Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009365.1

Orthogroup ID

OG0006842

Physical Location & Seq

Genomic Coordinates Forward (+)

96825 .. 98801

Gene Structure 1977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009365.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1977 bp

atgaacaccatactgtttctcctcataatgcctcttcgctcaatccaactgtatttagacactagttctttgctttccagtaaccagacagcagatgatgatgatgacgatgaaatgaaaagaatcatgttgatacttgcgaaacgtccgtggattcttggttgtcaaaatgggtataatgtctatcgggatcagttcaatgtagtacagattttgaactatttgtttgaggagagtttggatgctaatcttgctttatactttttcaagtggtcagaatgttgcgccgcatcaaagcatacagtttggactgtatgtcgaatggtacatattttggtttctgggaacttgaatcatagagcagtggacctgctacagcgtcttgtgagaaatcatgctgaagaggagacaagtagtttgttactagaagttctttatggaacccacagtgaaagaagggttttagaaactgtgtgtagcatgctagttgatcagtatattaaggaaggcatggtgaacctggctttgaatgtaacatatgaaatgaagcaccaaaacatttttccttctggtggagtttgcaacactctgctacgagcattattggaatcaaaccagttggacgttgcatgggatttcttggaagttctgcggacaagaggactgggtttgaattcttctatcataagtctcttcattcataagtactgtagtgagggtgatctgggaagtggtttcaagttgcttgttgaaatgaagaagtatgggattcaacctgatgttgtttcatataccattgttattcattccctgtgcaagatgtcttatttgaaagaagccactactttattgtttaagatgactcagttgggtatctctcctgattcggtcttgattagttcagttattgatggccactgccagttgagacaaacagcggcagcaattaagatactgaagatcttccgtcctcccctcaatatttttttgtacaatagctttacttcaaagctatgtacagatggcaacatgtttgaagcttctgaactttttcttgagatgtctgagtttggcttacttccagattgtgtttgttactcaaccataatagggggctactgcaaagtgaaagacatgaatagagcttttctgtattttggaaaaatgttaaaaagtggaattacaccatctgctaccacatacacgttgctcatcgatgcttactgcaagtctggagatatagaaatgtccgaagatatgtttcaagcaatgctttcagacggtctactacctgatattgtgacttacaacactttaatggatggcttcggaaggaagggacacttacaaaaggtttttggggtcttagatatgatgaattcttctaatgtttcccccgatgttgttacatataacactctcattcatagtcttgccacaagaggatttgccaatgaggcaaaacaaatcatgtttgaacttatcaaaaggggtttctccctggatgtagcagcattcactaatgttatagacgggttttcaaagaaggggaactttgaggaagtcttttttgtgtggttctgcatgagtgagcatgaggtcaaacccgatgtagtgacatgcagtgcccttctcaatggatactgtaagaaacgtcaaatggaacaagccaatgtattatttcgcaagatgcttgatattggattacatccagacctgatactgtataacactttgattcgtggattttgtagtgttggaagcattgatgatgcttgcaacttgatatgtttgatggttgaaaatggtatccttcccaataacattactcaccgggcacttgtccttgggttcggaaaaaaaagggttaggaatcctgttttagtggcagctcttaaattgcaagaaattcttctcagatatggtattcatgctgattttgatgaatatttaataccagaaagctgcacccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

658

Amino Acids

74.31

Weight (kDa)

