Rmu_sc0000499.1_g000004

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000499.1
Physical Location & Seq
Reverse (-)
18021 .. 20006
1986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000499.1_g000004.1.cds

Sequence Viewer

Length: 1986 bp
atgaacaccatactgtttctcctcataatgcctcttcgctcaatccaactgtatttagacactagttctttgctttccagtaaccagacagcagatgatgatgatgatgatgatgatgatgaaatgaaaagaatcatgttaatactcgcgaaacgtccttggattcttggttgtcagaatgggtgtaatgtctatcggaatcagttcaatgtagtacagattttgaactatttgtttgaggagagtttggatgctaatcttgctttatactttttcaagtggtcagaatgttgcgccgcatcaaagcatacggtttggactgtatgtcgaatggtacatattttggtttctgggaacttgaatcacagagcagtggacctgctactgcgtcttgtgagaaatcatgctgaagaggagacaagtagtttgttactagaagttctttatggaacccacagtgaaagaagggttttagaaactgtgtgtagcatgctagttgatcagtatattaaggaaggcatggtgaacctggctttgaatgtaacatatgaaatgaagcaccaaaacatttttccttctggtggagtttgcaacactctgctacgagcattattggaatcaaaccagttggacgttgcatgggatttcttggaagttctgcggacaagaggactgggtttgaattcttctatcataagtctcttcattcataagtactgtagtgagggtgatctgggaagtggtttcaagttgcttgttgaaatgaagaagtatgggattcaacctgatgttgtttcatatacaattgttattcattccctttgcaagatgtcttatttgaaagaagccactacgttattgttgaagatgactcagttgggtatctctcctgattcggtcttgattagttcagttattgatggccactgccagttgagacaaacagcggcagcaattaagatactgaagatcttccgtcctcccctcaatatttttttgtacaatagctttacttcaaagctatgtacagatggcaacatgtttgaagcttctgaactttttcttgagatgtctgagtttggcttacttccagattgtgtttgttactcaaccataatagggggctactgcaaagtgaaagacatgaatagagcttttctgtattttggaaaaatgttaaaaagtggaattacaccatctgctaccacatacacgttgctcatcgatgcttactgcaagtctggagatacagaaatggccgaatatatgtttcaagcaatgctttcagacggtctactacctgatattgtgacttacaacactttaatggatggcttcggaaggaagggacacttacaaaaggtttttggggtcttagatatgatgaattcttctaatgtttcccccgatgttgttacatataacactctcattcatagtcttgccacaagaggatttgccaatgaggcaaaacaaatcatgtttgaacttatcaaaaggggtttctccctggatgtagcagcattcactaatgttatagacgggttttcaaagaaggggaactttgaggaagtcttttttgtgtggttctgcatgagtgagcatgaggtcaaacccgatgtagtgacatgcagtgcccttctcaatggatactgtaagaaacgtcaaatggaacaagccaatgtattatttcgcaagatgcttgatattggattacatccagacctgatactgtataacactttgattcgtggattttgtagtgttggaagcattgatgatgcttgcaacttgatatgtttgatggttgaaaatggtatccttcccaataacattactcaccgggcacttgtccttgggttcggaaaaaaaagggttaggaatcctgttttagtggcagctcttaaattgcaagaaattcttctcagatatggtattcatgctgattttgatgaatatttaataccagaaagctgcaccaattga

Protein Analysis

661

Amino Acids

74.55

Weight (kDa)

