Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006842

Physical Location & Seq

Genomic Coordinates Forward (+)

5974612 .. 5979642

Gene Structure 5031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G051600.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGTTCACTCTTTTAAGGTTGTTGATGACGGGTTTGTTGTCAATCATCAATGTGTACGCATCCCAATTGAAGCTGATATTCAGGAGGAGAAGTACACTGAGATATTATTCTTCTGTGAATTCAGCACTATCTTCCATAATTCTGTCAGAGGATGAAACCTCAACACTTGAAGATACCGTTGCTGCTGATAATGGTATTTTTCTGAGTGCAAAAAGCTATCCTACTGACTTTAGAGGAATAAACGAACTTTATTGTGGTGAAGACGGCGTTTGTGAGCCTGTTGACACTGGTTTCTTGTTTTCCATTAATGAGAGACCAGATGAAGATGAAATGAAAAGATTAATGTTAATACTCGCAAAGCGTGGATGGAATCTTGGTTGTCAAAATGGGTATAATATCTATCTGAATCAGTTGAACACTATAGAGCTTTTGAACGATCTGTTTGAGGAGAGTTTCGATGCTAAACTTGTTCTATACTTCTTCAAGTGGTCAGAATGCTGTTCTGGATCAAAGCATACATTACAAACCATATGTAGAATGATCCATATTTTGGTTTCTGGGAACCTGAATCATAGAGCAGTGGATCTGATATTGCGTCTTGTGAGAAATCATGGTGACGAGGAGTCATGTAATTCATTGCTAGAAGTCCTTGATGAAACCCATAGCGAAATAAGGGTTTTAGAAACCACATGTAGCATGCTTGTCAATGGTTATATTCAGGAAGGCATGGTGAACATGGCTTTAAAAATAGCATGTCAAATGAAGCACCTAAACATCTTTCCTTCAAATGGGGTGTGTAACTCACTACTGCAGGCATTATTAGGATCAAAGCAGTTGGAATTGGCATGGGATTTTCTGGAAGTTATGCGGACAAGAGGGATGGGTTTAAATGCAGCTATGATGAGCTTATTCATTAATAAGTACTGTAGTGAGGGTGATCTGGAAAGTGGTTGGAAGTTGCTCTTGGAAATGAAAAATTATGGGATTCAACCTGATGTGGTTTCATTTACAATTGTTATTAACTCACTTTGCAAGATGTCTTATCTGAATGAAGCCACCGCTTTATTGTTTAAGATGACTCAGTTGGGTATTTCTCCTGATCCAGTTCTACTTAGTTCAATTATTGATGGTCACTGTAAGCTGGGGCAGACAGAGGTAGCACTAAGCATATTGAAGATTTTCAATACTCCCCTCAATATTTTCATATACAATAGCTTCATTTCAAAGTTATGCACAGATGGTAATATGGCTGAAGCTTCTAGCCTGTTTCATGAGATGTCTATGTTGGGCTTGCTCCCCGATTGCTTTTGTTACTCTACTATAATTGATGGATACTGCAAAGTGAGAGACATTGATAGAGCTTTTCAGTATTTTGGGAAAATGTTAAAAAATGGAATCACACCATGTGTTACCACATACACATCCCTCATTGATGCTTATTTGAAGTCTGGAAACATGGAAATGGCAGAATATTCGTTTCACAAGATGATTTCGGAGGGTTTGGCACCTGATATTGTTACATTCAACACCTTAATGGATGGCTTTGGTAGGAAGGGACACTTACAAAAGGTTTTTGGGCTTTTAGATATGATGAATTCTTCCAATGTTTCACCTGATATTGTGACATATAACACTCTCATTCATAGTCTAGTGACAAGAGGATTTGTAATCGAGGCAAAAGAAATTTTGTTTGAGTTAATCAAAAGGGGTTTCTCTCTGGATGTGGTCACATTCACCAACCTTATTGACGGGTTTTCAAAGAAGGGGAACTTTGAGGAAGCCTTTTTTGTGTGGTTCTACATGAGCGAGCATGATGTGAAACCTGATGTAGTGACATGCAGTGCTCTTCTCAATGGATACTGTAGAGAGCGTCGAATAGAAGAAGCTAATGTTTTGTTTCACAAGATGCTTAATATTGGATTACGTCCAGATCTGATACTGTACAACACTCTGATTCATGGGCATTGTAGTTTTGGGAGCATGGATGATGCATGCACCTTGATAAGTATGATGATTGAACATGGTATCTTTCCTAATAACATTACTCACCAGGCACTTGTCCTTGGGTTAAAAAAGAGGGTAATGAATCCTGTAGAAACTGCAAATCTTAAGTTGCAACAGATACTGCTCAAATATGGTATTCATGTTGATGTTGATGAATATCTGAGAGAGCAACCAGGAAGCTGCAAGCAATTACCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