5.85

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19280 AT2G19280 AT2G19280 AT2G19280
fragaria_vesca	FvH4_7g04580
prunus_persica	Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0330001
rosa_laevigata	RLG00000029844
rosa_multiflora	Rmu_sc0000499.1_g000004 Rmu_sc0009365.1_g000009 Rmu_sc0009365.1_g000021 Rmu_sc0031998.1_g000001
rosa_roxburghii	Rroxscaffold_4G00320440
rosa_rugosa	Rorug01G0085200 Rorug01G0085300
rosa_samantha	Rh1AG103500 Rh1BG081900 Rh1CG098500 Rh1DG105900
rosa_wichuraiana	Rw1G008230 Rw1G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	378
AccI	GTMKAC	1 cut(s)	1285
AciI	CCGC	3 cut(s)	288, 652, 938
AclWI	GGATC	1 cut(s)	198
AcoI	YGGCCR	1 cut(s)	913
AcsI	RAATTY	3 cut(s)	673, 1378, 1908
AcuI	CTGAAG	2 cut(s)	420, 977
AfaI	GTAC	5 cut(s)	207, 327, 707, 992, 1018
AfiI	CCNNNNNNNGG	2 cut(s)	572, 1110
AflIII	ACRYGT	2 cut(s)	1029, 1203
AhdI	GACNNNNNGTC	1 cut(s)	315
AhlI	ACTAGT	1 cut(s)	62
AjnI	CCWGG	2 cut(s)	519, 1500
AjuI	GAANNNNNNNTTGG	2 cut(s)	546, 578
AluBI	AGCT	6 cut(s)	999, 1012, 1040, 1145, 1892, 1965
AluI	AGCT	6 cut(s)	999, 1012, 1040, 1145, 1892, 1965
Alw26I	GTCTC	3 cut(s)	401, 695, 922
AlwI	GGATC	1 cut(s)	198
AoxI	GGCC	1 cut(s)	913
ApeKI	GCWGC	4 cut(s)	941, 1511, 1889, 1965
ApoI	RAATTY	3 cut(s)	673, 1378, 1908
ArsI	GACNNNNNNTTYG	2 cut(s)	400, 432
Asp700I	GAANNNNTTC	3 cut(s)	962, 1050, 1911
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	367
AsuC2I	CCSGG	1 cut(s)	1835
AsuHPI	GGTGA	3 cut(s)	526, 731, 1823
AvaII	GGWCC	1 cut(s)	367
BaeGI	GKGCMC	2 cut(s)	1630, 1840
BalI	TGGCCA	1 cut(s)	915
BbvI	GCAGC	4 cut(s)	953, 1523, 1901, 1952
BccI	CCATC	5 cut(s)	905, 1016, 1195, 1316, 1789
BciT130I	CCWGG	2 cut(s)	521, 1502
BciVI	GTATCC	2 cut(s)	1634, 1820
BclI	TGATCA	1 cut(s)	490
BcnI	CCSGG	1 cut(s)	1835
BcoDI	GTCTC	3 cut(s)	401, 695, 922
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	3 cut(s)	63, 425, 485
BfmI	CTRYAG	2 cut(s)	374, 709
BfuAI	ACCTGC	1 cut(s)	378
BfuI	GTATCC	2 cut(s)	1634, 1820
BglI	GCCNNNNNGGC	1 cut(s)	1457
BglII	AGATCT	1 cut(s)	960
BisI	GCNGC	6 cut(s)	288, 939, 942, 1512, 1890, 1966
BlsI	GCNGC	6 cut(s)	289, 940, 943, 1513, 1891, 1967
BmcAI	AGTACT	1 cut(s)	707
Bme1390I	CCNGG	3 cut(s)	521, 1502, 1835
Bme18I	GGWCC	1 cut(s)	367
BmeRI	GACNNNNNGTC	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	3 cut(s)	521, 1502, 1835
BmrI	ACTGGG	1 cut(s)	674
BmsI	GCATC	5 cut(s)	232, 299, 1207, 1680, 1762
BmuI	ACTGGG	1 cut(s)	674
BpmI	CTGGAG	1 cut(s)	1254
BpuEI	CTTGAG	1 cut(s)	1076
BpuMI	CCSGG	1 cut(s)	1835
Bsa29I	ATCGAT	1 cut(s)	1215
BsaBI	GATNNNNATC	1 cut(s)	246
BsaJI	CCNNGG	3 cut(s)	149, 1500, 1846
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	572, 1110
Bse1I	ACTGG	4 cut(s)	78, 616, 669, 922
Bse3DI	GCAATG	1 cut(s)	1275
Bse8I	GATNNNNATC	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	521, 1502
BseCI	ATCGAT	1 cut(s)	1215
BseDI	CCNNGG	3 cut(s)	149, 1500, 1846
