Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00417

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Forward (+)

85123 .. 89324

Gene Structure 4202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G010060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTGCCTGACGCGCCCTCCTCCCCTATTCGCCACCACCATCATGCGCTCTTCCTCAGGCTCCTCCTCCTCCTTCACCGCCACGTCATCCTCCTCTCCGTCCCCGAAACCCAAATCCTCAAACCCTAACCACCACTCCAATGGCGGCAGCAACCCGAATTGCACGCTCCTCTGCAAGCACTCGCCGTCGGCGACCCTGGACCTCCTAATCCTCATCCTGGTCCTCTTCTCCGGCACCTTCCTCATCACCTCCTACTTCTCCTACATCTTCAACTCCCTCTCCCTCCTCCTCTCCCACTCCGCCCCGCACCTCCAGTTCCTCCCGATCCCCTACCTCCTCGGCTTCCTCTTCTTCTTCGTCGCCGCCCTCCTCTTCGTCGAGTTCTGCTGCGGCGCCCGATCGCGCAAGTGCGACCGCCACGGCTGCAAGGGCTTGAAGAAGGCCATGGAATTCGATTTGCAGCTGCAGACGGAGGAGTGTGTCAAGACCGGGTCTAAGGAGATCGATAAGTTGCCCTGGAAGGGCGGGAGTGACACCAATCCCGATTACGAGTGTCTCCGCTCCGAGCTCCGGAAGATGGCTCCGCACAATGGCCGTGCCGTCCTGCTCTTTCGGGCACGGTGTGGCTGCCCCGTCGCCAAACTTGAAGGCTGGGGTCCCAAGCGAGGCCGCCGGCATAAGAAGGCTCTGGCTAGTACGATTCCCAACGGAGGAGACAATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

26.43

Weight (kDa)

9.56

Isoelectric Point (pI)

