Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006842

Physical Location & Seq

Genomic Coordinates Reverse (-)

50060686 .. 50062705

Gene Structure 2020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029844

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1938 bp

ATGTTCAGGACAAGTACAATCAGACCTCTTTCTTCCATCCCTACCTCAAGTAACCAGACAGCAGATGATGATGAAATGAAAAGAATCATGTTAATTCTCGCGAAACGTCCATGGATTCTTGGTTGTCAAAATGGGTATAATGTCTATCGGAATCAGTTCAATGTAATACACATTTTGAACTATTTGTTTGAGGAGAGTTTGGATGCTAATCTTGCTTTATACTTTTTCAAGTGGTTAGAATGTTGCGCCGCATCAAAGCATACAGTTTGGACTGTATGTCGAATGGTACATATTTTGGTTTCTGGGAACTTGAATCATAGAGCAGTGGACCTGCTACTGCGTCTTGTGAGAAATCATTCTGAAGAGGAGACATGTAGTTTGTTACTAGAAGTTCTTTATGGAACCCACAGCGAAAGAAGGGTTTTAAAAACTGTGTGTAGCATGCTAGTTGATCAGTATATTAAGGAAGGCATGGTGAACGTGGCTCTGAATGTAACATATGAAATGAAGCACCTAAACATTTTTCCTTCTGGTGGAGTCTGCAACACTCTGCTGCGAGCATTATTAGAATCAAACCAGTTGGACTTTGCATGGGATTTCTTGGAATTTATGTGGACAAGAGCACTGGGTTTGAATTCTTCTATCATAAGTCTCTTCATTCATAAGTACTGTAGTGAGGGTGATCTGGGAAGTGGTTTCAAGTTGCTTGTTGACATGAAGAAGTATGGGATTCAACCTGATGTTGTTTCATATACAATTGTTATTCATTCCCTTTGCAAGTTGTCTTATTTGAAAGAAGCCACTACTTTATTGTTTAAGATGACTCGGTTGGGTATCTCTGCTGATTCGGTCTTGATTAGTTCAGTTATTGATGGCCACTGCCAGTTGAGACAAACAGCGGCTGCAATTAAGATACTGAAGATCTTCCGTCCTCCCCTCAATATTTTTTTGTACAATAGCTTTACTTCAAAGCTATGTACAGATGGCAACATGTTTGAAGCTTCTGAACTTTTTCTTGAGATGTCTGAGTTTGGCTTGCTCCCAGATTGTGTGTGTTACTCAACCATAATAGGGGGCTACTGCAAAGTGAAAGACATGAATAGAGCTTTTCTGTATTTTGGGAAACTGTTAAAAAGTGGAATTACACCATCTGCTACCACATACACGTTGCTCATCGATGCTTACTGCAAGTCTGGAGATATAGAAATGGCCGAAGATATGTTTCAAGCAATGCTTTCAGAGGGTCTACTACCTGATATTGTGACTTACAACACTTTAATGGATGGCTTCGGAAGGAAGGGACACTTACAAAAGGTTTTTGGGGTCTTAGATATGATGAATTCTTCTAATGTTTCCCCTGATGTTGTTACATATAACACTCTCATTCATAGTCTTGCCACAAGAGGATTTGCCAATGAGGCAAAACAAATCATGTTTGAACTTATCGAAAGGGGTTTCTCCCTGGATGTAGCAGCATTTACTAATGTTATAGACGGGTTTTCAAAGATGGGGAACTTTGAGGAAGTCTTTTTTGTGTGGTTCTGCATGAGTGAGCATGAGGTCAAACCCGATGTAGTGACTTGCAGTGCCCTTCTCAATGGATACTGTAAGAAACATCAAATGGAACAAGCCAATGTTTTATTTCGCAAGATGCTTGATATTGGATTACATCCAGACCTGATACTGTATAACACTTTGATTCGTGGATTTTGTAGTGTTGGAAGCATTGATGATGCTTGCAACTTGATATGTATGATGGTTGAAAATGGTATCCTTCCCAATAACATTACTCACCGGGCACTTGTCCTTGGGTTCGGAAAAAAGAGGGTTAGGAATCCTGATTTAGTGGCAGCTCGTAAATTGCAAAAAATTCTTCTCAGATATGGTATTCATGCTGATTTTGATGAATATTTAAGACCAGAAAGCTGCACCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

