Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006842

Physical Location & Seq

Genomic Coordinates Reverse (-)

13845225 .. 13845650

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0085200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAAGGCGGCGCTGCACCTGGAGAAGCTTCAAATCGGCGAAATTGTAGATGAAGATCTTCTGGACCAGAACGACGACGATGCGGTCGCGGTGGAGCTTGACGGCTTTGACCTCAGAGCGGAAGGAGAGCTCGCCGATGCAGCGGGACTGCTGGTCGTCCCAGATCATGACCTTGTTGGGGGAGTAGAGGGGGTCGGGGCCGTCGCCGACGATGGTGAGGATGTTGCAGCGGAAGAGCATCTGGACCAATCTGACGGAGCCAAGTGGGCCGAAGTCGCGGCGGAAGATCTCGCGGAAGGGGTCGCAGTTGTAGATGCGGAAGCCGAGGTCGGTGCCGGCGGCGAAGCAGCTGTGGTCCTGGTTGTAGGAGAGGTTGAGGAGCTGGGCCGGGGGAAGAGTCGGAGTCGGAGTCGGGTTTTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

141

Amino Acids

14.44

Weight (kDa)

4.05

Isoelectric Point (pI)

26.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19280 AT2G19280 AT2G19280 AT2G19280
fragaria_vesca	FvH4_7g04580
prunus_persica	Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0330001
rosa_laevigata	RLG00000029844
rosa_multiflora	Rmu_sc0000499.1_g000004 Rmu_sc0009365.1_g000009 Rmu_sc0009365.1_g000021 Rmu_sc0031998.1_g000001
rosa_roxburghii	Rroxscaffold_4G00320440
rosa_rugosa	Rorug01G0085200 Rorug01G0085300
rosa_samantha	Rh1AG103500 Rh1BG081900 Rh1CG098500 Rh1DG105900
rosa_wichuraiana	Rw1G008230 Rw1G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AccB1I	GGYRCC	1 cut(s)	332
AccBSI	CCGCTC	1 cut(s)	119
AccII	CGCG	3 cut(s)	89, 278, 293
AfiI	CCNNNNNNNGG	2 cut(s)	118, 178
AgsI	TTSAA	1 cut(s)	32
AhdI	GACNNNNNGTC	1 cut(s)	152
AjnI	CCWGG	2 cut(s)	18, 357
AluBI	AGCT	5 cut(s)	28, 97, 130, 350, 382
AluI	AGCT	5 cut(s)	28, 97, 130, 350, 382
Alw21I	GWGCWC	1 cut(s)	132
AoxI	GGCC	3 cut(s)	198, 267, 385
ApeKI	GCWGC	4 cut(s)	13, 140, 227, 347
Asp700I	GAANNNNTTC	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	6 cut(s)	64, 198, 244, 267, 355, 385
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	3 cut(s)	64, 244, 355
BanI	GGYRCC	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	3 cut(s)	152, 239, 359
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	2 cut(s)	118, 185
BcgI	CGANNNNNNTGC	4 cut(s)	62, 96, 314, 348
BciT130I	CCWGG	2 cut(s)	20, 359
BcnI	CCSGG	1 cut(s)	389
BfaI	CTAG	1 cut(s)	424
BfoI	RGCGCY	1 cut(s)	14
BglI	GCCNNNNNGGC	1 cut(s)	266
BglII	AGATCT	2 cut(s)	55, 286
BisI	GCNGC	7 cut(s)	9, 14, 141, 228, 279, 340, 348
BlsI	GCNGC	7 cut(s)	10, 15, 142, 229, 280, 341, 349
Bme1390I	CCNGG	3 cut(s)	20, 359, 389
Bme18I	GGWCC	3 cut(s)	64, 244, 355
BmeRI	GACNNNNNGTC	1 cut(s)	152
BmgT120I	GGNCC	6 cut(s)	64, 198, 244, 267, 355, 385
BmiI	GGNNCC	3 cut(s)	199, 259, 334
BmrFI	CCNGG	3 cut(s)	20, 359, 389
BmsI	GCATC	4 cut(s)	70, 127, 247, 304
BpmI	CTGGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	389
BsaBI	GATNNNNATC	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	324, 388
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 178
Bse118I	RCCGGY	1 cut(s)	335
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	2 cut(s)	20, 359