735

Amino Acids

82.83

Weight (kDa)

5.47

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19280 AT2G19280 AT2G19280 AT2G19280
fragaria_vesca	FvH4_7g04580
prunus_persica	Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0330001
rosa_laevigata	RLG00000029844
rosa_multiflora	Rmu_sc0000499.1_g000004 Rmu_sc0009365.1_g000009 Rmu_sc0009365.1_g000021 Rmu_sc0031998.1_g000001
rosa_roxburghii	Rroxscaffold_4G00320440
rosa_rugosa	Rorug01G0085200 Rorug01G0085300
rosa_samantha	Rh1AG103500 Rh1BG081900 Rh1CG098500 Rh1DG105900
rosa_wichuraiana	Rw1G008230 Rw1G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1504
AccB7I	CCANNNNNTGG	1 cut(s)	550
AciI	CCGC	2 cut(s)	868, 1059
AclWI	GGATC	5 cut(s)	514, 535, 591, 832, 1094
AcsI	RAATTY	3 cut(s)	118, 1594, 1683
AcuI	CTGAAG	1 cut(s)	1272
AdeI	CACNNNGTG	1 cut(s)	1406
AfaI	GTAC	4 cut(s)	56, 94, 923, 1943
AfiI	CCNNNNNNNGG	2 cut(s)	550, 788
AflII	CTTAAG	1 cut(s)	2108
AflIII	ACRYGT	1 cut(s)	689
AhdI	GACNNNNNGTC	1 cut(s)	622
AjnI	CCWGG	2 cut(s)	2049, 2176
AjuI	GAANNNNNNNTTGG	2 cut(s)	947, 979
Alw21I	GWGCWC	1 cut(s)	1846
Alw26I	GTCTC	2 cut(s)	307, 1341
AlwI	GGATC	5 cut(s)	514, 535, 591, 832, 1094
AlwNI	CAGNNNCTG	1 cut(s)	2125
ApeKI	GCWGC	3 cut(s)	182, 893, 2184
ApoI	RAATTY	3 cut(s)	118, 1594, 1683
AseI	ATTAAT	3 cut(s)	306, 341, 915
Asp700I	GAANNNNTTC	1 cut(s)	1178
AsuHPI	GGTGA	7 cut(s)	269, 626, 742, 947, 1602, 1726, 2039
BanI	GGYRCC	1 cut(s)	1504
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	1846
BbvI	GCAGC	3 cut(s)	169, 905, 2171
BccI	CCATC	6 cut(s)	360, 874, 1121, 1232, 1322, 1532
BceAI	ACGGC	1 cut(s)	280
BcgI	CGANNNNNNTGC	2 cut(s)	1455, 1489
BciT130I	CCWGG	2 cut(s)	2051, 2178
BciVI	GTATCC	2 cut(s)	1325, 1850
BcoDI	GTCTC	2 cut(s)	307, 1341
BfaI	CTAG	3 cut(s)	641, 1260, 1649
BfmI	CTRYAG	5 cut(s)	420, 809, 925, 1861, 2091
BfrI	CTTAAG	1 cut(s)	2108
BfuI	GTATCC	2 cut(s)	1325, 1850
BglII	AGATCT	1 cut(s)	1930
BisI	GCNGC	3 cut(s)	183, 894, 2185
BlsI	GCNGC	3 cut(s)	184, 895, 2186
BmcAI	AGTACT	1 cut(s)	923
Bme1390I	CCNGG	2 cut(s)	2051, 2178
BmeRI	GACNNNNNGTC	1 cut(s)	622
BmiI	GGNNCC	2 cut(s)	563, 1506
BmrFI	CCNGG	2 cut(s)	2051, 2178
BmsI	GCATC	5 cut(s)	68, 448, 1423, 1896, 1978
BpiI	GAAGAC	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	2160
BsaI	GGTCTC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	2062
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bsc4I	CCNNNNNNNGG	2 cut(s)	550, 788
Bse1I	ACTGG	2 cut(s)	292, 1103