646

Amino Acids

73.01

Weight (kDa)

6.53

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	218 - 260	8.3e-12	PPR repeat family
PPR_1	PF12854	243 - 274	2.5e-07	PPR repeat
PPR_2	PF13041	246 - 295	1.2e-07	PPR repeat family
PPR_2	PF13041	314 - 362	1.1e-08	PPR repeat family
PPR_3	PF13812	337 - 396	3.7e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	345 - 370	1.4e-06	PPR repeat
PPR_2	PF13041	348 - 397	4.5e-13	PPR repeat family
PPR_long	PF17177	364 - 481	7.5e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	378 - 431	1.8e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	380 - 411	2.3e-07	PPR repeat
PPR_2	PF13041	383 - 430	7e-15	PPR repeat family
PPR	PF01535	387 - 416	9.6e-09	PPR repeat
PPR_3	PF13812	408 - 463	4.5e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	415 - 446	1.2e-07	PPR repeat
PPR_2	PF13041	418 - 466	4e-16	PPR repeat family
PPR	PF01535	421 - 450	7.6e-06	PPR repeat
TPR_24	PF23276	422 - 509	1.9e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	450 - 477	4.2e-06	PPR repeat
PPR_2	PF13041	489 - 537	1.4e-09	PPR repeat family
PPR_1	PF12854	520 - 551	2.7e-06	PPR repeat
PPR_2	PF13041	523 - 559	6.9e-09	PPR repeat family
PPR_1	PF12854	555 - 586	3.4e-09	PPR repeat
PPR_2	PF13041	558 - 606	7.7e-11	PPR repeat family
PPR	PF01535	562 - 591	5.9e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19280 AT2G19280 AT2G19280 AT2G19280
fragaria_vesca	FvH4_7g04580
prunus_persica	Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0330001
rosa_laevigata	RLG00000029844
rosa_multiflora	Rmu_sc0000499.1_g000004 Rmu_sc0009365.1_g000009 Rmu_sc0009365.1_g000021 Rmu_sc0031998.1_g000001
rosa_roxburghii	Rroxscaffold_4G00320440
rosa_rugosa	Rorug01G0085200 Rorug01G0085300
rosa_samantha	Rh1AG103500 Rh1BG081900 Rh1CG098500 Rh1DG105900
rosa_wichuraiana	Rw1G008230 Rw1G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	339
AccI	GTMKAC	1 cut(s)	1246
AccII	CGCG	1 cut(s)	101
AciI	CCGC	2 cut(s)	249, 899
AcoI	YGGCCR	2 cut(s)	874, 1209
AcsI	RAATTY	4 cut(s)	605, 634, 1339, 1869
AcuI	CTGAAG	2 cut(s)	381, 938
AfaI	GTAC	5 cut(s)	16, 288, 668, 953, 979
AfiI	CCNNNNNNNGG	2 cut(s)	533, 1071
AflIII	ACRYGT	3 cut(s)	371, 990, 1164
AhdI	GACNNNNNGTC	1 cut(s)	276
AjnI	CCWGG	1 cut(s)	1461
AluBI	AGCT	6 cut(s)	960, 973, 1001, 1106, 1853, 1926
AluI	AGCT	6 cut(s)	960, 973, 1001, 1106, 1853, 1926
Alw21I	GWGCWC	1 cut(s)	625
Alw26I	GTCTC	3 cut(s)	362, 656, 883
AlwNI	CAGNNNCTG	1 cut(s)	902