BseGI	GGATG	4 cut(s)	247, 1327, 1510, 1708
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	2 cut(s)	572, 1110
BseMI	GCAATG	1 cut(s)	1275
BseMII	CTCAG	3 cut(s)	878, 1056, 1930
BseNI	ACTGG	4 cut(s)	78, 616, 669, 922
BseRI	GAGGAG	3 cut(s)	11, 245, 419
BseSI	GKGCMC	2 cut(s)	1630, 1840
BseXI	GCAGC	4 cut(s)	953, 1523, 1901, 1952
BsgI	GTGCAG	1 cut(s)	1951
BshFI	GGCC	1 cut(s)	915
BshVI	ATCGAT	1 cut(s)	1215
BsiSI	CCGG	1 cut(s)	1834
BslFI	GGGAC	1 cut(s)	1353
BslI	CCNNNNNNNGG	2 cut(s)	572, 1110
BsmAI	GTCTC	3 cut(s)	401, 695, 922
BsmFI	GGGAC	1 cut(s)	1353
BsmI	GAATGC	1 cut(s)	1514
BsnI	GGCC	1 cut(s)	915
Bsp1286I	GDGCHC	2 cut(s)	1630, 1840
Bsp1407I	TGTACA	2 cut(s)	990, 1016
Bsp143I	GATC	4 cut(s)	190, 490, 721, 960
BspACI	CCGC	3 cut(s)	288, 652, 938
BspANI	GGCC	1 cut(s)	915
BspCNI	CTCAG	3 cut(s)	877, 1057, 1929
BspDI	ATCGAT	1 cut(s)	1215
BspLI	GGNNCC	1 cut(s)	442
BspMI	ACCTGC	1 cut(s)	378
BspPI	GGATC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	1275
BsrGI	TGTACA	2 cut(s)	990, 1016
BsrI	ACTGG	4 cut(s)	78, 616, 669, 922
BssECI	CCNNGG	3 cut(s)	149, 1500, 1846
BssMI	GATC	4 cut(s)	190, 490, 721, 960
BssT1I	CCWWGG	1 cut(s)	1846
Bst2UI	CCWGG	2 cut(s)	521, 1502
Bst6I	CTCTTC	3 cut(s)	39, 396, 698
BstAUI	TGTACA	2 cut(s)	990, 1016
BstC8I	GCNNGC	2 cut(s)	482, 1777
BstDEI	CTNAG	4 cut(s)	864, 1065, 1366, 1916
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	4 cut(s)	247, 1327, 1510, 1708
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	4 cut(s)	193, 493, 724, 963
BstMAI	GTCTC	3 cut(s)	401, 695, 922
BstMBI	GATC	4 cut(s)	190, 490, 721, 960
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 1457
BstNI	CCWGG	2 cut(s)	521, 1502
BstNSI	RCATGY	3 cut(s)	484, 1033, 1623
BstSCI	CCNGG	3 cut(s)	519, 1500, 1833
BstSFI	CTRYAG	2 cut(s)	374, 709
BstSLI	GKGCMC	2 cut(s)	1630, 1840
BstV1I	GCAGC	4 cut(s)	953, 1523, 1901, 1952
BstX2I	RGATCY	1 cut(s)	960
BstYI	RGATCY	1 cut(s)	960
Bsu15I	ATCGAT	1 cut(s)	1215
BsuI	GTATCC	2 cut(s)	1634, 1820
BsuRI	GGCC	1 cut(s)	915
BsuTUI	ATCGAT	1 cut(s)	1215
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	4 cut(s)	247, 1327, 1510, 1708
BtsI	GCAGTG	3 cut(s)	369, 916, 1630
BtsIMutI	CAGTG	4 cut(s)	369, 454, 916, 1630
BveI	ACCTGC	1 cut(s)	378
Cac8I	GCNNGC	2 cut(s)	482, 1777
CfoI	GCGC	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	367
ClaI	ATCGAT	1 cut(s)	1215
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	5 cut(s)	206, 326, 706, 991, 1017
CviQI	GTAC	5 cut(s)	206, 326, 706, 991, 1017
DdeI	CTNAG	4 cut(s)	864, 1065, 1366, 1916
DpnI	GATC	4 cut(s)	192, 492, 723, 962
DpnII	GATC	4 cut(s)	190, 490, 721, 960
DriI	GACNNNNNGTC	1 cut(s)	315
EaeI	YGGCCR	1 cut(s)	913
Eam1104I	CTCTTC	3 cut(s)	39, 396, 698
Eam1105I	GACNNNNNGTC	1 cut(s)	315
EarI	CTCTTC	3 cut(s)	39, 396, 698
Eco130I	CCWWGG	1 cut(s)	1846
Eco47I	GGWCC	1 cut(s)	367
Eco57I	CTGAAG	2 cut(s)	420, 977
EcoRI	GAATTC	2 cut(s)	673, 1378
EcoRII	CCWGG	2 cut(s)	519, 1500