57.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	233, 392
AccBSI	CCGCTC	1 cut(s)	561
AccII	CGCG	2 cut(s)	13, 403
AccIII	TCCGGA	1 cut(s)	570
AclWI	GGATC	1 cut(s)	319
AcoI	YGGCCR	1 cut(s)	592
AcsI	RAATTY	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	393
AdeI	CACNNNGTG	1 cut(s)	623
AfaI	GTAC	1 cut(s)	697
AfiI	CCNNNNNNNGG	7 cut(s)	217, 521, 570, 577, 590, 665, 710
AgsI	TTSAA	3 cut(s)	271, 436, 647
AjiI	CACGTC	1 cut(s)	84
AjnI	CCWGG	3 cut(s)	195, 216, 515
AluBI	AGCT	2 cut(s)	463, 568
AluI	AGCT	2 cut(s)	463, 568
Alw21I	GWGCWC	1 cut(s)	570
Alw26I	GTCTC	2 cut(s)	560, 708
AlwI	GGATC	1 cut(s)	319
Aor13HI	TCCGGA	1 cut(s)	570
AoxI	GGCC	3 cut(s)	441, 592, 667
ApeKI	GCWGC	6 cut(s)	147, 387, 423, 460, 463, 627
ApoI	RAATTY	1 cut(s)	449
AspLEI	GCGC	4 cut(s)	15, 48, 395, 405
AspS9I	GGNCC	3 cut(s)	199, 220, 656
AsuC2I	CCSGG	1 cut(s)	490
AsuHPI	GGTGA	2 cut(s)	67, 238
AvaII	GGWCC	3 cut(s)	199, 220, 656
AxyI	CCTNAGG	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	619
BanI	GGYRCC	2 cut(s)	233, 392
BanII	GRGCYC	1 cut(s)	570
Bbv12I	GWGCWC	1 cut(s)	570
BbvI	GCAGC	6 cut(s)	159, 374, 410, 450, 472, 614
BccI	CCATC	2 cut(s)	47, 571
BceAI	ACGGC	4 cut(s)	169, 436, 579, 584
BciT130I	CCWGG	3 cut(s)	197, 218, 517
BcnI	CCSGG	1 cut(s)	490
BcoDI	GTCTC	2 cut(s)	560, 708
BfaI	CTAG	1 cut(s)	693
BfmI	CTRYAG	1 cut(s)	464
BfoI	RGCGCY	1 cut(s)	396
Bme1390I	CCNGG	4 cut(s)	197, 218, 490, 517
Bme18I	GGWCC	3 cut(s)	199, 220, 656
BmgBI	CACGTC	1 cut(s)	84
BmgT120I	GGNCC	3 cut(s)	199, 220, 656
BmiI	GGNNCC	6 cut(s)	61, 235, 394, 582, 657, 658
BmrFI	CCNGG	4 cut(s)	197, 218, 490, 517
BpmI	CTGGAG	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	490
Bsa29I	ATCGAT	1 cut(s)	504
BsaHI	GRCGYC	1 cut(s)	393
BsaJI	CCNNGG	5 cut(s)	195, 337, 418, 444, 515
BsaWI	WCCGGW	1 cut(s)	570
BsaXI	ACNNNNNCTCC	5 cut(s)	31, 119, 149, 263, 293
Bsc4I	CCNNNNNNNGG	7 cut(s)	217, 521, 570, 577, 590, 665, 710
Bse118I	RCCGGY	1 cut(s)	672
Bse1I	ACTGG	1 cut(s)	313
Bse21I	CCTNAGG	1 cut(s)	55
BseAI	TCCGGA	1 cut(s)	570
BseBI	CCWGG	3 cut(s)	197, 218, 517
BseCI	ATCGAT	1 cut(s)	504
BseDI	CCNNGG	5 cut(s)	195, 337, 418, 444, 515
BseGI	GGATG	2 cut(s)	86, 213
BseLI	CCNNNNNNNGG	7 cut(s)	217, 521, 570, 577, 590, 665, 710
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	313
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	6 cut(s)	159, 374, 410, 450, 472, 614
BseYI	CCCAGC	1 cut(s)	651
Bsh1236I	CGCG	2 cut(s)	13, 403
Bsh1285I	CGRYCG	2 cut(s)	401, 415
BshFI	GGCC	3 cut(s)	443, 594, 669
BshNI	GGYRCC	2 cut(s)	233, 392
BshVI	ATCGAT	1 cut(s)	504
BsiEI	CGRYCG	2 cut(s)	401, 415
BsiHKAI	GWGCWC	1 cut(s)	570
BsiSI	CCGG	4 cut(s)	231, 489, 571, 673
BslFI	GGGAC	2 cut(s)	85, 642
BslI	CCNNNNNNNGG	7 cut(s)	217, 521, 570, 577, 590, 665, 710
BsmAI	GTCTC	2 cut(s)	560, 708
BsmFI	GGGAC	2 cut(s)	85, 642
BsnI	GGCC	3 cut(s)	443, 594, 669
Bsp1286I	GDGCHC	2 cut(s)	570, 619
Bsp13I	TCCGGA	1 cut(s)	570
Bsp143I	GATC	3 cut(s)	324, 398, 501
Bsp19I	CCATGG	1 cut(s)	444
BspANI	GGCC	3 cut(s)	443, 594, 669
BspCNI	CTCAG	1 cut(s)	68
BspDI	ATCGAT	1 cut(s)	504
BspEI	TCCGGA	1 cut(s)	570
BspFNI	CGCG	2 cut(s)	13, 403
BspLI	GGNNCC	6 cut(s)	61, 235, 394, 582, 657, 658
BspMAI	CTGCAG	1 cut(s)	468
BspPI	GGATC	1 cut(s)	319
BspQI	GCTCTTC	1 cut(s)	55
BspT107I	GGYRCC	2 cut(s)	233, 392
