RLG00000001579
ERF Family

Ribosomal protein L34e superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002458
Physical Location & Seq
Forward (+)
17761869 .. 17762516
648 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001579

Sequence Viewer

Length: 549 bp
ATGCCACTGACCCAATACCAACACCCCAAAACGAAAACCCAAAGCCGCCCAAGCTGCTTGCCCAATCGTGCCGGAAATCGTGCGACTCCCTATGGCGCCGGCCCTGCCAAGGCGCTGGAGTCCAGTGGCAGCACAACATGTTCTCAGATCAGGGAGCCTCCTATGCAGCCCTGGCTGGCAGAGCCTCCTCCATCGAAACTGGAACCAAGCTCTAAATCTCTAATCCCAACAATGGCGTTTCCAACGAGGACATCAGGGAGCCTCCGCCATGTGATTATGCTGTTCCTCCCGATCCCCTACCTCCTCGTCTTCCTCTTCTTCTTCATCGCCTCCCTCCTCTACGTCAAGACCAAGTCTAAGGAGATAGATAAGTTGCCCTGGAAGGGCGGGAGTGACGCCAATCCCGATTACGAGTGTCTCCGGTTCGAGCTCCGGAAGATGGCTCCTCCTAATGGCTTTGCCGTCTTGCTGTTTCAGGCTCGATGTGGGTTCCCCATCACCAAGCTTGAAGGTTGGGGTCCTAAGCGAGGCCGCCGGCATAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.39

Weight (kDa)