Bse3DI	GCAATG	1 cut(s)	635
Bse8I	GATNNNNATC	1 cut(s)	2160
BseBI	CCWGG	2 cut(s)	2051, 2178
BseDI	CCNNGG	1 cut(s)	2062
BseGI	GGATG	8 cut(s)	59, 157, 371, 885, 1421, 1543, 1726, 1990
BseJI	GATNNNNATC	1 cut(s)	2160
BseLI	CCNNNNNNNGG	2 cut(s)	550, 788
BseMI	GCAATG	1 cut(s)	635
BseMII	CTCAG	4 cut(s)	89, 194, 1094, 2156
BseNI	ACTGG	2 cut(s)	292, 1103
BseRI	GAGGAG	3 cut(s)	100, 461, 635
BseXI	GCAGC	3 cut(s)	169, 905, 2171
BseYI	CCCAGC	1 cut(s)	1141
BshNI	GGYRCC	1 cut(s)	1504
BsiHKAI	GWGCWC	1 cut(s)	1846
BslFI	GGGAC	1 cut(s)	1569
BslI	CCNNNNNNNGG	2 cut(s)	550, 788
BsmAI	GTCTC	2 cut(s)	307, 1341
BsmFI	GGGAC	1 cut(s)	1569
BsmI	GAATGC	1 cut(s)	500
Bso31I	GGTCTC	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	1846
Bsp1407I	TGTACA	1 cut(s)	1941
Bsp143I	GATC	8 cut(s)	436, 506, 540, 583, 824, 937, 1099, 1930
BspACI	CCGC	2 cut(s)	868, 1059
BspCNI	CTCAG	4 cut(s)	90, 195, 1093, 2157
BspHI	TCATGA	1 cut(s)	1270
BspLI	GGNNCC	2 cut(s)	563, 1506
BspMAI	CTGCAG	1 cut(s)	813
BspPI	GGATC	5 cut(s)	514, 535, 591, 832, 1094
BspQI	GCTCTTC	1 cut(s)	1851
BspT107I	GGYRCC	1 cut(s)	1504
BspTI	CTTAAG	1 cut(s)	2108
BspTNI	GGTCTC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	635
BsrGI	TGTACA	1 cut(s)	1941
BsrI	ACTGG	2 cut(s)	292, 1103
BssECI	CCNNGG	1 cut(s)	2062
BssMI	GATC	8 cut(s)	436, 506, 540, 583, 824, 937, 1099, 1930
BssT1I	CCWWGG	1 cut(s)	2062
Bst2UI	CCWGG	2 cut(s)	2051, 2178
Bst4CI	ACNGT	5 cut(s)	178, 926, 1136, 1862, 1941
Bst6I	CTCTTC	1 cut(s)	1851
BstAFI	CTTAAG	1 cut(s)	2108
BstAUI	TGTACA	1 cut(s)	1941
BstC8I	GCNNGC	6 cut(s)	698, 813, 1292, 1808, 1993, 2189
BstDEI	CTNAG	6 cut(s)	98, 203, 1080, 1112, 1163, 2165
BstF5I	GGATG	8 cut(s)	59, 157, 371, 885, 1421, 1543, 1726, 1990
BstKTI	GATC	8 cut(s)	439, 509, 543, 586, 827, 940, 1102, 1933
BstMAI	GTCTC	2 cut(s)	307, 1341
BstMBI	GATC	8 cut(s)	436, 506, 540, 583, 824, 937, 1099, 1930
BstNI	CCWGG	2 cut(s)	2051, 2178
BstNSI	RCATGY	5 cut(s)	693, 700, 756, 1839, 1995
BstSCI	CCNGG	2 cut(s)	2049, 2176
BstSFI	CTRYAG	5 cut(s)	420, 809, 925, 1861, 2091
BstV1I	GCAGC	3 cut(s)	169, 905, 2171
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	2 cut(s)	583, 1930
BstYI	RGATCY	2 cut(s)	583, 1930
BsuI	GTATCC	2 cut(s)	1325, 1850
BtsCI	GGATG	8 cut(s)	59, 157, 371, 885, 1421, 1543, 1726, 1990
BtsI	GCAGTG	2 cut(s)	585, 1846
BtsIMutI	CAGTG	5 cut(s)	95, 285, 585, 1132, 1846
Cac8I	GCNNGC	6 cut(s)	698, 813, 1292, 1808, 1993, 2189
CaiI	CAGNNNCTG	1 cut(s)	2125
