Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Reverse (-)

22100367 .. 22104219

Gene Structure 3853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007860

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCGCCTGACGCGCCCTCCTCCCCTATTCGCCACCACCATCATGCGCTCTTCCTCAGGCTCCTCCTCCTCCTCCTTCACCGCCACGTCATCCTCCTCTCCGTCCCCGAAACCCAAATCCTCAAACCCTAACCACCACTCCAATGGCGGCAGCAACCCGAATTGCACGCTCCTCTGCAAGCACTCGCCGTCGGCGACCCTCGACCTCCTAATCCTCATCCTGGTCCTCTTCTCCGGCACCTTCCTCATCACCTCCTACTTCTCCTACATCTTCAACTCCCTCTCCCTCCTCCTCTCCCACTCCGCCCCGCACCTCCAGTTCCTCCCGATCCCCTACATCCTCGGCTTCCTCTTCTTCTTCGTCGCCGCCCTCCTCTTCGTCGAGTTCTGCTGCGGCGCCCGATCGCGCAAGTGCGACCGCCACGGCTGCAAGGGCTTGAAGAAGGCCATGGAATTCGATTTGCAGCTGCAGACGGAGGAGTGTGTCAAGACCGGGTCTAAGGAGATCGATAAGTTGCCCTGGAAGGGCGGGAGTGACACCAATCCCGATTACGAGTGTCTCCGGTCCGAGCTCCGGAAGATGGCTCCGCACAATGGCCGTGCCGTCCTGCTCTTTCGGGCGCGGTGTGGGTGCCCCGTCGCCAAGCTTGAAGGCTGGGGTCCCAAGCGAGGCCGCCGGCATAAGAAGGCTCTGGCTAGTTCGATTCCCAACGGAGGAGATAATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

26.55

Weight (kDa)

9.69

Isoelectric Point (pI)

58.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	236, 395, 630
AccII	CGCG	3 cut(s)	13, 406, 622
AccIII	TCCGGA	1 cut(s)	573
AclWI	GGATC	1 cut(s)	322
AcoI	YGGCCR	1 cut(s)	595
AcsI	RAATTY	1 cut(s)	452
AcyI	GRCGYC	1 cut(s)	396
AfiI	CCNNNNNNNGG	7 cut(s)	220, 524, 573, 580, 593, 668, 713
AgsI	TTSAA	3 cut(s)	274, 439, 650
AjiI	CACGTC	1 cut(s)	87
AjnI	CCWGG	2 cut(s)	219, 518
AluBI	AGCT	3 cut(s)	466, 571, 646
AluI	AGCT	3 cut(s)	466, 571, 646
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	1 cut(s)	563
AlwI	GGATC	1 cut(s)	322
Aor13HI	TCCGGA	1 cut(s)	573
AoxI	GGCC	3 cut(s)	444, 595, 670
ApeKI	GCWGC	5 cut(s)	150, 390, 426, 463, 466
ApoI	RAATTY	1 cut(s)	452
AspLEI	GCGC	6 cut(s)	6, 15, 48, 398, 408, 622
AspS9I	GGNCC	3 cut(s)	223, 564, 659
AsuC2I	CCSGG	1 cut(s)	493
AsuHPI	GGTGA	2 cut(s)	70, 241
AvaII	GGWCC	3 cut(s)	223, 564, 659
AxyI	CCTNAGG	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	635
BanI	GGYRCC	3 cut(s)	236, 395, 630
BanII	GRGCYC	1 cut(s)	573
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	5 cut(s)	162, 377, 413, 453, 475
BccI	CCATC	2 cut(s)	47, 574
BceAI	ACGGC	4 cut(s)	172, 439, 582, 587
BciT130I	CCWGG	2 cut(s)	221, 520