10.1

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 95
AccIII TCCGGA 1 cut(s) 432
AciI CCGC 4 cut(s) 46, 265, 387, 532
AclWI GGATC 1 cut(s) 286
AcyI GRCGYC 2 cut(s) 96, 396
AfiI CCNNNNNNNGG 6 cut(s) 109, 232, 383, 439, 452, 527
AflIII ACRYGT 1 cut(s) 137
AgsI TTSAA 1 cut(s) 509
AjnI CCWGG 2 cut(s) 170, 377
AluBI AGCT 4 cut(s) 54, 210, 430, 505
AluI AGCT 4 cut(s) 54, 210, 430, 505
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 1 cut(s) 286
Aor13HI TCCGGA 1 cut(s) 432
AoxI GGCC 2 cut(s) 100, 529
ApeKI GCWGC 3 cut(s) 54, 129, 166
AspLEI GCGC 2 cut(s) 98, 115
AspS9I GGNCC 2 cut(s) 101, 518
AsuHPI GGTGA 1 cut(s) 490
AvaII GGWCC 1 cut(s) 518
BanI GGYRCC 1 cut(s) 95
BanII GRGCYC 1 cut(s) 432
BbsI GAAGAC 1 cut(s) 301
Bbv12I GWGCWC 1 cut(s) 432
BbvI GCAGC 3 cut(s) 41, 141, 178
BccI CCATC 3 cut(s) 199, 433, 503
BceAI ACGGC 1 cut(s) 446
BciT130I CCWGG 2 cut(s) 172, 379
BcoDI GTCTC 1 cut(s) 422
BfoI RGCGCY 2 cut(s) 99, 116
BisI GCNGC 5 cut(s) 46, 55, 130, 167, 532
BlsI GCNGC 5 cut(s) 47, 56, 131, 168, 533
Bme1390I CCNGG 2 cut(s) 172, 379
Bme18I GGWCC 1 cut(s) 518
BmgT120I GGNCC 2 cut(s) 101, 518
BmiI GGNNCC 7 cut(s) 97, 156, 204, 260, 444, 491, 519
BmrFI CCNGG 2 cut(s) 172, 379
BpiI GAAGAC 1 cut(s) 301
BpmI CTGGAG 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 522
BsaHI GRCGYC 2 cut(s) 96, 396
BsaJI CCNNGG 3 cut(s) 108, 170, 377
BsaWI WCCGGW 2 cut(s) 420, 432
Bsc4I CCNNNNNNNGG 6 cut(s) 109, 232, 383, 439, 452, 527
Bse118I RCCGGY 2 cut(s) 98, 534
Bse1I ACTGG 2 cut(s) 123, 204
BseAI TCCGGA 1 cut(s) 432
BseBI CCWGG 2 cut(s) 172, 379
BseDI CCNNGG 3 cut(s) 108, 170, 377
BseLI CCNNNNNNNGG 6 cut(s) 109, 232, 383, 439, 452, 527
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 2 cut(s) 123, 204
BseRI GAGGAG 4 cut(s) 177, 293, 326, 435
BseXI GCAGC 3 cut(s) 41, 141, 178
BshFI GGCC 2 cut(s) 102, 531
BshNI GGYRCC 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 432
BsiSI CCGG 5 cut(s) 72, 99, 421, 433, 535
BslI CCNNNNNNNGG 6 cut(s) 109, 232, 383, 439, 452, 527
BsmAI GTCTC 1 cut(s) 422
BsnI GGCC 2 cut(s) 102, 531
Bsp1286I GDGCHC 1 cut(s) 432
Bsp13I TCCGGA 1 cut(s) 432
Bsp143I GATC 2 cut(s) 147, 291
BspACI CCGC 4 cut(s) 46, 265, 387, 532
BspANI GGCC 2 cut(s) 102, 531
BspCNI CTCAG 1 cut(s) 157
BspEI TCCGGA 1 cut(s) 432
BspLI GGNNCC 7 cut(s) 97, 156, 204, 260, 444, 491, 519
BspPI GGATC 1 cut(s) 286
BspT107I GGYRCC 1 cut(s) 95
BsrFI RCCGGY 2 cut(s) 98, 534
BsrI ACTGG 2 cut(s) 123, 204
BssAI RCCGGY 2 cut(s) 98, 534
BssECI CCNNGG 3 cut(s) 108, 170, 377
BssMI GATC 2 cut(s) 147, 291
BssNI GRCGYC 2 cut(s) 96, 396
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 2 cut(s) 172, 379
Bst6I CTCTTC 1 cut(s) 320
BstACI GRCGYC 2 cut(s) 96, 396
BstC8I GCNNGC 4 cut(s) 59, 100, 177, 536
BstDEI CTNAG 3 cut(s) 144, 357, 522
BstENI CCTNNNNNAGG 1 cut(s) 525
BstH2I RGCGCY 2 cut(s) 99, 116
BstHHI GCGC 2 cut(s) 98, 115
BstKTI GATC 2 cut(s) 150, 294
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 2 cut(s) 147, 291
BstMWI GCNNNNNNNGC 6 cut(s) 51, 54, 104, 163, 172, 181
BstNI CCWGG 2 cut(s) 172, 379
BstNSI RCATGY 1 cut(s) 141
BstSCI CCNGG 2 cut(s) 170, 377
BstV1I GCAGC 3 cut(s) 41, 141, 178
BstV2I GAAGAC 1 cut(s) 301
BstXI CCANNNNNNTGG 1 cut(s) 115
BsuRI GGCC 2 cut(s) 102, 531
BtgZI GCGATG 1 cut(s) 310
BtsIMutI CAGTG 2 cut(s) 5, 130
Cac8I GCNNGC 4 cut(s) 59, 100, 177, 536
CfoI GCGC 2 cut(s) 98, 115
Cfr10I RCCGGY 2 cut(s) 98, 534
Cfr13I GGNCC 2 cut(s) 101, 518
CseI GACGC 1 cut(s) 404
CviAII CATG 2 cut(s) 138, 269
DdeI CTNAG 3 cut(s) 144, 357, 522
DinI GGCGCC 1 cut(s) 97
DpnI GATC 2 cut(s) 149, 293
DpnII GATC 2 cut(s) 147, 291
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
EciI GGCGGA 1 cut(s) 254
Ecl136II GAGCTC 1 cut(s) 430
Eco130I CCWWGG 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 518