CciI	TCATGA	1 cut(s)	1270
CseI	GACGC	2 cut(s)	584, 1859
Csp6I	GTAC	4 cut(s)	55, 93, 922, 1942
CviQI	GTAC	4 cut(s)	55, 93, 922, 1942
DdeI	CTNAG	6 cut(s)	98, 203, 1080, 1112, 1163, 2165
DpnI	GATC	8 cut(s)	438, 508, 542, 585, 826, 939, 1101, 1932
DpnII	GATC	8 cut(s)	436, 506, 540, 583, 824, 937, 1099, 1930
DraI	TTTAAA	2 cut(s)	744, 888
DraIII	CACNNNGTG	1 cut(s)	1406
DriI	GACNNNNNGTC	1 cut(s)	622
Eam1104I	CTCTTC	1 cut(s)	1851
Eam1105I	GACNNNNNGTC	1 cut(s)	622
EarI	CTCTTC	1 cut(s)	1851
Eco130I	CCWWGG	1 cut(s)	2062
Eco31I	GGTCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	1272
EcoRI	GAATTC	2 cut(s)	118, 1594
EcoRII	CCWGG	2 cut(s)	2049, 2176
EcoT14I	CCWWGG	1 cut(s)	2062
EcoT22I	ATGCAT	1 cut(s)	1993
ErhI	CCWWGG	1 cut(s)	2062
FalI	AAGNNNNNCTT	6 cut(s)	947, 979, 1544, 1576, 1754, 1786
FaqI	GGGAC	1 cut(s)	1569
FauNDI	CATATG	1 cut(s)	530
Fnu4HI	GCNGC	3 cut(s)	183, 894, 2185
FokI	GGATG	8 cut(s)	46, 164, 378, 892, 1408, 1550, 1733, 1997
Fsp4HI	GCNGC	3 cut(s)	183, 894, 2185
FspBI	CTAG	3 cut(s)	641, 1260, 1649
GluI	GCNGC	3 cut(s)	183, 894, 2185
GsaI	CCCAGC	1 cut(s)	1145
HgaI	GACGC	2 cut(s)	584, 1859
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	1254
HinfI	GANTC	9 cut(s)	370, 406, 568, 623, 985, 1078, 1395, 1954, 2086
HphI	GGTGA	7 cut(s)	269, 626, 742, 947, 1602, 1726, 2039
Hpy166II	GTNNAC	5 cut(s)	6, 55, 95, 283, 733
Hpy8I	GTNNAC	5 cut(s)	6, 55, 95, 283, 733
Hpy99I	CGWCG	1 cut(s)	1875
HpyAV	CCTTC	4 cut(s)	716, 792, 1546, 1756
HpyCH4III	ACNGT	5 cut(s)	178, 926, 1136, 1862, 1941
HpyCH4IV	ACGT	1 cut(s)	1924
HpyF3I	CTNAG	6 cut(s)	98, 203, 1080, 1112, 1163, 2165
HpySE526I	ACGT	1 cut(s)	1924
Kzo9I	GATC	8 cut(s)	436, 506, 540, 583, 824, 937, 1099, 1930
LguI	GCTCTTC	1 cut(s)	1851
LmnI	GCTCC	2 cut(s)	1299, 1977
Lsp1109I	GCAGC	3 cut(s)	169, 905, 2171
LweI	GCATC	5 cut(s)	68, 448, 1423, 1896, 1978
MaeI	CTAG	3 cut(s)	641, 1260, 1649
MaeII	ACGT	1 cut(s)	1924
MalI	GATC	8 cut(s)	438, 508, 542, 585, 826, 939, 1101, 1932
MboI	GATC	8 cut(s)	436, 506, 540, 583, 824, 937, 1099, 1930
MfeI	CAATTG	2 cut(s)	65, 1011
MflI	RGATCY	2 cut(s)	583, 1930
MhlI	GDGCHC	1 cut(s)	1846
MlyI	GAGTC	2 cut(s)	632, 1072
MmeI	TCCRAC	2 cut(s)	816, 932
Mph1103I	ATGCAT	1 cut(s)	1993
MroXI	GAANNNNTTC	1 cut(s)	1178
MslI	CAYNNNNRTG	4 cut(s)	50, 1460, 1532, 2148
MspCI	CTTAAG	1 cut(s)	2108
MspR9I	CCNGG	2 cut(s)	2051, 2178
MunI	CAATTG	2 cut(s)	65, 1011
Mva1269I	GAATGC	1 cut(s)	500
MvaI	CCWGG	2 cut(s)	2051, 2178