BcnI	CCSGG	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	563
BfaI	CTAG	1 cut(s)	696
BfmI	CTRYAG	1 cut(s)	467
BfoI	RGCGCY	1 cut(s)	399
BisI	GCNGC	9 cut(s)	148, 151, 366, 391, 394, 427, 464, 467, 673
BlsI	GCNGC	9 cut(s)	149, 152, 367, 392, 395, 428, 465, 468, 674
Bme1390I	CCNGG	3 cut(s)	221, 493, 520
Bme18I	GGWCC	3 cut(s)	223, 564, 659
BmgBI	CACGTC	1 cut(s)	87
BmgT120I	GGNCC	3 cut(s)	223, 564, 659
BmiI	GGNNCC	7 cut(s)	61, 238, 397, 585, 632, 660, 661
BmrFI	CCNGG	3 cut(s)	221, 493, 520
BpmI	CTGGAG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	493
Bsa29I	ATCGAT	1 cut(s)	507
BsaHI	GRCGYC	1 cut(s)	396
BsaJI	CCNNGG	4 cut(s)	340, 421, 447, 518
BsaWI	WCCGGW	2 cut(s)	561, 573
BsaXI	ACNNNNNCTCC	5 cut(s)	31, 122, 152, 266, 296
Bsc4I	CCNNNNNNNGG	7 cut(s)	220, 524, 573, 580, 593, 668, 713
Bse118I	RCCGGY	1 cut(s)	675
Bse1I	ACTGG	1 cut(s)	316
Bse21I	CCTNAGG	1 cut(s)	55
BseAI	TCCGGA	1 cut(s)	573
BseBI	CCWGG	2 cut(s)	221, 520
BseCI	ATCGAT	1 cut(s)	507
BseDI	CCNNGG	4 cut(s)	340, 421, 447, 518
BseGI	GGATG	3 cut(s)	89, 216, 336
BseLI	CCNNNNNNNGG	7 cut(s)	220, 524, 573, 580, 593, 668, 713
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	316
BseSI	GKGCMC	1 cut(s)	635
BseXI	GCAGC	5 cut(s)	162, 377, 413, 453, 475
BseYI	CCCAGC	1 cut(s)	654
Bsh1236I	CGCG	3 cut(s)	13, 406, 622
Bsh1285I	CGRYCG	2 cut(s)	404, 418
BshFI	GGCC	3 cut(s)	446, 597, 672
BshNI	GGYRCC	3 cut(s)	236, 395, 630
BshVI	ATCGAT	1 cut(s)	507
BsiEI	CGRYCG	2 cut(s)	404, 418
BsiHKAI	GWGCWC	1 cut(s)	573
BsiSI	CCGG	5 cut(s)	234, 492, 562, 574, 676
BslFI	GGGAC	2 cut(s)	88, 645
BslI	CCNNNNNNNGG	7 cut(s)	220, 524, 573, 580, 593, 668, 713
BsmAI	GTCTC	1 cut(s)	563
BsmFI	GGGAC	2 cut(s)	88, 645
BsnI	GGCC	3 cut(s)	446, 597, 672
Bsp1286I	GDGCHC	2 cut(s)	573, 635
Bsp13I	TCCGGA	1 cut(s)	573
Bsp143I	GATC	3 cut(s)	327, 401, 504
Bsp19I	CCATGG	1 cut(s)	447
BspANI	GGCC	3 cut(s)	446, 597, 672
BspCNI	CTCAG	1 cut(s)	68
BspDI	ATCGAT	1 cut(s)	507
BspEI	TCCGGA	1 cut(s)	573
BspFNI	CGCG	3 cut(s)	13, 406, 622
BspLI	GGNNCC	7 cut(s)	61, 238, 397, 585, 632, 660, 661
BspMAI	CTGCAG	1 cut(s)	471
BspPI	GGATC	1 cut(s)	322
BspQI	GCTCTTC	1 cut(s)	55
BspT107I	GGYRCC	3 cut(s)	236, 395, 630
BsrFI	RCCGGY	1 cut(s)	675
BsrI	ACTGG	1 cut(s)	316
BssAI	RCCGGY	1 cut(s)	675