AoxI	GGCC	2 cut(s)	874, 1209
ApeKI	GCWGC	5 cut(s)	553, 902, 1472, 1850, 1926
ApoI	RAATTY	4 cut(s)	605, 634, 1339, 1869
ArsI	GACNNNNNNTTYG	2 cut(s)	361, 393
Asp700I	GAANNNNTTC	4 cut(s)	155, 355, 923, 1011
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	328
AsuC2I	CCSGG	1 cut(s)	1796
AsuHPI	GGTGA	3 cut(s)	487, 692, 1784
AvaII	GGWCC	1 cut(s)	328
BaeGI	GKGCMC	2 cut(s)	1591, 1801
BalI	TGGCCA	1 cut(s)	876
Bbv12I	GWGCWC	1 cut(s)	625
BbvI	GCAGC	5 cut(s)	540, 889, 1484, 1862, 1913
BccI	CCATC	7 cut(s)	44, 866, 977, 1156, 1277, 1501, 1750
BciT130I	CCWGG	1 cut(s)	1463
BciVI	GTATCC	2 cut(s)	1595, 1781
BclI	TGATCA	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	1796
BcoDI	GTCTC	3 cut(s)	362, 656, 883
BfaI	CTAG	2 cut(s)	386, 446
BfmI	CTRYAG	1 cut(s)	670
BfuAI	ACCTGC	1 cut(s)	339
BfuI	GTATCC	2 cut(s)	1595, 1781
BglI	GCCNNNNNGGC	1 cut(s)	1418
BglII	AGATCT	1 cut(s)	921
BisI	GCNGC	7 cut(s)	249, 554, 900, 903, 1473, 1851, 1927
BlsI	GCNGC	7 cut(s)	250, 555, 901, 904, 1474, 1852, 1928
BmcAI	AGTACT	1 cut(s)	668
Bme1390I	CCNGG	2 cut(s)	1463, 1796
Bme18I	GGWCC	1 cut(s)	328
BmeRI	GACNNNNNGTC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	2 cut(s)	1463, 1796
BmrI	ACTGGG	1 cut(s)	635
BmsI	GCATC	5 cut(s)	193, 260, 1168, 1641, 1723
BmuI	ACTGGG	1 cut(s)	635
BpmI	CTGGAG	1 cut(s)	1215
BpuEI	CTTGAG	2 cut(s)	31, 1037
BpuMI	CCSGG	1 cut(s)	1796
Bsa29I	ATCGAT	1 cut(s)	1176
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	3 cut(s)	110, 1461, 1807
Bsc4I	CCNNNNNNNGG	2 cut(s)	533, 1071
Bse1I	ACTGG	3 cut(s)	577, 630, 883
Bse3DI	GCAATG	1 cut(s)	1236
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	1463
BseCI	ATCGAT	1 cut(s)	1176
BseDI	CCNNGG	3 cut(s)	110, 1461, 1807
BseGI	GGATG	5 cut(s)	36, 208, 1288, 1471, 1669
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	2 cut(s)	533, 1071
BseMI	GCAATG	1 cut(s)	1236
BseMII	CTCAG	2 cut(s)	1017, 1891
BseNI	ACTGG	3 cut(s)	577, 630, 883
BseRI	GAGGAG	2 cut(s)	206, 380
BseSI	GKGCMC	2 cut(s)	1591, 1801
BseXI	GCAGC	5 cut(s)	540, 889, 1484, 1862, 1913
BsgI	GTGCAG	1 cut(s)	1912
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	2 cut(s)	876, 1211
BshVI	ATCGAT	1 cut(s)	1176
BsiHKAI	GWGCWC	1 cut(s)	625
BsiSI	CCGG	1 cut(s)	1795
BslFI	GGGAC	1 cut(s)	1314
BslI	CCNNNNNNNGG	2 cut(s)	533, 1071
BsmAI	GTCTC	3 cut(s)	362, 656, 883
BsmFI	GGGAC	1 cut(s)	1314
BsnI	GGCC	2 cut(s)	876, 1211
Bsp1286I	GDGCHC	3 cut(s)	625, 1591, 1801
Bsp1407I	TGTACA	2 cut(s)	951, 977