BsrBI	CCGCTC	1 cut(s)	561
BsrFI	RCCGGY	1 cut(s)	672
BsrI	ACTGG	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	672
BssECI	CCNNGG	5 cut(s)	195, 337, 418, 444, 515
BssMI	GATC	3 cut(s)	324, 398, 501
BssNI	GRCGYC	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	444
Bst2UI	CCWGG	3 cut(s)	197, 218, 517
Bst4CI	ACNGT	1 cut(s)	621
Bst6I	CTCTTC	4 cut(s)	55, 230, 353, 377
BstACI	GRCGYC	1 cut(s)	393
BstC8I	GCNNGC	3 cut(s)	164, 176, 674
BstDEI	CTNAG	2 cut(s)	55, 495
BstDSI	CCRYGG	2 cut(s)	418, 444
BstF5I	GGATG	2 cut(s)	86, 213
BstFNI	CGCG	2 cut(s)	13, 403
BstH2I	RGCGCY	1 cut(s)	396
BstHHI	GCGC	4 cut(s)	15, 48, 395, 405
BstKTI	GATC	3 cut(s)	327, 401, 504
BstMAI	GTCTC	2 cut(s)	560, 708
BstMBI	GATC	3 cut(s)	324, 398, 501
BstMCI	CGRYCG	2 cut(s)	401, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 423, 429
BstNI	CCWGG	3 cut(s)	197, 218, 517
BstSCI	CCNGG	4 cut(s)	195, 216, 488, 515
BstSFI	CTRYAG	1 cut(s)	464
BstSLI	GKGCMC	1 cut(s)	619
BstUI	CGCG	2 cut(s)	13, 403
BstV1I	GCAGC	6 cut(s)	159, 374, 410, 450, 472, 614
BstXI	CCANNNNNNTGG	1 cut(s)	140
Bsu15I	ATCGAT	1 cut(s)	504
Bsu36I	CCTNAGG	1 cut(s)	55
BsuRI	GGCC	3 cut(s)	443, 594, 669
BsuTUI	ATCGAT	1 cut(s)	504
BtgI	CCRYGG	2 cut(s)	418, 444
BtrI	CACGTC	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	86, 213
Cac8I	GCNNGC	3 cut(s)	164, 176, 674
CfoI	GCGC	4 cut(s)	15, 48, 395, 405
Cfr10I	RCCGGY	1 cut(s)	672
Cfr13I	GGNCC	3 cut(s)	199, 220, 656
ClaI	ATCGAT	1 cut(s)	504
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	696
CviAII	CATG	2 cut(s)	43, 445
CviQI	GTAC	1 cut(s)	696
DdeI	CTNAG	2 cut(s)	55, 495
DinI	GGCGCC	1 cut(s)	394
DpnI	GATC	3 cut(s)	326, 400, 503
DpnII	GATC	3 cut(s)	324, 398, 501
DraIII	CACNNNGTG	1 cut(s)	623
EaeI	YGGCCR	1 cut(s)	592
Eam1104I	CTCTTC	4 cut(s)	55, 230, 353, 377
EarI	CTCTTC	4 cut(s)	55, 230, 353, 377
EciI	GGCGGA	1 cut(s)	289
Ecl136II	GAGCTC	1 cut(s)	568
Eco130I	CCWWGG	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	570
Eco47I	GGWCC	3 cut(s)	199, 220, 656
Eco53kI	GAGCTC	1 cut(s)	568
Eco81I	CCTNAGG	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	568
EcoO109I	RGGNCCY	1 cut(s)	656
EcoRI	GAATTC	1 cut(s)	449
EcoRII	CCWGG	3 cut(s)	195, 216, 515
EcoT14I	CCWWGG	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	570
EgeI	GGCGCC	1 cut(s)	394
EheI	GGCGCC	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	2 cut(s)	46, 448
FaiI	YATR	3 cut(s)	44, 446, 678
FaqI	GGGAC	2 cut(s)	85, 642
FatI	CATG	2 cut(s)	42, 444
FauI	CCCGC	2 cut(s)	312, 518
FokI	GGATG	2 cut(s)	73, 200
FriOI	GRGCYC	1 cut(s)	570
FspBI	CTAG	1 cut(s)	693
GlaI	GCGC	4 cut(s)	14, 47, 394, 404
GsaI	CCCAGC	1 cut(s)	655
GsuI	CTGGAG	1 cut(s)	296
HaeII	RGCGCY	1 cut(s)	396
HaeIII	GGCC	3 cut(s)	443, 594, 669
HapII	CCGG	4 cut(s)	231, 489, 571, 673
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	4 cut(s)	15, 48, 395, 405
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	2 cut(s)	46, 448
Hin6I	GCGC	4 cut(s)	13, 46, 393, 403
HinP1I	GCGC	4 cut(s)	13, 46, 393, 403
HinfI	GANTC	1 cut(s)	700
HpaII	CCGG	4 cut(s)	231, 489, 571, 673
HphI	GGTGA	2 cut(s)	67, 238
Hpy188I	TCNGA	1 cut(s)	565
Hpy188III	TCNNGA	4 cut(s)	322, 484, 542, 571
Hpy99I	CGWCG	4 cut(s)	190, 362, 380, 638
HpyAV	CCTTC	6 cut(s)	82, 247, 433, 514, 641, 676
HpyCH4III	ACNGT	1 cut(s)	621