NdeI	CATATG	1 cut(s)	530
NdeII	GATC	8 cut(s)	436, 506, 540, 583, 824, 937, 1099, 1930
NlaIV	GGNNCC	2 cut(s)	563, 1506
NmuCI	GTSAC	6 cut(s)	614, 1130, 1621, 1651, 1726, 1831
NsiI	ATGCAT	1 cut(s)	1993
NspI	RCATGY	5 cut(s)	693, 700, 756, 1839, 1995
PaeI	GCATGC	2 cut(s)	700, 1995
PagI	TCATGA	1 cut(s)	1270
PciI	ACATGT	1 cut(s)	689
PciSI	GCTCTTC	1 cut(s)	1851
PctI	GAATGC	1 cut(s)	500
PdmI	GAANNNNTTC	1 cut(s)	1178
PfeI	GAWTC	7 cut(s)	370, 406, 568, 985, 1395, 1954, 2086
PflMI	CCANNNNNTGG	1 cut(s)	550
PkrI	GCNGC	3 cut(s)	184, 895, 2186
PleI	GAGTC	2 cut(s)	631, 1072
PpsI	GAGTC	2 cut(s)	631, 1072
PscI	ACATGT	1 cut(s)	689
PshBI	ATTAAT	3 cut(s)	306, 341, 915
Psp6I	CCWGG	2 cut(s)	2049, 2176
PspFI	CCCAGC	1 cut(s)	1141
PspGI	CCWGG	2 cut(s)	2049, 2176
PspN4I	GGNNCC	2 cut(s)	563, 1506
PstI	CTGCAG	1 cut(s)	813
PstNI	CAGNNNCTG	1 cut(s)	2125
PsuI	RGATCY	2 cut(s)	583, 1930
RsaI	GTAC	4 cut(s)	56, 94, 923, 1943
RsaNI	GTAC	4 cut(s)	55, 93, 922, 1942
RseI	CAYNNNNRTG	4 cut(s)	50, 1460, 1532, 2148
SapI	GCTCTTC	1 cut(s)	1851
SatI	GCNGC	3 cut(s)	183, 894, 2185
Sau3AI	GATC	8 cut(s)	436, 506, 540, 583, 824, 937, 1099, 1930
ScaI	AGTACT	1 cut(s)	923
SchI	GAGTC	2 cut(s)	632, 1072
ScrFI	CCNGG	2 cut(s)	2051, 2178
SduI	GDGCHC	1 cut(s)	1846
SfaNI	GCATC	5 cut(s)	68, 448, 1423, 1896, 1978
SfcI	CTRYAG	5 cut(s)	420, 809, 925, 1861, 2091
SmiMI	CAYNNNNRTG	4 cut(s)	50, 1460, 1532, 2148
SmlI	CTYRAG	1 cut(s)	2108
SmoI	CTYRAG	1 cut(s)	2108
SphI	GCATGC	2 cut(s)	700, 1995
SsiI	CCGC	2 cut(s)	868, 1059
SspI	AATATT	3 cut(s)	1198, 1472, 1915
SspMI	CTAG	3 cut(s)	641, 1260, 1649
StyD4I	CCNGG	2 cut(s)	2049, 2176
StyI	CCWWGG	1 cut(s)	2062
TaaI	ACNGT	5 cut(s)	178, 926, 1136, 1862, 1941
TaiI	ACGT	1 cut(s)	1927
TaqI	TCGA	3 cut(s)	456, 1671, 1873
TatI	WGTACW	3 cut(s)	92, 921, 1941
TfiI	GAWTC	7 cut(s)	370, 406, 568, 985, 1395, 1954, 2086
TscAI	CASTG	5 cut(s)	102, 292, 585, 1139, 1846
TseFI	GTSAC	6 cut(s)	614, 1130, 1621, 1651, 1726, 1831
TseI	GCWGC	3 cut(s)	182, 893, 2184
Tsp45I	GTSAC	6 cut(s)	614, 1130, 1621, 1651, 1726, 1831
TspRI	CASTG	5 cut(s)	102, 292, 585, 1139, 1846
Van91I	CCANNNNNTGG	1 cut(s)	550
Vha464I	CTTAAG	1 cut(s)	2108
VspI	ATTAAT	3 cut(s)	306, 341, 915
XapI	RAATTY	3 cut(s)	118, 1594, 1683
XceI	RCATGY	5 cut(s)	693, 700, 756, 1839, 1995
XmnI	GAANNNNTTC	1 cut(s)	1178
XspI	CTAG	3 cut(s)	641, 1260, 1649
ZrmI	AGTACT	1 cut(s)	923
Zsp2I	ATGCAT	1 cut(s)	1993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.