Bsp143I	GATC	3 cut(s)	451, 682, 921
Bsp19I	CCATGG	1 cut(s)	110
Bsp68I	TCGCGA	1 cut(s)	101
BspACI	CCGC	2 cut(s)	249, 899
BspANI	GGCC	2 cut(s)	876, 1211
BspCNI	CTCAG	2 cut(s)	1018, 1890
BspDI	ATCGAT	1 cut(s)	1176
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	1 cut(s)	403
BspMI	ACCTGC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	1236
BsrGI	TGTACA	2 cut(s)	951, 977
BsrI	ACTGG	3 cut(s)	577, 630, 883
BssECI	CCNNGG	3 cut(s)	110, 1461, 1807
BssMI	GATC	3 cut(s)	451, 682, 921
BssT1I	CCWWGG	2 cut(s)	110, 1807
Bst2UI	CCWGG	1 cut(s)	1463
Bst4CI	ACNGT	7 cut(s)	265, 274, 433, 671, 1128, 1607, 1686
Bst6I	CTCTTC	2 cut(s)	357, 659
BstAUI	TGTACA	2 cut(s)	951, 977
BstC8I	GCNNGC	4 cut(s)	443, 558, 1037, 1738
BstDEI	CTNAG	3 cut(s)	1026, 1327, 1877
BstDSI	CCRYGG	1 cut(s)	110
BstF5I	GGATG	5 cut(s)	36, 208, 1288, 1471, 1669
BstFNI	CGCG	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	3 cut(s)	454, 685, 924
BstMAI	GTCTC	3 cut(s)	362, 656, 883
BstMBI	GATC	3 cut(s)	451, 682, 921
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 1418
BstNI	CCWGG	1 cut(s)	1463
BstNSI	RCATGY	3 cut(s)	375, 445, 994
BstSCI	CCNGG	2 cut(s)	1461, 1794
BstSFI	CTRYAG	1 cut(s)	670
BstSLI	GKGCMC	2 cut(s)	1591, 1801
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	5 cut(s)	540, 889, 1484, 1862, 1913
BstX2I	RGATCY	1 cut(s)	921
BstYI	RGATCY	1 cut(s)	921
Bsu15I	ATCGAT	1 cut(s)	1176
BsuI	GTATCC	2 cut(s)	1595, 1781
BsuRI	GGCC	2 cut(s)	876, 1211
BsuTUI	ATCGAT	1 cut(s)	1176
BtgI	CCRYGG	1 cut(s)	110
BtsCI	GGATG	5 cut(s)	36, 208, 1288, 1471, 1669
BtsI	GCAGTG	3 cut(s)	330, 877, 1591
BtsIMutI	CAGTG	4 cut(s)	330, 623, 877, 1591
BtuMI	TCGCGA	1 cut(s)	101
BveI	ACCTGC	1 cut(s)	339
Cac8I	GCNNGC	4 cut(s)	443, 558, 1037, 1738
CaiI	CAGNNNCTG	1 cut(s)	902
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	328
ClaI	ATCGAT	1 cut(s)	1176
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	5 cut(s)	15, 287, 667, 952, 978
CviQI	GTAC	5 cut(s)	15, 287, 667, 952, 978
DdeI	CTNAG	3 cut(s)	1026, 1327, 1877
DpnI	GATC	3 cut(s)	453, 684, 923
DpnII	GATC	3 cut(s)	451, 682, 921
DraI	TTTAAA	1 cut(s)	426
DriI	GACNNNNNGTC	1 cut(s)	276
EaeI	YGGCCR	2 cut(s)	874, 1209
Eam1104I	CTCTTC	2 cut(s)	357, 659
Eam1105I	GACNNNNNGTC	1 cut(s)	276
EarI	CTCTTC	2 cut(s)	357, 659
Eco130I	CCWWGG	2 cut(s)	110, 1807
Eco47I	GGWCC	1 cut(s)	328
Eco57I	CTGAAG	2 cut(s)	381, 938
EcoRI	GAATTC	2 cut(s)	634, 1339
EcoRII	CCWGG	1 cut(s)	1461
EcoT14I	CCWWGG	2 cut(s)	110, 1807