BseDI	CCNNGG	2 cut(s)	324, 388
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	2 cut(s)	118, 178
BseMII	CTCAG	1 cut(s)	127
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	3 cut(s)	152, 239, 359
BseYI	CCCAGC	1 cut(s)	382
Bsh1236I	CGCG	3 cut(s)	89, 278, 293
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	3 cut(s)	200, 269, 387
BshNI	GGYRCC	1 cut(s)	332
BsiEI	CGRYCG	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	336, 388
BslFI	GGGAC	2 cut(s)	143, 159
BslI	CCNNNNNNNGG	2 cut(s)	118, 178
BsmFI	GGGAC	2 cut(s)	143, 159
BsnI	GGCC	3 cut(s)	200, 269, 387
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	55, 163, 286
BspANI	GGCC	3 cut(s)	200, 269, 387
BspCNI	CTCAG	1 cut(s)	126
BspFNI	CGCG	3 cut(s)	89, 278, 293
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	3 cut(s)	199, 259, 334
BspQI	GCTCTTC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	332
BsrBI	CCGCTC	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	335
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	2 cut(s)	324, 388
BssMI	GATC	3 cut(s)	55, 163, 286
Bst2UI	CCWGG	2 cut(s)	20, 359
Bst6I	CTCTTC	2 cut(s)	228, 389
BstC8I	GCNNGC	2 cut(s)	132, 337
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	226
BstFNI	CGCG	3 cut(s)	89, 278, 293
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	3 cut(s)	58, 166, 289
BstMBI	GATC	3 cut(s)	55, 163, 286
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 266, 275
BstNI	CCWGG	2 cut(s)	20, 359
BstSCI	CCNGG	3 cut(s)	18, 357, 387
BstUI	CGCG	3 cut(s)	89, 278, 293
BstV1I	GCAGC	3 cut(s)	152, 239, 359
BstX2I	RGATCY	2 cut(s)	55, 286
BstYI	RGATCY	2 cut(s)	55, 286
BsuRI	GGCC	3 cut(s)	200, 269, 387
BtsCI	GGATG	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	132, 337
CciI	TCATGA	1 cut(s)	166
CfoI	GCGC	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	6 cut(s)	64, 198, 244, 267, 355, 385
CviAII	CATG	1 cut(s)	167
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	3 cut(s)	57, 165, 288
DpnII	GATC	3 cut(s)	55, 163, 286
DrdI	GACNNNNNNGTC	1 cut(s)	83
DriI	GACNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	83
Eam1104I	CTCTTC	2 cut(s)	228, 389
Eam1105I	GACNNNNNGTC	1 cut(s)	152
EarI	CTCTTC	2 cut(s)	228, 389
EciI	GGCGGA	1 cut(s)	296
Ecl136II	GAGCTC	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	3 cut(s)	64, 244, 355
Eco53kI	GAGCTC	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	130
EcoRII	CCWGG	2 cut(s)	18, 357
EcoT38I	GRGCYC	1 cut(s)	132
FaeI	CATG	1 cut(s)	170
FaiI	YATR	1 cut(s)	168
FaqI	GGGAC	2 cut(s)	143, 159
FatI	CATG	1 cut(s)	166
FauI	CCCGC	1 cut(s)	136
Fnu4HI	GCNGC	7 cut(s)	9, 14, 141, 228, 279, 340, 348
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	7 cut(s)	9, 14, 141, 228, 279, 340, 348
FspBI	CTAG	1 cut(s)	424
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	7 cut(s)	9, 14, 141, 228, 279, 340, 348
GsaI	CCCAGC	1 cut(s)	386
GsuI	CTGGAG	1 cut(s)	41
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	3 cut(s)	200, 269, 387