5.73

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 387
AccI GTMKAC 1 cut(s) 1294
AccII CGCG 1 cut(s) 149
AciI CCGC 3 cut(s) 297, 661, 947
AcoI YGGCCR 2 cut(s) 922, 1257
AcsI RAATTY 3 cut(s) 682, 1387, 1917
AcuI CTGAAG 2 cut(s) 429, 986
AfaI GTAC 5 cut(s) 216, 336, 716, 1001, 1027
AfiI CCNNNNNNNGG 2 cut(s) 581, 1119
AflIII ACRYGT 2 cut(s) 1038, 1212
AhdI GACNNNNNGTC 1 cut(s) 324
AhlI ACTAGT 1 cut(s) 62
AjnI CCWGG 2 cut(s) 528, 1509
AjuI GAANNNNNNNTTGG 2 cut(s) 555, 587
AluBI AGCT 6 cut(s) 1008, 1021, 1049, 1154, 1901, 1974
AluI AGCT 6 cut(s) 1008, 1021, 1049, 1154, 1901, 1974
Alw26I GTCTC 3 cut(s) 410, 704, 931
AoxI GGCC 2 cut(s) 922, 1257
ApeKI GCWGC 4 cut(s) 950, 1520, 1898, 1974
ApoI RAATTY 3 cut(s) 682, 1387, 1917
ArsI GACNNNNNNTTYG 2 cut(s) 409, 441
Asp700I GAANNNNTTC 4 cut(s) 203, 971, 1059, 1920
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 376
AsuC2I CCSGG 1 cut(s) 1844
AsuHPI GGTGA 3 cut(s) 535, 740, 1832
AvaII GGWCC 1 cut(s) 376
BaeGI GKGCMC 2 cut(s) 1639, 1849
BalI TGGCCA 1 cut(s) 924
BbvI GCAGC 4 cut(s) 962, 1532, 1910, 1961
BccI CCATC 5 cut(s) 914, 1025, 1204, 1325, 1798
BciT130I CCWGG 2 cut(s) 530, 1511
BciVI GTATCC 2 cut(s) 1643, 1829
BclI TGATCA 1 cut(s) 499
BcnI CCSGG 1 cut(s) 1844
BcoDI GTCTC 3 cut(s) 410, 704, 931
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 3 cut(s) 63, 434, 494
BfmI CTRYAG 1 cut(s) 718
BfuAI ACCTGC 1 cut(s) 387
BfuI GTATCC 2 cut(s) 1643, 1829
BglI GCCNNNNNGGC 1 cut(s) 1466
BglII AGATCT 1 cut(s) 969
BisI GCNGC 6 cut(s) 297, 948, 951, 1521, 1899, 1975
BlsI GCNGC 6 cut(s) 298, 949, 952, 1522, 1900, 1976
BmcAI AGTACT 1 cut(s) 716
Bme1390I CCNGG 3 cut(s) 530, 1511, 1844
Bme18I GGWCC 1 cut(s) 376
BmeRI GACNNNNNGTC 1 cut(s) 324
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 3 cut(s) 530, 1511, 1844
BmrI ACTGGG 1 cut(s) 683
BmsI GCATC 5 cut(s) 241, 308, 1216, 1689, 1771
BmuI ACTGGG 1 cut(s) 683
BpmI CTGGAG 1 cut(s) 1263
BpuEI CTTGAG 1 cut(s) 1085
BpuMI CCSGG 1 cut(s) 1844
Bsa29I ATCGAT 1 cut(s) 1224
BsaBI GATNNNNATC 1 cut(s) 255
BsaJI CCNNGG 3 cut(s) 158, 1509, 1855
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 2 cut(s) 581, 1119
Bse1I ACTGG 4 cut(s) 78, 625, 678, 931
Bse3DI GCAATG 1 cut(s) 1284
Bse8I GATNNNNATC 1 cut(s) 255
BseBI CCWGG 2 cut(s) 530, 1511
BseCI ATCGAT 1 cut(s) 1224
BseDI CCNNGG 3 cut(s) 158, 1509, 1855
BseGI GGATG 4 cut(s) 256, 1336, 1519, 1717
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 581, 1119
BseMI GCAATG 1 cut(s) 1284
BseMII CTCAG 3 cut(s) 887, 1065, 1939