ErhI	CCWWGG	2 cut(s)	110, 1807
FalI	AAGNNNNNCTT	4 cut(s)	1218, 1250, 1289, 1321
FaqI	GGGAC	1 cut(s)	1314
FauNDI	CATATG	1 cut(s)	499
FbaI	TGATCA	1 cut(s)	451
FblI	GTMKAC	1 cut(s)	1246
Fnu4HI	GCNGC	7 cut(s)	249, 554, 900, 903, 1473, 1851, 1927
FokI	GGATG	5 cut(s)	23, 215, 1295, 1478, 1656
Fsp4HI	GCNGC	7 cut(s)	249, 554, 900, 903, 1473, 1851, 1927
FspBI	CTAG	2 cut(s)	386, 446
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	7 cut(s)	249, 554, 900, 903, 1473, 1851, 1927
GsuI	CTGGAG	1 cut(s)	1215
HaeIII	GGCC	2 cut(s)	876, 1211
HapII	CCGG	1 cut(s)	1795
HgaI	GACGC	1 cut(s)	329
HhaI	GCGC	1 cut(s)	248
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HindIII	AAGCTT	1 cut(s)	999
HpaII	CCGG	1 cut(s)	1795
HphI	GGTGA	3 cut(s)	487, 692, 1784
Hpy166II	GTNNAC	5 cut(s)	328, 478, 615, 712, 1247
Hpy188III	TCNNGA	7 cut(s)	7, 100, 853, 1016, 1194, 1673, 1838
Hpy8I	GTNNAC	5 cut(s)	328, 478, 615, 712, 1247
HpyAV	CCTTC	7 cut(s)	411, 461, 537, 1287, 1291, 1601, 1784
HpyCH4III	ACNGT	7 cut(s)	265, 274, 433, 671, 1128, 1607, 1686
HpyCH4IV	ACGT	3 cut(s)	106, 480, 1166
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 1418
HpyF3I	CTNAG	3 cut(s)	1026, 1327, 1877
HpySE526I	ACGT	3 cut(s)	106, 480, 1166
HspAI	GCGC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	3 cut(s)	451, 682, 921
LmnI	GCTCC	1 cut(s)	1044
Lsp1109I	GCAGC	5 cut(s)	540, 889, 1484, 1862, 1913
LweI	GCATC	5 cut(s)	193, 260, 1168, 1641, 1723
MaeI	CTAG	2 cut(s)	386, 446
MaeII	ACGT	3 cut(s)	106, 480, 1166
MaeIII	GTNAC	7 cut(s)	50, 381, 493, 1055, 1261, 1366, 1576
MalI	GATC	3 cut(s)	453, 684, 923
MboI	GATC	3 cut(s)	451, 682, 921
MfeI	CAATTG	1 cut(s)	756
MflI	RGATCY	1 cut(s)	921
MhlI	GDGCHC	3 cut(s)	625, 1591, 1801
MlsI	TGGCCA	1 cut(s)	876
MluCI	AATT	9 cut(s)	93, 605, 634, 756, 906, 1140, 1339, 1859, 1869
MluNI	TGGCCA	1 cut(s)	876
MlyI	GAGTC	2 cut(s)	546, 817
MmeI	TCCRAC	2 cut(s)	561, 1699
Mox20I	TGGCCA	1 cut(s)	876
MroXI	GAANNNNTTC	4 cut(s)	155, 355, 923, 1011
MscI	TGGCCA	1 cut(s)	876
MseI	TTAA	8 cut(s)	92, 425, 462, 816, 909, 1130, 1277, 1913
MslI	CAYNNNNRTG	1 cut(s)	1277
Msp20I	TGGCCA	1 cut(s)	876
MspA1I	CMGCKG	1 cut(s)	899
MspI	CCGG	1 cut(s)	1795
MspR9I	CCNGG	2 cut(s)	1463, 1796
MunI	CAATTG	1 cut(s)	756
MvaI	CCWGG	1 cut(s)	1463
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	212, 1418
NciI	CCSGG	1 cut(s)	1796
NcoI	CCATGG	1 cut(s)	110
NdeI	CATATG	1 cut(s)	499
NdeII	GATC	3 cut(s)	451, 682, 921
NlaIV	GGNNCC	1 cut(s)	403
