCI	CGRYCG	2 cut(s)	392, 406
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 414, 420
BstNI	CCWGG	3 cut(s)	188, 209, 508
BstSCI	CCNGG	4 cut(s)	186, 207, 479, 506
BstSFI	CTRYAG	1 cut(s)	455
BstUI	CGCG	3 cut(s)	13, 394, 610
BstV1I	GCAGC	6 cut(s)	150, 365, 401, 441, 463, 605
BstXI	CCANNNNNNTGG	1 cut(s)	131
Bsu15I	ATCGAT	1 cut(s)	495
Bsu36I	CCTNAGG	1 cut(s)	55
BsuRI	GGCC	3 cut(s)	434, 585, 660
BsuTUI	ATCGAT	1 cut(s)	495
BtgI	CCRYGG	2 cut(s)	409, 435
BtrI	CACGTC	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	77, 204
Cac8I	GCNNGC	3 cut(s)	155, 167, 665
CfoI	GCGC	5 cut(s)	15, 48, 386, 396, 610
Cfr10I	RCCGGY	1 cut(s)	663
Cfr13I	GGNCC	3 cut(s)	190, 211, 647
ClaI	ATCGAT	1 cut(s)	495
CseI	GACGC	1 cut(s)	19
CviAII	CATG	2 cut(s)	43, 436
DdeI	CTNAG	2 cut(s)	55, 486
DinI	GGCGCC	1 cut(s)	385
DpnI	GATC	3 cut(s)	317, 391, 494
DpnII	GATC	3 cut(s)	315, 389, 492
EaeI	YGGCCR	1 cut(s)	583
Eam1104I	CTCTTC	4 cut(s)	55, 221, 344, 368
EarI	CTCTTC	4 cut(s)	55, 221, 344, 368
EciI	GGCGGA	1 cut(s)	280
Ecl136II	GAGCTC	1 cut(s)	559
Eco130I	CCWWGG	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	561
Eco47I	GGWCC	3 cut(s)	190, 211, 647
Eco53kI	GAGCTC	1 cut(s)	559
Eco81I	CCTNAGG	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	559
EcoO109I	RGGNCCY	1 cut(s)	647
EcoRI	GAATTC	1 cut(s)	440
EcoRII	CCWGG	3 cut(s)	186, 207, 506
EcoT14I	CCWWGG	1 cut(s)	435
EcoT38I	GRGCYC	1 cut(s)	561
EgeI	GGCGCC	1 cut(s)	385
EheI	GGCGCC	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	2 cut(s)	46, 439
FaiI	YATR	3 cut(s)	44, 437, 669
FaqI	GGGAC	2 cut(s)	76, 633
FatI	CATG	2 cut(s)	42, 435
FauI	CCCGC	2 cut(s)	303, 509
FokI	GGATG	2 cut(s)	64, 191
FriOI	GRGCYC	1 cut(s)	561
GlaI	GCGC	5 cut(s)	14, 47, 385, 395, 609
GsaI	CCCAGC	1 cut(s)	646
GsuI	CTGGAG	1 cut(s)	287
HaeII	RGCGCY	1 cut(s)	387
HaeIII	GGCC	3 cut(s)	434, 585, 660
HapII	CCGG	4 cut(s)	222, 480, 562, 664
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	5 cut(s)	15, 48, 386, 396, 610
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	2 cut(s)	46, 439
Hin6I	GCGC	5 cut(s)	13, 46, 384, 394, 608
HinP1I	GCGC	5 cut(s)	13, 46, 384, 394, 608
HpaII	CCGG	4 cut(s)	222, 480, 562, 664
HphI	GGTGA	2 cut(s)	58, 229
Hpy188I	TCNGA	1 cut(s)	556
Hpy188III	TCNNGA	4 cut(s)	313, 475, 533, 562
Hpy99I	CGWCG	4 cut(s)	181, 353, 371, 629
HpyAV	CCTTC	5 cut(s)	73, 238, 424, 505, 632
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	5 cut(s)	153, 165, 417, 451, 457
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 414, 420
HpyF3I	CTNAG	2 cut(s)	55, 486
HpySE526I	ACGT	1 cut(s)	74
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	2 cut(s)	46, 439
HspAI	GCGC	5 cut(s)	13, 46, 384, 394, 608
KasI	GGCGCC	1 cut(s)	383
KflI	GGGWCCC	1 cut(s)	647