BseNI ACTGG 4 cut(s) 78, 625, 678, 931
BseRI GAGGAG 3 cut(s) 11, 254, 428
BseSI GKGCMC 2 cut(s) 1639, 1849
BseXI GCAGC 4 cut(s) 962, 1532, 1910, 1961
BsgI GTGCAG 1 cut(s) 1960
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 2 cut(s) 924, 1259
BshVI ATCGAT 1 cut(s) 1224
BsiSI CCGG 1 cut(s) 1843
BslFI GGGAC 1 cut(s) 1362
BslI CCNNNNNNNGG 2 cut(s) 581, 1119
BsmAI GTCTC 3 cut(s) 410, 704, 931
BsmFI GGGAC 1 cut(s) 1362
BsmI GAATGC 1 cut(s) 1523
BsnI GGCC 2 cut(s) 924, 1259
Bsp1286I GDGCHC 2 cut(s) 1639, 1849
Bsp1407I TGTACA 2 cut(s) 999, 1025
Bsp143I GATC 3 cut(s) 499, 730, 969
Bsp68I TCGCGA 1 cut(s) 149
BspACI CCGC 3 cut(s) 297, 661, 947
BspANI GGCC 2 cut(s) 924, 1259
BspCNI CTCAG 3 cut(s) 886, 1066, 1938
BspDI ATCGAT 1 cut(s) 1224
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 451
BspMI ACCTGC 1 cut(s) 387
BsrDI GCAATG 1 cut(s) 1284
BsrGI TGTACA 2 cut(s) 999, 1025
BsrI ACTGG 4 cut(s) 78, 625, 678, 931
BssECI CCNNGG 3 cut(s) 158, 1509, 1855
BssMI GATC 3 cut(s) 499, 730, 969
BssT1I CCWWGG 2 cut(s) 158, 1855
Bst2UI CCWGG 2 cut(s) 530, 1511
Bst6I CTCTTC 3 cut(s) 39, 405, 707
BstAUI TGTACA 2 cut(s) 999, 1025
BstC8I GCNNGC 2 cut(s) 491, 1786
BstDEI CTNAG 4 cut(s) 873, 1074, 1375, 1925
BstF5I GGATG 4 cut(s) 256, 1336, 1519, 1717
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 3 cut(s) 502, 733, 972
BstMAI GTCTC 3 cut(s) 410, 704, 931
BstMBI GATC 3 cut(s) 499, 730, 969
BstMWI GCNNNNNNNGC 2 cut(s) 260, 1466
BstNI CCWGG 2 cut(s) 530, 1511
BstNSI RCATGY 3 cut(s) 493, 1042, 1632
BstSCI CCNGG 3 cut(s) 528, 1509, 1842
BstSFI CTRYAG 1 cut(s) 718
BstSLI GKGCMC 2 cut(s) 1639, 1849
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 4 cut(s) 962, 1532, 1910, 1961
BstX2I RGATCY 1 cut(s) 969
BstYI RGATCY 1 cut(s) 969
Bsu15I ATCGAT 1 cut(s) 1224
BsuI GTATCC 2 cut(s) 1643, 1829
BsuRI GGCC 2 cut(s) 924, 1259
BsuTUI ATCGAT 1 cut(s) 1224
BtsCI GGATG 4 cut(s) 256, 1336, 1519, 1717
BtsI GCAGTG 3 cut(s) 378, 925, 1639
BtsIMutI CAGTG 4 cut(s) 378, 463, 925, 1639
BtuMI TCGCGA 1 cut(s) 149
BveI ACCTGC 1 cut(s) 387
Cac8I GCNNGC 2 cut(s) 491, 1786
CfoI GCGC 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 376
ClaI ATCGAT 1 cut(s) 1224
CseI GACGC 1 cut(s) 377
Csp6I GTAC 5 cut(s) 215, 335, 715, 1000, 1026
CviQI GTAC 5 cut(s) 215, 335, 715, 1000, 1026
DdeI CTNAG 4 cut(s) 873, 1074, 1375, 1925
DpnI GATC 3 cut(s) 501, 732, 971
DpnII GATC 3 cut(s) 499, 730, 969
DriI GACNNNNNGTC 1 cut(s) 324
EaeI YGGCCR 2 cut(s) 922, 1257
Eam1104I CTCTTC 3 cut(s) 39, 405, 707
Eam1105I GACNNNNNGTC 1 cut(s) 324