HapII	CCGG	2 cut(s)	336, 388
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	1 cut(s)	170
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	3 cut(s)	397, 403, 409
HpaII	CCGG	2 cut(s)	336, 388
HphI	GGTGA	1 cut(s)	227
Hpy188I	TCNGA	4 cut(s)	116, 253, 402, 408
Hpy188III	TCNNGA	3 cut(s)	62, 167, 242
Hpy99I	CGWCG	4 cut(s)	77, 80, 206, 212
HpyAV	CCTTC	2 cut(s)	116, 290
HpyCH4V	TGCA	3 cut(s)	16, 140, 227
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 266, 275
HpyF3I	CTNAG	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	170
HspAI	GCGC	1 cut(s)	11
KroI	GCCGGC	1 cut(s)	335
KroNI	GCCGGC	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	55, 163, 286
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	3 cut(s)	94, 257, 379
Lsp1109I	GCAGC	3 cut(s)	152, 239, 359
LweI	GCATC	4 cut(s)	70, 127, 247, 304
MaeI	CTAG	1 cut(s)	424
MalI	GATC	3 cut(s)	57, 165, 288
MbiI	CCGCTC	1 cut(s)	119
MboI	GATC	3 cut(s)	55, 163, 286
MboII	GAAGA	5 cut(s)	50, 65, 245, 296, 406
MflI	RGATCY	2 cut(s)	55, 286
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	1 cut(s)	42
MlyI	GAGTC	3 cut(s)	406, 412, 418
MmeI	TCCRAC	2 cut(s)	380, 386
MnlI	CCTC	6 cut(s)	122, 181, 211, 319, 364, 370
MroNI	GCCGGC	1 cut(s)	335
MroXI	GAANNNNTTC	1 cut(s)	57
MspA1I	CMGCKG	3 cut(s)	143, 230, 350
MspI	CCGG	2 cut(s)	336, 388
MspR9I	CCNGG	3 cut(s)	20, 359, 389
MvaI	CCWGG	2 cut(s)	20, 359
MvnI	CGCG	3 cut(s)	89, 278, 293
MwoI	GCNNNNNNNGC	3 cut(s)	140, 266, 275
NaeI	GCCGGC	1 cut(s)	337
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	3 cut(s)	55, 163, 286
NgoMIV	GCCGGC	1 cut(s)	335
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	3 cut(s)	199, 259, 334
NmeAIII	GCCGAG	1 cut(s)	349
PagI	TCATGA	1 cut(s)	166
PciSI	GCTCTTC	1 cut(s)	228
PdiI	GCCGGC	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	57
PkrI	GCNGC	7 cut(s)	10, 15, 142, 229, 280, 341, 349
PleI	GAGTC	3 cut(s)	405, 411, 417
PpsI	GAGTC	3 cut(s)	405, 411, 417
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	2 cut(s)	18, 357
PspFI	CCCAGC	1 cut(s)	382
PspGI	CCWGG	2 cut(s)	18, 357
PspN4I	GGNNCC	3 cut(s)	199, 259, 334
PspPI	GGNCC	6 cut(s)	64, 198, 244, 267, 355, 385
PsuI	RGATCY	2 cut(s)	55, 286
PvuII	CAGCTG	1 cut(s)	350
SacI	GAGCTC	1 cut(s)	132
SapI	GCTCTTC	1 cut(s)	228
SatI	GCNGC	7 cut(s)	9, 14, 141, 228, 279, 340, 348
Sau3AI	GATC	3 cut(s)	55, 163, 286
Sau96I	GGNCC	6 cut(s)	64, 198, 244, 267, 355, 385
SchI	GAGTC	3 cut(s)	406, 412, 418
ScrFI	CCNGG	3 cut(s)	20, 359, 389
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	4 cut(s)	70, 127, 247, 304
SinI	GGWCC	3 cut(s)	64, 244, 355
Sse9I	AATT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	424
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	3 cut(s)	18, 357, 387
TasI	AATT	1 cut(s)	42
TauI	GCSGC	3 cut(s)	11, 281, 342
TseI	GCWGC	4 cut(s)	13, 140, 227, 347
TspDTI	ATGAA	2 cut(s)	17, 66
TspGWI	ACGGA	1 cut(s)	270
VpaK11BI	GGWCC	3 cut(s)	64, 244, 355
XmnI	GAANNNNTTC	1 cut(s)	57
XspI	CTAG	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.