BssECI	CCNNGG	4 cut(s)	340, 421, 447, 518
BssMI	GATC	3 cut(s)	327, 401, 504
BssNI	GRCGYC	1 cut(s)	396
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	2 cut(s)	221, 520
Bst6I	CTCTTC	4 cut(s)	55, 233, 356, 380
BstACI	GRCGYC	1 cut(s)	396
BstC8I	GCNNGC	3 cut(s)	167, 179, 677
BstDEI	CTNAG	2 cut(s)	55, 498
BstDSI	CCRYGG	2 cut(s)	421, 447
BstF5I	GGATG	3 cut(s)	89, 216, 336
BstFNI	CGCG	3 cut(s)	13, 406, 622
BstH2I	RGCGCY	1 cut(s)	399
BstHHI	GCGC	6 cut(s)	6, 15, 48, 398, 408, 622
BstKTI	GATC	3 cut(s)	330, 404, 507
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	3 cut(s)	327, 401, 504
BstMCI	CGRYCG	2 cut(s)	404, 418
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 12, 426, 432
BstNI	CCWGG	2 cut(s)	221, 520
BstSCI	CCNGG	3 cut(s)	219, 491, 518
BstSFI	CTRYAG	1 cut(s)	467
BstSLI	GKGCMC	1 cut(s)	635
BstUI	CGCG	3 cut(s)	13, 406, 622
BstV1I	GCAGC	5 cut(s)	162, 377, 413, 453, 475
BstXI	CCANNNNNNTGG	1 cut(s)	143
Bsu15I	ATCGAT	1 cut(s)	507
Bsu36I	CCTNAGG	1 cut(s)	55
BsuRI	GGCC	3 cut(s)	446, 597, 672
BsuTUI	ATCGAT	1 cut(s)	507
BtgI	CCRYGG	2 cut(s)	421, 447
BtrI	CACGTC	1 cut(s)	87
BtsCI	GGATG	3 cut(s)	89, 216, 336
Cac8I	GCNNGC	3 cut(s)	167, 179, 677
CfoI	GCGC	6 cut(s)	6, 15, 48, 398, 408, 622
Cfr10I	RCCGGY	1 cut(s)	675
Cfr13I	GGNCC	3 cut(s)	223, 564, 659
ClaI	ATCGAT	1 cut(s)	507
CpoI	CGGWCCG	1 cut(s)	564
CseI	GACGC	1 cut(s)	19
CspI	CGGWCCG	1 cut(s)	564
CviAII	CATG	2 cut(s)	43, 448
DdeI	CTNAG	2 cut(s)	55, 498
DinI	GGCGCC	1 cut(s)	397
DpnI	GATC	3 cut(s)	329, 403, 506
DpnII	GATC	3 cut(s)	327, 401, 504
EaeI	YGGCCR	1 cut(s)	595
Eam1104I	CTCTTC	4 cut(s)	55, 233, 356, 380
EarI	CTCTTC	4 cut(s)	55, 233, 356, 380
EciI	GGCGGA	1 cut(s)	292
Ecl136II	GAGCTC	1 cut(s)	571
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	573
Eco47I	GGWCC	3 cut(s)	223, 564, 659
Eco53kI	GAGCTC	1 cut(s)	571
Eco81I	CCTNAGG	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	571
EcoO109I	RGGNCCY	1 cut(s)	659
EcoRI	GAATTC	1 cut(s)	452
EcoRII	CCWGG	2 cut(s)	219, 518
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	573
EgeI	GGCGCC	1 cut(s)	397
EheI	GGCGCC	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	2 cut(s)	46, 451
FaiI	YATR	3 cut(s)	44, 449, 681
FaqI	GGGAC	2 cut(s)	88, 645
FatI	CATG	2 cut(s)	42, 447