EarI CTCTTC 3 cut(s) 39, 405, 707
Eco130I CCWWGG 2 cut(s) 158, 1855
Eco47I GGWCC 1 cut(s) 376
Eco57I CTGAAG 2 cut(s) 429, 986
EcoRI GAATTC 2 cut(s) 682, 1387
EcoRII CCWGG 2 cut(s) 528, 1509
EcoT14I CCWWGG 2 cut(s) 158, 1855
ErhI CCWWGG 2 cut(s) 158, 1855
FalI AAGNNNNNCTT 8 cut(s) 1266, 1298, 1337, 1369, 1547, 1579, 1905, 1937
FaqI GGGAC 1 cut(s) 1362
FauNDI CATATG 1 cut(s) 547
FbaI TGATCA 1 cut(s) 499
FblI GTMKAC 1 cut(s) 1294
Fnu4HI GCNGC 6 cut(s) 297, 948, 951, 1521, 1899, 1975
FokI GGATG 4 cut(s) 263, 1343, 1526, 1704
Fsp4HI GCNGC 6 cut(s) 297, 948, 951, 1521, 1899, 1975
FspBI CTAG 3 cut(s) 63, 434, 494
GlaI GCGC 1 cut(s) 295
GluI GCNGC 6 cut(s) 297, 948, 951, 1521, 1899, 1975
GsuI CTGGAG 1 cut(s) 1263
HaeIII GGCC 2 cut(s) 924, 1259
HapII CCGG 1 cut(s) 1843
HgaI GACGC 1 cut(s) 377
HhaI GCGC 1 cut(s) 296
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HindIII AAGCTT 1 cut(s) 1047
HpaII CCGG 1 cut(s) 1843
HphI GGTGA 3 cut(s) 535, 740, 1832
Hpy166II GTNNAC 3 cut(s) 376, 526, 1295
Hpy188I TCNGA 9 cut(s) 177, 198, 286, 1054, 1075, 1288, 1340, 1865, 1928
Hpy188III TCNNGA 7 cut(s) 148, 890, 901, 1064, 1091, 1242, 1721
Hpy8I GTNNAC 3 cut(s) 376, 526, 1295
HpyAV CCTTC 8 cut(s) 459, 509, 585, 1335, 1339, 1549, 1649, 1832
HpyCH4IV ACGT 5 cut(s) 154, 633, 854, 1214, 1663
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 1466
HpyF3I CTNAG 4 cut(s) 873, 1074, 1375, 1925
HpySE526I ACGT 5 cut(s) 154, 633, 854, 1214, 1663
HspAI GCGC 1 cut(s) 294
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 3 cut(s) 499, 730, 969
Lsp1109I GCAGC 4 cut(s) 962, 1532, 1910, 1961
LweI GCATC 5 cut(s) 241, 308, 1216, 1689, 1771
MaeI CTAG 3 cut(s) 63, 434, 494
MaeII ACGT 5 cut(s) 154, 633, 854, 1214, 1663
MaeIII GTNAC 7 cut(s) 80, 429, 541, 1103, 1309, 1414, 1624
MalI GATC 3 cut(s) 501, 732, 971
MboI GATC 3 cut(s) 499, 730, 969
MfeI CAATTG 2 cut(s) 804, 1981
MflI RGATCY 1 cut(s) 969
MhlI GDGCHC 2 cut(s) 1639, 1849
MlsI TGGCCA 1 cut(s) 924
MluCI AATT 8 cut(s) 682, 804, 954, 1188, 1387, 1907, 1917, 1981
MluNI TGGCCA 1 cut(s) 924
MlyI GAGTC 1 cut(s) 865
MmeI TCCRAC 3 cut(s) 70, 609, 1747
Mox20I TGGCCA 1 cut(s) 924
MroXI GAANNNNTTC 4 cut(s) 203, 971, 1059, 1920
MscI TGGCCA 1 cut(s) 924
MseI TTAA 7 cut(s) 140, 510, 957, 1178, 1325, 1905, 1961
MslI CAYNNNNRTG 1 cut(s) 1325
Msp20I TGGCCA 1 cut(s) 924
MspA1I CMGCKG 1 cut(s) 947
MspI CCGG 1 cut(s) 1843
MspR9I CCNGG 3 cut(s) 530, 1511, 1844
MunI CAATTG 2 cut(s) 804, 1981
Mva1269I GAATGC 1 cut(s) 1523
MvaI CCWGG 2 cut(s) 530, 1511
