Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002458

Physical Location & Seq

Genomic Coordinates Reverse (-)

37503970 .. 37507358

Gene Structure 3389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG215600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGAATTCGATTTGCAGCTGCAGACGGAGGAGTGTGTCAAGACCGGGTCTAAGGAGATCGATAAGTTGCCCTGGAAGGGCGGGAGTGACACCAATCCCGATTACGAGTGTCTCCGCTCCGAGCTCCGGAAGATGGCTCCGCACAATGGCCGTGCCGTCCTGCTCTTTCGGGCGCGGTGTGGCTGCCCCGTCGCCAAACTTGAAGGCTGGGGTCCCAAGCGAGGCCGCCGGCATAAGAAGGCTCTGGCTAGTACGATTCCCAACGGGGGAGACAATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

93

Amino Acids

10.42

Weight (kDa)

9.42

Isoelectric Point (pI)

65.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06180 AT3G06180 AT5G19025 AT5G19025
fragaria_vesca	FvH4_4g14400
malus_domestica	MD13G1182400.v1.1 MD16G1182900.v1.1
prunus_persica	Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1 Prupe.1G150300_v2.0.a1
pyrus_communis	pycom13g15740 pycom16g15350
rosa_chinensis	RchiOBHm_Chr4g0415911 RchiOBHm_Chr4g0418491
rosa_laevigata	RLG00000001579 RLG00000007860 RLG00000024722
rosa_multiflora	Rmu_co8196536.1_g000001 Rmu_co8421341.1_g000001 Rmu_sc0000103.1_g000016
rosa_roxburghii	Rroxscaffold_4G00328940 Rroxscaffold_5G00361720
rosa_rugosa	Rorug01G0137900.1 Rorug04G0065100 Rorug04G0153600 Rorug04G0153700 Rorug04G0153800 Rorug04G0382100 Rorug05G0462200 RorugMtG0004500.1
rosa_samantha	Rh2DG562600 Rh4AG214800 Rh4BG215600 Rh4CG226500 Rh4DG213400 Rh7BG382200
rosa_wichuraiana	Rw0G010060 Rw5G025090 Rw7G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	117
AccII	CGCG	1 cut(s)	175
AccIII	TCCGGA	1 cut(s)	126
AciI	CCGC	5 cut(s)	81, 115, 140, 175, 226
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	5
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	6 cut(s)	77, 126, 133, 146, 221, 266
AgsI	TTSAA	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	2 cut(s)	19, 124
AluI	AGCT	2 cut(s)	19, 124
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	2 cut(s)	116, 264
Aor13HI	TCCGGA	1 cut(s)	126
AoxI	GGCC	2 cut(s)	148, 223
ApeKI	GCWGC	3 cut(s)	16, 19, 183
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	3 cut(s)	6, 28, 170
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	2 cut(s)	135, 140
BciT130I	CCWGG	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	2 cut(s)	116, 264
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	20
BisI	GCNGC	4 cut(s)	17, 20, 184, 226
BlsI	GCNGC	4 cut(s)	18, 21, 185, 227
Bme1390I	CCNGG	2 cut(s)	46, 73
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	3 cut(s)	138, 213, 214
BmrFI	CCNGG	2 cut(s)	46, 73
BpuMI	CCSGG	1 cut(s)	46
Bsa29I	ATCGAT	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	6 cut(s)	77, 126, 133, 146, 221, 266
Bse118I	RCCGGY	1 cut(s)	228
BseAI	TCCGGA	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	73
BseCI	ATCGAT	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	71
BseLI	CCNNNNNNNGG	6 cut(s)	77, 126, 133, 146, 221, 266
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	3 cut(s)	6, 28, 170
BseYI	CCCAGC	1 cut(s)	207
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	2 cut(s)	150, 225
BshVI	ATCGAT	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	3 cut(s)	45, 127, 229
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	6 cut(s)	77, 126, 133, 146, 221, 266
BsmAI	GTCTC	2 cut(s)	116, 264
BsmFI	GGGAC	1 cut(s)	198
BsnI	GGCC	2 cut(s)	150, 225
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp13I	TCCGGA	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	5 cut(s)	81, 115, 140, 175, 226
BspANI	GGCC	2 cut(s)	150, 225
BspDI	ATCGAT	1 cut(s)	60
BspEI	TCCGGA	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	175
BspLI	GGNNCC	3 cut(s)	138, 213, 214
BspMAI	CTGCAG	1 cut(s)	24