FauI	CCCGC	2 cut(s)	315, 521
Fnu4HI	GCNGC	9 cut(s)	148, 151, 366, 391, 394, 427, 464, 467, 673
FokI	GGATG	3 cut(s)	76, 203, 323
FriOI	GRGCYC	1 cut(s)	573
Fsp4HI	GCNGC	9 cut(s)	148, 151, 366, 391, 394, 427, 464, 467, 673
FspBI	CTAG	1 cut(s)	696
GlaI	GCGC	6 cut(s)	5, 14, 47, 397, 407, 621
GluI	GCNGC	9 cut(s)	148, 151, 366, 391, 394, 427, 464, 467, 673
GsaI	CCCAGC	1 cut(s)	658
GsuI	CTGGAG	1 cut(s)	299
HaeII	RGCGCY	1 cut(s)	399
HaeIII	GGCC	3 cut(s)	446, 597, 672
HapII	CCGG	5 cut(s)	234, 492, 562, 574, 676
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	6 cut(s)	6, 15, 48, 398, 408, 622
Hin1I	GRCGYC	1 cut(s)	396
Hin1II	CATG	2 cut(s)	46, 451
Hin6I	GCGC	6 cut(s)	4, 13, 46, 396, 406, 620
HinP1I	GCGC	6 cut(s)	4, 13, 46, 396, 406, 620
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	1 cut(s)	703
HpaII	CCGG	5 cut(s)	234, 492, 562, 574, 676
HphI	GGTGA	2 cut(s)	70, 241
Hpy188I	TCNGA	1 cut(s)	568
Hpy188III	TCNNGA	4 cut(s)	325, 487, 545, 574
Hpy99I	CGWCG	4 cut(s)	193, 365, 383, 641
HpyAV	CCTTC	6 cut(s)	85, 250, 436, 517, 644, 679
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	5 cut(s)	165, 177, 429, 463, 469
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 12, 426, 432
HpyF3I	CTNAG	2 cut(s)	55, 498
HpySE526I	ACGT	1 cut(s)	86
Hsp92I	GRCGYC	1 cut(s)	396
Hsp92II	CATG	2 cut(s)	46, 451
HspAI	GCGC	6 cut(s)	4, 13, 46, 396, 406, 620
KasI	GGCGCC	1 cut(s)	395
KflI	GGGWCCC	1 cut(s)	659
Kpn2I	TCCGGA	1 cut(s)	573
KroI	GCCGGC	1 cut(s)	675
KroNI	GCCGGC	1 cut(s)	677
Kzo9I	GATC	3 cut(s)	327, 401, 504
LguI	GCTCTTC	1 cut(s)	55
LmnI	GCTCC	4 cut(s)	65, 174, 576, 589
Lsp1109I	GCAGC	5 cut(s)	162, 377, 413, 453, 475
MaeI	CTAG	1 cut(s)	696
MaeII	ACGT	1 cut(s)	86
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	3 cut(s)	329, 403, 506
MboI	GATC	3 cut(s)	327, 401, 504
MboII	GAAGA	9 cut(s)	42, 220, 262, 343, 346, 349, 367, 451, 589
MhlI	GDGCHC	2 cut(s)	573, 635
MluCI	AATT	2 cut(s)	160, 452
Mly113I	GGCGCC	1 cut(s)	396
MroI	TCCGGA	1 cut(s)	573
MroNI	GCCGGC	1 cut(s)	675
MslI	CAYNNNNRTG	2 cut(s)	41, 141
MspA1I	CMGCKG	1 cut(s)	466
MspI	CCGG	5 cut(s)	234, 492, 562, 574, 676
MspR9I	CCNGG	3 cut(s)	221, 493, 520
MvaI	CCWGG	2 cut(s)	221, 520
MvnI	CGCG	3 cut(s)	13, 406, 622