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 2 cut(s) 260, 1466
NciI CCSGG 1 cut(s) 1844
NdeI CATATG 1 cut(s) 547
NdeII GATC 3 cut(s) 499, 730, 969
NlaIV GGNNCC 1 cut(s) 451
NmuCI GTSAC 2 cut(s) 1309, 1624
NruI TCGCGA 1 cut(s) 149
NspI RCATGY 3 cut(s) 493, 1042, 1632
PaeI GCATGC 1 cut(s) 493
PciI ACATGT 1 cut(s) 1038
PctI GAATGC 1 cut(s) 1523
PdmI GAANNNNTTC 4 cut(s) 203, 971, 1059, 1920
PfeI GAWTC 9 cut(s) 132, 163, 199, 361, 617, 778, 893, 1747, 1882
PkrI GCNGC 6 cut(s) 298, 949, 952, 1522, 1900, 1976
PleI GAGTC 1 cut(s) 865
PpsI GAGTC 1 cut(s) 865
PscI ACATGT 1 cut(s) 1038
Psp6I CCWGG 2 cut(s) 528, 1509
PspGI CCWGG 2 cut(s) 528, 1509
PspN4I GGNNCC 1 cut(s) 451
PspPI GGNCC 1 cut(s) 376
PsuI RGATCY 1 cut(s) 969
RruI TCGCGA 1 cut(s) 149
RsaI GTAC 5 cut(s) 216, 336, 716, 1001, 1027
RsaNI GTAC 5 cut(s) 215, 335, 715, 1000, 1026
RseI CAYNNNNRTG 1 cut(s) 1325
SaqAI TTAA 7 cut(s) 140, 510, 957, 1178, 1325, 1905, 1961
SatI GCNGC 6 cut(s) 297, 948, 951, 1521, 1899, 1975
Sau3AI GATC 3 cut(s) 499, 730, 969
Sau96I GGNCC 1 cut(s) 376
ScaI AGTACT 1 cut(s) 716
SchI GAGTC 1 cut(s) 865
ScrFI CCNGG 3 cut(s) 530, 1511, 1844
SduI GDGCHC 2 cut(s) 1639, 1849
SfaNI GCATC 5 cut(s) 241, 308, 1216, 1689, 1771
SfcI CTRYAG 1 cut(s) 718
SinI GGWCC 1 cut(s) 376
SmiMI CAYNNNNRTG 1 cut(s) 1325
SmlI CTYRAG 1 cut(s) 1064
SmoI CTYRAG 1 cut(s) 1064
SpeI ACTAGT 1 cut(s) 62
SphI GCATGC 1 cut(s) 493
Sse9I AATT 8 cut(s) 682, 804, 954, 1188, 1387, 1907, 1917, 1981
SsiI CCGC 3 cut(s) 297, 661, 947
SspI AATATT 2 cut(s) 991, 1958
SspMI CTAG 3 cut(s) 63, 434, 494
StyD4I CCNGG 3 cut(s) 528, 1509, 1842
StyI CCWWGG 2 cut(s) 158, 1855
TaiI ACGT 5 cut(s) 157, 636, 857, 1217, 1666
TaqI TCGA 2 cut(s) 328, 1224
TaqII GACCGA 1 cut(s) 886
TasI AATT 8 cut(s) 682, 804, 954, 1188, 1387, 1907, 1917, 1981
TatI WGTACW 4 cut(s) 214, 714, 999, 1025
TauI GCSGC 2 cut(s) 299, 950
TfiI GAWTC 9 cut(s) 132, 163, 199, 361, 617, 778, 893, 1747, 1882
Tru1I TTAA 7 cut(s) 140, 510, 957, 1178, 1325, 1905, 1961
Tru9I TTAA 7 cut(s) 140, 510, 957, 1178, 1325, 1905, 1961
TscAI CASTG 4 cut(s) 378, 463, 932, 1639
TseFI GTSAC 2 cut(s) 1309, 1624
TseI GCWGC 4 cut(s) 950, 1520, 1898, 1974
Tsp45I GTSAC 2 cut(s) 1309, 1624
TspGWI ACGGA 1 cut(s) 965
TspRI CASTG 4 cut(s) 378, 463, 932, 1639
VpaK11BI GGWCC 1 cut(s) 376
XapI RAATTY 3 cut(s) 682, 1387, 1917
XceI RCATGY 3 cut(s) 493, 1042, 1632
XmiI GTMKAC 1 cut(s) 1294
XmnI GAANNNNTTC 4 cut(s) 203, 971, 1059, 1920
XspI CTAG 3 cut(s) 63, 434, 494
ZrmI AGTACT 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.