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	5 cut(s)	162, 174, 426, 460, 466
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 423, 429
HpyF3I	CTNAG	2 cut(s)	55, 495
HpySE526I	ACGT	1 cut(s)	83
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	2 cut(s)	46, 448
HspAI	GCGC	4 cut(s)	13, 46, 393, 403
KasI	GGCGCC	1 cut(s)	392
KflI	GGGWCCC	1 cut(s)	656
Kpn2I	TCCGGA	1 cut(s)	570
KroI	GCCGGC	1 cut(s)	672
KroNI	GCCGGC	1 cut(s)	674
Kzo9I	GATC	3 cut(s)	324, 398, 501
LguI	GCTCTTC	1 cut(s)	55
LmnI	GCTCC	5 cut(s)	65, 171, 566, 573, 586
Lsp1109I	GCAGC	6 cut(s)	159, 374, 410, 450, 472, 614
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	3 cut(s)	326, 400, 503
MbiI	CCGCTC	1 cut(s)	561
MboI	GATC	3 cut(s)	324, 398, 501
MboII	GAAGA	9 cut(s)	42, 217, 259, 340, 343, 346, 364, 448, 586
MhlI	GDGCHC	2 cut(s)	570, 619
MluCI	AATT	2 cut(s)	157, 449
Mly113I	GGCGCC	1 cut(s)	393
MroI	TCCGGA	1 cut(s)	570
MroNI	GCCGGC	1 cut(s)	672
MslI	CAYNNNNRTG	2 cut(s)	41, 138
MspA1I	CMGCKG	1 cut(s)	463
MspI	CCGG	4 cut(s)	231, 489, 571, 673
MspR9I	CCNGG	4 cut(s)	197, 218, 490, 517
MvaI	CCWGG	3 cut(s)	197, 218, 517
MvnI	CGCG	2 cut(s)	13, 403
MwoI	GCNNNNNNNGC	3 cut(s)	12, 423, 429
NaeI	GCCGGC	1 cut(s)	674
NarI	GGCGCC	1 cut(s)	393
NciI	CCSGG	1 cut(s)	490
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	3 cut(s)	324, 398, 501
NgoMIV	GCCGGC	1 cut(s)	672
NlaIII	CATG	2 cut(s)	46, 448
NlaIV	GGNNCC	6 cut(s)	61, 235, 394, 582, 657, 658
NmeAIII	GCCGAG	1 cut(s)	318
NmuCI	GTSAC	1 cut(s)	530
PciSI	GCTCTTC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	188
PdiI	GCCGGC	1 cut(s)	674
PfeI	GAWTC	1 cut(s)	700
PflFI	GACNNNGTC	1 cut(s)	490
Ple19I	CGATCG	1 cut(s)	401
PluTI	GGCGCC	1 cut(s)	396
PpuMI	RGGWCCY	1 cut(s)	656
Psp124BI	GAGCTC	1 cut(s)	570
Psp5II	RGGWCCY	1 cut(s)	656
Psp6I	CCWGG	3 cut(s)	195, 216, 515
PspFI	CCCAGC	1 cut(s)	651
PspGI	CCWGG	3 cut(s)	195, 216, 515
PspN4I	GGNNCC	6 cut(s)	61, 235, 394, 582, 657, 658
PspPI	GGNCC	3 cut(s)	199, 220, 656
PspPPI	RGGWCCY	1 cut(s)	656
PstI	CTGCAG	1 cut(s)	468
PsyI	GACNNNGTC	1 cut(s)	490
PvuI	CGATCG	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	463
RsaI	GTAC	1 cut(s)	697
RsaNI	GTAC	1 cut(s)	696
RseI	CAYNNNNRTG	2 cut(s)	41, 138
SacI	GAGCTC	1 cut(s)	570
SapI	GCTCTTC	1 cut(s)	55
Sau3AI	GATC	3 cut(s)	324, 398, 501
Sau96I	GGNCC	3 cut(s)	199, 220, 656
ScrFI	CCNGG	4 cut(s)	197, 218, 490, 517
SduI	GDGCHC	2 cut(s)	570, 619
SetI	ASST	8 cut(s)	86, 204, 239, 251, 312, 336, 465, 570
SfcI	CTRYAG	1 cut(s)	464
SfoI	GGCGCC	1 cut(s)	394
SinI	GGWCC	3 cut(s)	199, 220, 656
SmiMI	CAYNNNNRTG	2 cut(s)	41, 138
Sse9I	AATT	2 cut(s)	157, 449
SspDI	GGCGCC	1 cut(s)	392
SspMI	CTAG	1 cut(s)	693
SstI	GAGCTC	1 cut(s)	570
StyD4I	CCNGG	4 cut(s)	195, 216, 488, 515
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	1 cut(s)	621
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	3 cut(s)	378, 453, 504
TasI	AATT	2 cut(s)	157, 449
TauI	GCSGC	4 cut(s)	147, 365, 393, 672
TfiI	GAWTC	1 cut(s)	700
TseFI	GTSAC	1 cut(s)	530
TseI	GCWGC	6 cut(s)	147, 387, 423, 460, 463, 627
Tsp45I	GTSAC	1 cut(s)	530
TspGWI	ACGGA	3 cut(s)	87, 485, 723
Tth111I	GACNNNGTC	1 cut(s)	490
VpaK11BI	GGWCC	3 cut(s)	199, 220, 656
XapI	RAATTY	1 cut(s)	449
XcmI	CCANNNNNNNNNTGG	1 cut(s)	137
XspI	CTAG	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.