MwoI	GCNNNNNNNGC	4 cut(s)	10, 12, 426, 432
NaeI	GCCGGC	1 cut(s)	677
NarI	GGCGCC	1 cut(s)	396
NciI	CCSGG	1 cut(s)	493
NcoI	CCATGG	1 cut(s)	447
NdeII	GATC	3 cut(s)	327, 401, 504
NgoMIV	GCCGGC	1 cut(s)	675
NlaIII	CATG	2 cut(s)	46, 451
NlaIV	GGNNCC	7 cut(s)	61, 238, 397, 585, 632, 660, 661
NmeAIII	GCCGAG	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	533
PciSI	GCTCTTC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PdiI	GCCGGC	1 cut(s)	677
PfeI	GAWTC	1 cut(s)	703
PflFI	GACNNNGTC	1 cut(s)	493
PkrI	GCNGC	9 cut(s)	149, 152, 367, 392, 395, 428, 465, 468, 674
Ple19I	CGATCG	1 cut(s)	404
PluTI	GGCGCC	1 cut(s)	399
PpuMI	RGGWCCY	1 cut(s)	659
Psp124BI	GAGCTC	1 cut(s)	573
Psp5II	RGGWCCY	1 cut(s)	659
Psp6I	CCWGG	2 cut(s)	219, 518
PspFI	CCCAGC	1 cut(s)	654
PspGI	CCWGG	2 cut(s)	219, 518
PspN4I	GGNNCC	7 cut(s)	61, 238, 397, 585, 632, 660, 661
PspPI	GGNCC	3 cut(s)	223, 564, 659
PspPPI	RGGWCCY	1 cut(s)	659
PstI	CTGCAG	1 cut(s)	471
PsyI	GACNNNGTC	1 cut(s)	493
PvuI	CGATCG	1 cut(s)	404
PvuII	CAGCTG	1 cut(s)	466
RseI	CAYNNNNRTG	2 cut(s)	41, 141
Rsr2I	CGGWCCG	1 cut(s)	564
RsrII	CGGWCCG	1 cut(s)	564
SacI	GAGCTC	1 cut(s)	573
SapI	GCTCTTC	1 cut(s)	55
SatI	GCNGC	9 cut(s)	148, 151, 366, 391, 394, 427, 464, 467, 673
Sau3AI	GATC	3 cut(s)	327, 401, 504
Sau96I	GGNCC	3 cut(s)	223, 564, 659
ScrFI	CCNGG	3 cut(s)	221, 493, 520
SduI	GDGCHC	2 cut(s)	573, 635
SetI	ASST	8 cut(s)	89, 207, 242, 254, 315, 468, 573, 648
SfcI	CTRYAG	1 cut(s)	467
SfoI	GGCGCC	1 cut(s)	397
SinI	GGWCC	3 cut(s)	223, 564, 659
SmiMI	CAYNNNNRTG	2 cut(s)	41, 141
Sse9I	AATT	2 cut(s)	160, 452
SspDI	GGCGCC	1 cut(s)	395
SspMI	CTAG	1 cut(s)	696
SstI	GAGCTC	1 cut(s)	573
StyD4I	CCNGG	3 cut(s)	219, 491, 518
StyI	CCWWGG	1 cut(s)	447
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	5 cut(s)	201, 381, 456, 507, 701
TasI	AATT	2 cut(s)	160, 452
TauI	GCSGC	4 cut(s)	150, 368, 396, 675
TfiI	GAWTC	1 cut(s)	703
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	5 cut(s)	150, 390, 426, 463, 466
Tsp45I	GTSAC	1 cut(s)	533
TspGWI	ACGGA	3 cut(s)	90, 488, 726
Tth111I	GACNNNGTC	1 cut(s)	493
VpaK11BI	GGWCC	3 cut(s)	223, 564, 659
XapI	RAATTY	1 cut(s)	452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XspI	CTAG	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.