Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001630.1

Orthogroup ID

OG0011553

Physical Location & Seq

Genomic Coordinates Reverse (-)

215609 .. 218822

Gene Structure 3214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001630.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atggcgtcgttgacgacgatgataacagttccgtcgaattgcccctcccttggacttcccatgcacttttctgtgagaaaacactgcacttgtgtcgttgcttatcaaaatgccgccacaaaaatggggtcatatagctctcaacataatcttttcactcgtgtgcatgagattggtattgctcgcttatccaggccgatattcgcagccggttcaggtttagaagcatccattgcggaagaaaatgtgataaagttgaaaaccacaaagattgttgtcgagtcccaagatgagaatagtatacaagttagagtggacgtggctggggatgaaacgcaaaaagtttttgatcaggttttgacaaatttggcacgcacagctccaccagttccaaaaagctttctcttggatatacttggtaaagagcgtgtcacaaagtttgtcatacaagaattagtaagctctgctatggctgattatgtaaagcaggaaaatctgactgtgaaggaaaacaagatcaacaccacccaatcggcagaagaactccaatcgttgttcactccggggaatgaatttgcatttaatgctatagttgaacttgaaaagtcagaaattgaaaagccaacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trigger_N

Protein Analysis

209

Amino Acids

22.99

Weight (kDa)