Eco53kI GAGCTC 1 cut(s) 430
EcoICRI GAGCTC 1 cut(s) 430
EcoNI CCTNNNNNAGG 1 cut(s) 525
EcoO109I RGGNCCY 1 cut(s) 518
EcoRII CCWGG 2 cut(s) 170, 377
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 432
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 141, 272
FaiI YATR 6 cut(s) 93, 139, 164, 270, 278, 540
FatI CATG 2 cut(s) 137, 268
FauI CCCGC 1 cut(s) 380
Fnu4HI GCNGC 5 cut(s) 46, 55, 130, 167, 532
FriOI GRGCYC 1 cut(s) 432
Fsp4HI GCNGC 5 cut(s) 46, 55, 130, 167, 532
GlaI GCGC 2 cut(s) 97, 114
GluI GCNGC 5 cut(s) 46, 55, 130, 167, 532
GsuI CTGGAG 1 cut(s) 137
HaeII RGCGCY 2 cut(s) 99, 116
HaeIII GGCC 2 cut(s) 102, 531
HapII CCGG 5 cut(s) 72, 99, 421, 433, 535
HgaI GACGC 1 cut(s) 404
HhaI GCGC 2 cut(s) 98, 115
Hin1I GRCGYC 2 cut(s) 96, 396
Hin1II CATG 2 cut(s) 141, 272
Hin6I GCGC 2 cut(s) 96, 113
HinP1I GCGC 2 cut(s) 96, 113
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 2 cut(s) 85, 119
HpaII CCGG 5 cut(s) 72, 99, 421, 433, 535
HphI GGTGA 1 cut(s) 490
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 4 cut(s) 289, 346, 404, 433
HpyAV CCTTC 2 cut(s) 376, 503
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 6 cut(s) 51, 54, 104, 163, 172, 181
HpyF3I CTNAG 3 cut(s) 144, 357, 522
HpySE526I ACGT 1 cut(s) 342
Hsp92I GRCGYC 2 cut(s) 96, 396
Hsp92II CATG 2 cut(s) 141, 272
HspAI GCGC 2 cut(s) 96, 113
KasI GGCGCC 1 cut(s) 95
Kpn2I TCCGGA 1 cut(s) 432
KroI GCCGGC 2 cut(s) 98, 534
KroNI GCCGGC 2 cut(s) 100, 536
Kzo9I GATC 2 cut(s) 147, 291
LmnI GCTCC 4 cut(s) 154, 258, 435, 448
Lsp1109I GCAGC 3 cut(s) 41, 141, 178
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 392
MalI GATC 2 cut(s) 149, 293
MboI GATC 2 cut(s) 147, 291
MboII GAAGA 5 cut(s) 301, 307, 310, 313, 448
MhlI GDGCHC 1 cut(s) 432
Mly113I GGCGCC 1 cut(s) 96
MlyI GAGTC 2 cut(s) 79, 128
MmeI TCCRAC 1 cut(s) 266
MroI TCCGGA 1 cut(s) 432
MroNI GCCGGC 2 cut(s) 98, 534
MspI CCGG 5 cut(s) 72, 99, 421, 433, 535
MspR9I CCNGG 2 cut(s) 172, 379
MvaI CCWGG 2 cut(s) 172, 379
MwoI GCNNNNNNNGC 6 cut(s) 51, 54, 104, 163, 172, 181
NaeI GCCGGC 2 cut(s) 100, 536
NarI GGCGCC 1 cut(s) 96
NdeII GATC 2 cut(s) 147, 291
NgoMIV GCCGGC 2 cut(s) 98, 534
NlaIII CATG 2 cut(s) 141, 272
NlaIV GGNNCC 7 cut(s) 97, 156, 204, 260, 444, 491, 519
NmuCI GTSAC 1 cut(s) 392
NspI RCATGY 1 cut(s) 141
PciI ACATGT 1 cut(s) 137
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PdiI GCCGGC 2 cut(s) 100, 536
PflFI GACNNNGTC 1 cut(s) 352
PkrI GCNGC 5 cut(s) 47, 56, 131, 168, 533
PleI GAGTC 2 cut(s) 79, 127
PluTI GGCGCC 1 cut(s) 99
PpsI GAGTC 2 cut(s) 79, 127
PpuMI RGGWCCY 1 cut(s) 518
PscI ACATGT 1 cut(s) 137
Psp124BI GAGCTC 1 cut(s) 432
Psp5II RGGWCCY 1 cut(s) 518
Psp6I CCWGG 2 cut(s) 170, 377
PspGI CCWGG 2 cut(s) 170, 377
PspN4I GGNNCC 7 cut(s) 97, 156, 204, 260, 444, 491, 519
PspPI GGNCC 2 cut(s) 101, 518
PspPPI RGGWCCY 1 cut(s) 518
PsyI GACNNNGTC 1 cut(s) 352
SacI GAGCTC 1 cut(s) 432
SatI GCNGC 5 cut(s) 46, 55, 130, 167, 532
Sau3AI GATC 2 cut(s) 147, 291
Sau96I GGNCC 2 cut(s) 101, 518
SchI GAGTC 2 cut(s) 79, 128
ScrFI CCNGG 2 cut(s) 172, 379
SduI GDGCHC 1 cut(s) 432
SetI ASST 7 cut(s) 56, 212, 303, 345, 432, 507, 514
SfoI GGCGCC 1 cut(s) 97
SinI GGWCC 1 cut(s) 518
SsiI CCGC 4 cut(s) 46, 265, 387, 532
SspDI GGCGCC 1 cut(s) 95
SstI GAGCTC 1 cut(s) 432
StyD4I CCNGG 2 cut(s) 170, 377
StyI CCWWGG 1 cut(s) 108
TaiI ACGT 1 cut(s) 345
TaqI TCGA 3 cut(s) 194, 426, 481
TauI GCSGC 2 cut(s) 48, 534
TscAI CASTG 2 cut(s) 12, 130
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 3 cut(s) 54, 129, 166
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 1 cut(s) 313
TspRI CASTG 2 cut(s) 12, 130
Tth111I GACNNNGTC 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 518
XagI CCTNNNNNAGG 1 cut(s) 525
XceI RCATGY 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.