NmuCI	GTSAC	2 cut(s)	1261, 1576
NruI	TCGCGA	1 cut(s)	101
NspI	RCATGY	3 cut(s)	375, 445, 994
PaeI	GCATGC	1 cut(s)	445
PciI	ACATGT	2 cut(s)	371, 990
PdmI	GAANNNNTTC	4 cut(s)	155, 355, 923, 1011
PfeI	GAWTC	9 cut(s)	84, 115, 151, 313, 569, 730, 845, 1699, 1834
PkrI	GCNGC	7 cut(s)	250, 555, 901, 904, 1474, 1852, 1928
PleI	GAGTC	2 cut(s)	545, 817
PpsI	GAGTC	2 cut(s)	545, 817
PscI	ACATGT	2 cut(s)	371, 990
Psp6I	CCWGG	1 cut(s)	1461
PspGI	CCWGG	1 cut(s)	1461
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	328
PstNI	CAGNNNCTG	1 cut(s)	902
PsuI	RGATCY	1 cut(s)	921
RruI	TCGCGA	1 cut(s)	101
RsaI	GTAC	5 cut(s)	16, 288, 668, 953, 979
RsaNI	GTAC	5 cut(s)	15, 287, 667, 952, 978
RseI	CAYNNNNRTG	1 cut(s)	1277
SaqAI	TTAA	8 cut(s)	92, 425, 462, 816, 909, 1130, 1277, 1913
SatI	GCNGC	7 cut(s)	249, 554, 900, 903, 1473, 1851, 1927
Sau3AI	GATC	3 cut(s)	451, 682, 921
Sau96I	GGNCC	1 cut(s)	328
ScaI	AGTACT	1 cut(s)	668
SchI	GAGTC	2 cut(s)	546, 817
ScrFI	CCNGG	2 cut(s)	1463, 1796
SduI	GDGCHC	3 cut(s)	625, 1591, 1801
SfaNI	GCATC	5 cut(s)	193, 260, 1168, 1641, 1723
SfcI	CTRYAG	1 cut(s)	670
SinI	GGWCC	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	1277
SmlI	CTYRAG	2 cut(s)	46, 1016
SmoI	CTYRAG	2 cut(s)	46, 1016
SphI	GCATGC	1 cut(s)	445
Sse9I	AATT	9 cut(s)	93, 605, 634, 756, 906, 1140, 1339, 1859, 1869
SsiI	CCGC	2 cut(s)	249, 899
SspI	AATATT	2 cut(s)	943, 1910
SspMI	CTAG	2 cut(s)	386, 446
StyD4I	CCNGG	2 cut(s)	1461, 1794
StyI	CCWWGG	2 cut(s)	110, 1807
TaaI	ACNGT	7 cut(s)	265, 274, 433, 671, 1128, 1607, 1686
TaiI	ACGT	3 cut(s)	109, 483, 1169
TaqI	TCGA	3 cut(s)	280, 1176, 1446
TaqII	GACCGA	1 cut(s)	838
TasI	AATT	9 cut(s)	93, 605, 634, 756, 906, 1140, 1339, 1859, 1869
TatI	WGTACW	4 cut(s)	14, 666, 951, 977
TauI	GCSGC	2 cut(s)	251, 902
TfiI	GAWTC	9 cut(s)	84, 115, 151, 313, 569, 730, 845, 1699, 1834
Tru1I	TTAA	8 cut(s)	92, 425, 462, 816, 909, 1130, 1277, 1913
Tru9I	TTAA	8 cut(s)	92, 425, 462, 816, 909, 1130, 1277, 1913
TscAI	CASTG	4 cut(s)	330, 630, 884, 1591
TseFI	GTSAC	2 cut(s)	1261, 1576
TseI	GCWGC	5 cut(s)	553, 902, 1472, 1850, 1926
Tsp45I	GTSAC	2 cut(s)	1261, 1576
TspGWI	ACGGA	1 cut(s)	917
TspRI	CASTG	4 cut(s)	330, 630, 884, 1591
VpaK11BI	GGWCC	1 cut(s)	328
XapI	RAATTY	4 cut(s)	605, 634, 1339, 1869
XceI	RCATGY	3 cut(s)	375, 445, 994
XmiI	GTMKAC	1 cut(s)	1246
XmnI	GAANNNNTTC	4 cut(s)	155, 355, 923, 1011
XspI	CTAG	2 cut(s)	386, 446
ZrmI	AGTACT	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.