5.85

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011553)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10500 FvH4_4g10500 FvH4_4g10500 FvH4_4g10500 FvH4_4g10500 FvH4_4g10500
malus_domestica	MD08G1249800.v1.1
prunus_persica	Prupe.1G586900_v2.0.a1 Prupe.1G586900_v2.0.a1
pyrus_communis	pycom08g21620
rosa_chinensis	RchiOBHm_Chr4g0406061
rosa_laevigata	RLG00000008799
rosa_multiflora	Rmu_sc0001630.1_g000028
rosa_roxburghii	Rroxscaffold_5G00350800
rosa_rugosa	Rorug04G0065100
rosa_samantha	Rh4AG135600 Rh4BG132700 Rh4CG143500 Rh4DG130700
rosa_wichuraiana	Rw4G011050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	301
AciI	CCGC	2 cut(s)	114, 236
AcsI	RAATTY	2 cut(s)	364, 572
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	4 cut(s)	259, 596, 602, 617
AjiI	CACGTC	1 cut(s)	319
AjnI	CCWGG	1 cut(s)	191
AleI	CACNNNNGTG	1 cut(s)	161
AluBI	AGCT	4 cut(s)	138, 380, 399, 462
AluI	AGCT	4 cut(s)	138, 380, 399, 462
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	2 cut(s)	364, 572
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AsuC2I	CCSGG	1 cut(s)	564
BauI	CACGAG	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	218
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BciT130I	CCWGG	1 cut(s)	193
BclI	TGATCA	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	564
BfmI	CTRYAG	1 cut(s)	588
BisI	GCNGC	2 cut(s)	114, 207
BlsI	GCNGC	2 cut(s)	115, 208
Bme1390I	CCNGG	2 cut(s)	193, 564
BmgBI	CACGTC	1 cut(s)	319
BmrFI	CCNGG	2 cut(s)	193, 564
BmsI	GCATC	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	564
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	49, 563
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	386
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	49, 563
BseGI	GGATG	2 cut(s)	227, 334
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	386
BseXI	GCAGC	1 cut(s)	218
BseYI	CCCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	70
BshFI	GGCC	1 cut(s)	196
BsiSI	CCGG	2 cut(s)	210, 563
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	349, 516
BspACI	CCGC	2 cut(s)	114, 236
BspANI	GGCC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	386
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	2 cut(s)	49, 563
BssMI	GATC	2 cut(s)	349, 516
BssNAI	GTATAC	1 cut(s)	302
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	49
Bst1107I	GTATAC	1 cut(s)	302
Bst2BI	CACGAG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	28, 502
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	2 cut(s)	233, 584
BstC8I	GCNNGC	2 cut(s)	184, 373
BstF5I	GGATG	2 cut(s)	227, 334
BstKTI	GATC	2 cut(s)	352, 519
BstMBI	GATC	2 cut(s)	349, 516
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 377, 584
BstNI	CCWGG	1 cut(s)	193
BstSCI	CCNGG	2 cut(s)	191, 562
BstSFI	CTRYAG	1 cut(s)	588
BstV1I	GCAGC	1 cut(s)	218
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstZ17I	GTATAC	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	196
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	227, 334
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	2 cut(s)	184, 373
Cfr10I	RCCGGY	1 cut(s)	209
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviAII	CATG	2 cut(s)	61, 167
CviJI	RGCY	9 cut(s)	138, 196, 209, 323, 380, 399, 462, 473, 622
CviKI_1	RGCY	9 cut(s)	138, 196, 209, 323, 380, 399, 462, 473, 622
DpnI	GATC	2 cut(s)	351, 518
DpnII	GATC	2 cut(s)	349, 516
Eco130I	CCWWGG	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	2 cut(s)	64, 170
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	2 cut(s)	60, 166
FbaI	TGATCA	1 cut(s)	349
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	2 cut(s)	114, 207
FokI	GGATG	2 cut(s)	214, 341
Fsp4HI	GCNGC	2 cut(s)	114, 207
GluI	GCNGC	2 cut(s)	114, 207
GsaI	CCCAGC	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	196
HapII	CCGG	2 cut(s)	210, 563
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	64, 170
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	397
HinfI	GANTC	1 cut(s)	281
HpaII	CCGG	2 cut(s)	210, 563
Hpy166II	GTNNAC	4 cut(s)	12, 302, 316, 558
Hpy188I	TCNGA	2 cut(s)	498, 610
Hpy8I	GTNNAC	4 cut(s)	12, 302, 316, 558
Hpy99I	CGWCG	3 cut(s)	10, 19, 37
HpyAV	CCTTC	1 cut(s)	499
HpyCH4III	ACNGT	2 cut(s)	28, 502
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	4 cut(s)	64, 87, 166, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 377, 584
HpySE526I	ACGT	1 cut(s)	318
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	64, 170
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	2 cut(s)	349, 516
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	9 cut(s)	178, 201, 205, 223, 309, 338, 399, 473, 576
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	1 cut(s)	236
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	2 cut(s)	351, 518
MboI	GATC	2 cut(s)	349, 516
MboII	GAAGA	2 cut(s)	251, 551
MluCI	AATT	5 cut(s)	37, 364, 452, 572, 612
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	1 cut(s)	55
MseI	TTAA	1 cut(s)	582
MslI	CAYNNNNRTG	2 cut(s)	122, 161
MspI	CCGG	2 cut(s)	210, 563
MspR9I	CCNGG	2 cut(s)	193, 564
MvaI	CCWGG	1 cut(s)	193
MwoI	GCNNNNNNNGC	3 cut(s)	233, 377, 584
NciI	CCSGG	1 cut(s)	564
NdeII	GATC	2 cut(s)	349, 516
NlaIII	CATG	2 cut(s)	64, 170
NmuCI	GTSAC	1 cut(s)	430
OliI	CACNNNNGTG	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	115, 208
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	191
RseI	CAYNNNNRTG	2 cut(s)	122, 161
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	2 cut(s)	114, 207
Sau3AI	GATC	2 cut(s)	349, 516
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	2 cut(s)	193, 564
SetI	ASST	8 cut(s)	140, 220, 321, 357, 382, 401, 464, 629
SfaNI	GCATC	1 cut(s)	236
SfcI	CTRYAG	1 cut(s)	588
SmiMI	CAYNNNNRTG	2 cut(s)	122, 161
Sse9I	AATT	5 cut(s)	37, 364, 452, 572, 612
SsiI	CCGC	2 cut(s)	114, 236
StyD4I	CCNGG	2 cut(s)	191, 562
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	2 cut(s)	28, 502
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	35, 279
TasI	AATT	5 cut(s)	37, 364, 452, 572, 612
TauI	GCSGC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	1 cut(s)	89
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	2 cut(s)	345, 585
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	1 cut(s)	89
XapI	RAATTY	2 cut(s)	364, 572
XmiI	GTMKAC	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.