Kpn2I	TCCGGA	1 cut(s)	561
KroI	GCCGGC	1 cut(s)	663
KroNI	GCCGGC	1 cut(s)	665
Kzo9I	GATC	3 cut(s)	315, 389, 492
LguI	GCTCTTC	1 cut(s)	55
LmnI	GCTCC	5 cut(s)	65, 162, 557, 564, 577
Lsp1109I	GCAGC	6 cut(s)	150, 365, 401, 441, 463, 605
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	3 cut(s)	317, 391, 494
MbiI	CCGCTC	1 cut(s)	552
MboI	GATC	3 cut(s)	315, 389, 492
MboII	GAAGA	9 cut(s)	42, 208, 250, 331, 334, 337, 355, 439, 577
MhlI	GDGCHC	1 cut(s)	561
MluCI	AATT	2 cut(s)	148, 440
Mly113I	GGCGCC	1 cut(s)	384
MroI	TCCGGA	1 cut(s)	561
MroNI	GCCGGC	1 cut(s)	663
MslI	CAYNNNNRTG	2 cut(s)	41, 129
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	4 cut(s)	222, 480, 562, 664
MspR9I	CCNGG	4 cut(s)	188, 209, 481, 508
MvaI	CCWGG	3 cut(s)	188, 209, 508
MvnI	CGCG	3 cut(s)	13, 394, 610
MwoI	GCNNNNNNNGC	3 cut(s)	12, 414, 420
NaeI	GCCGGC	1 cut(s)	665
NarI	GGCGCC	1 cut(s)	384
NciI	CCSGG	1 cut(s)	481
NcoI	CCATGG	1 cut(s)	435
NdeII	GATC	3 cut(s)	315, 389, 492
NgoMIV	GCCGGC	1 cut(s)	663
NlaIII	CATG	2 cut(s)	46, 439
NlaIV	GGNNCC	6 cut(s)	61, 226, 385, 573, 648, 649
NmeAIII	GCCGAG	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	521
PciSI	GCTCTTC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	179
PdiI	GCCGGC	1 cut(s)	665
PflFI	GACNNNGTC	1 cut(s)	481
Ple19I	CGATCG	1 cut(s)	392
PluTI	GGCGCC	1 cut(s)	387
PpuMI	RGGWCCY	1 cut(s)	647
Psp124BI	GAGCTC	1 cut(s)	561
Psp5II	RGGWCCY	1 cut(s)	647
Psp6I	CCWGG	3 cut(s)	186, 207, 506
PspFI	CCCAGC	1 cut(s)	642
PspGI	CCWGG	3 cut(s)	186, 207, 506
PspN4I	GGNNCC	6 cut(s)	61, 226, 385, 573, 648, 649
PspPI	GGNCC	3 cut(s)	190, 211, 647
PspPPI	RGGWCCY	1 cut(s)	647
PstI	CTGCAG	1 cut(s)	459
PsyI	GACNNNGTC	1 cut(s)	481
PvuI	CGATCG	1 cut(s)	392
PvuII	CAGCTG	1 cut(s)	454
RseI	CAYNNNNRTG	2 cut(s)	41, 129
SacI	GAGCTC	1 cut(s)	561
SapI	GCTCTTC	1 cut(s)	55
Sau3AI	GATC	3 cut(s)	315, 389, 492
Sau96I	GGNCC	3 cut(s)	190, 211, 647
ScrFI	CCNGG	4 cut(s)	188, 209, 481, 508
SduI	GDGCHC	1 cut(s)	561
SetI	ASST	8 cut(s)	77, 195, 230, 242, 303, 327, 456, 561
SfcI	CTRYAG	1 cut(s)	455
SfoI	GGCGCC	1 cut(s)	385
SinI	GGWCC	3 cut(s)	190, 211, 647
SmiMI	CAYNNNNRTG	2 cut(s)	41, 129
Sse9I	AATT	2 cut(s)	148, 440
SspDI	GGCGCC	1 cut(s)	383
SstI	GAGCTC	1 cut(s)	561
StyD4I	CCNGG	4 cut(s)	186, 207, 479, 506
StyI	CCWWGG	1 cut(s)	435
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	4 cut(s)	110, 369, 444, 495
TasI	AATT	2 cut(s)	148, 440
TauI	GCSGC	4 cut(s)	138, 356, 384, 663
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	6 cut(s)	138, 378, 414, 451, 454, 618
Tsp45I	GTSAC	1 cut(s)	521
TspGWI	ACGGA	2 cut(s)	78, 476
Tth111I	GACNNNGTC	1 cut(s)	481
VpaK11BI	GGWCC	3 cut(s)	190, 211, 647
XapI	RAATTY	1 cut(s)	440
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.