BsrBI	CCGCTC	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	228
BssAI	RCCGGY	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	51
BstFNI	CGCG	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	1 cut(s)	60
BstMAI	GTCTC	2 cut(s)	116, 264
BstMBI	GATC	1 cut(s)	57
BstNI	CCWGG	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	44, 71
BstSFI	CTRYAG	1 cut(s)	20
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	3 cut(s)	6, 28, 170
Bsu15I	ATCGAT	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	150, 225
BsuTUI	ATCGAT	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	230
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	212
ClaI	ATCGAT	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	252
CviJI	RGCY	9 cut(s)	19, 124, 137, 150, 183, 207, 225, 242, 248
CviKI_1	RGCY	9 cut(s)	19, 124, 137, 150, 183, 207, 225, 242, 248
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
EaeI	YGGCCR	1 cut(s)	148
Ecl136II	GAGCTC	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	126
FaiI	YATR	1 cut(s)	234
FaqI	GGGAC	1 cut(s)	198
FauI	CCCGC	1 cut(s)	74
Fnu4HI	GCNGC	4 cut(s)	17, 20, 184, 226
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	4 cut(s)	17, 20, 184, 226
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	4 cut(s)	17, 20, 184, 226
GsaI	CCCAGC	1 cut(s)	211
HaeIII	GGCC	2 cut(s)	150, 225
HapII	CCGG	3 cut(s)	45, 127, 229
HhaI	GCGC	1 cut(s)	175
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	3 cut(s)	45, 127, 229
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	3 cut(s)	40, 98, 127
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	3 cut(s)	70, 197, 232
HpyCH4V	TGCA	2 cut(s)	16, 22
HpyF3I	CTNAG	1 cut(s)	51
HspAI	GCGC	1 cut(s)	173
KflI	GGGWCCC	1 cut(s)	212
Kpn2I	TCCGGA	1 cut(s)	126
KroI	GCCGGC	1 cut(s)	228
KroNI	GCCGGC	1 cut(s)	230
Kzo9I	GATC	1 cut(s)	57
LmnI	GCTCC	3 cut(s)	122, 129, 142
LpnPI	CCDG	8 cut(s)	58, 58, 85, 140, 173, 193, 230, 242
Lsp1109I	GCAGC	3 cut(s)	6, 28, 170
MaeI	CTAG	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	1 cut(s)	59
MbiI	CCGCTC	1 cut(s)	117
MboI	GATC	1 cut(s)	57
MboII	GAAGA	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	1 cut(s)	5
MnlI	CCTC	2 cut(s)	22, 215
MroI	TCCGGA	1 cut(s)	126
MroNI	GCCGGC	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	3 cut(s)	45, 127, 229
MspR9I	CCNGG	2 cut(s)	46, 73
MvaI	CCWGG	1 cut(s)	73
MvnI	CGCG	1 cut(s)	175
NaeI	GCCGGC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	46
NdeII	GATC	1 cut(s)	57
NgoMIV	GCCGGC	1 cut(s)	228
NlaIV	GGNNCC	3 cut(s)	138, 213, 214
NmuCI	GTSAC	1 cut(s)	86
PdiI	GCCGGC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	256
PflFI	GACNNNGTC	1 cut(s)	46
PkrI	GCNGC	4 cut(s)	18, 21, 185, 227
PpuMI	RGGWCCY	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	71
PspN4I	GGNNCC	3 cut(s)	138, 213, 214
PspPI	GGNCC	1 cut(s)	212
PspPPI	RGGWCCY	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	24
PsyI	GACNNNGTC	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	126
SatI	GCNGC	4 cut(s)	17, 20, 184, 226
Sau3AI	GATC	1 cut(s)	57
Sau96I	GGNCC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	46, 73
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	2 cut(s)	21, 126
SfcI	CTRYAG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	212
Sse9I	AATT	1 cut(s)	5
SsiI	CCGC	5 cut(s)	81, 115, 140, 175, 226
SspMI	CTAG	1 cut(s)	249
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	44, 71
TaqI	TCGA	2 cut(s)	9, 60
TasI	AATT	1 cut(s)	5
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	3 cut(s)	16, 19, 183
Tsp45I	GTSAC	1 cut(s)	86
TspGWI	ACGGA	1 cut(s)	41
Tth111I	GACNNNGTC	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	212
XapI	RAATTY	1 cut(s)	5
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.