EcoT14I	CCWWGG	1 cut(s)	1846
ErhI	CCWWGG	1 cut(s)	1846
FalI	AAGNNNNNCTT	8 cut(s)	1257, 1289, 1328, 1360, 1538, 1570, 1896, 1928
FaqI	GGGAC	1 cut(s)	1353
FauNDI	CATATG	1 cut(s)	538
FbaI	TGATCA	1 cut(s)	490
FblI	GTMKAC	1 cut(s)	1285
Fnu4HI	GCNGC	6 cut(s)	288, 939, 942, 1512, 1890, 1966
FokI	GGATG	4 cut(s)	254, 1334, 1517, 1695
Fsp4HI	GCNGC	6 cut(s)	288, 939, 942, 1512, 1890, 1966
FspBI	CTAG	3 cut(s)	63, 425, 485
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	6 cut(s)	288, 939, 942, 1512, 1890, 1966
GsuI	CTGGAG	1 cut(s)	1254
HaeIII	GGCC	1 cut(s)	915
HapII	CCGG	1 cut(s)	1834
HgaI	GACGC	1 cut(s)	368
HhaI	GCGC	1 cut(s)	287
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HindIII	AAGCTT	1 cut(s)	1038
HinfI	GANTC	9 cut(s)	123, 154, 352, 608, 769, 862, 884, 1738, 1873
HpaII	CCGG	1 cut(s)	1834
HphI	GGTGA	3 cut(s)	526, 731, 1823
Hpy166II	GTNNAC	3 cut(s)	367, 517, 1286
Hpy188I	TCNGA	8 cut(s)	277, 1045, 1066, 1252, 1279, 1331, 1856, 1919
Hpy188III	TCNNGA	7 cut(s)	188, 881, 892, 1055, 1082, 1233, 1712
Hpy8I	GTNNAC	3 cut(s)	367, 517, 1286
HpyAV	CCTTC	8 cut(s)	450, 500, 576, 1326, 1330, 1540, 1640, 1823
HpyCH4IV	ACGT	4 cut(s)	145, 624, 1205, 1654
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 1457
HpyF3I	CTNAG	4 cut(s)	864, 1065, 1366, 1916
HpySE526I	ACGT	4 cut(s)	145, 624, 1205, 1654
HspAI	GCGC	1 cut(s)	285
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	4 cut(s)	190, 490, 721, 960
Lsp1109I	GCAGC	4 cut(s)	953, 1523, 1901, 1952
LweI	GCATC	5 cut(s)	232, 299, 1207, 1680, 1762
MaeI	CTAG	3 cut(s)	63, 425, 485
MaeII	ACGT	4 cut(s)	145, 624, 1205, 1654
MaeIII	GTNAC	7 cut(s)	80, 420, 532, 1094, 1300, 1405, 1615
MalI	GATC	4 cut(s)	192, 492, 723, 962
MboI	GATC	4 cut(s)	190, 490, 721, 960
MflI	RGATCY	1 cut(s)	960
MhlI	GDGCHC	2 cut(s)	1630, 1840
MlsI	TGGCCA	1 cut(s)	915
MluCI	AATT	6 cut(s)	673, 945, 1179, 1378, 1898, 1908
MluNI	TGGCCA	1 cut(s)	915
MlyI	GAGTC	1 cut(s)	856
MmeI	TCCRAC	3 cut(s)	70, 600, 1738
Mox20I	TGGCCA	1 cut(s)	915
MroXI	GAANNNNTTC	3 cut(s)	962, 1050, 1911
MscI	TGGCCA	1 cut(s)	915
MseI	TTAA	7 cut(s)	501, 855, 948, 1169, 1316, 1896, 1952
MslI	CAYNNNNRTG	1 cut(s)	1316
Msp20I	TGGCCA	1 cut(s)	915
MspA1I	CMGCKG	1 cut(s)	938
MspI	CCGG	1 cut(s)	1834
MspR9I	CCNGG	3 cut(s)	521, 1502, 1835
Mva1269I	GAATGC	1 cut(s)	1514
MvaI	CCWGG	2 cut(s)	521, 1502
MwoI	GCNNNNNNNGC	2 cut(s)	251, 1457
NciI	CCSGG	1 cut(s)	1835
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	4 cut(s)	190, 490, 721, 960
NlaIV	GGNNCC	1 cut(s)	442
NmuCI	GTSAC	2 cut(s)	1300, 1615
NspI	RCATGY	3 cut(s)	484, 1033, 1623
PaeI	GCATGC	1 cut(s)	484
PciI	ACATGT	1 cut(s)	1029
PctI	GAATGC	1 cut(s)	1514
PdmI	GAANNNNTTC	3 cut(s)	962, 1050, 1911
PfeI	GAWTC	8 cut(s)	123, 154, 352, 608, 769, 884, 1738, 1873
PkrI	GCNGC	6 cut(s)	289, 940, 943, 1513, 1891, 1967
PleI	GAGTC	1 cut(s)	856
PpsI	GAGTC	1 cut(s)	856
PscI	ACATGT	1 cut(s)	1029
Psp6I	CCWGG	2 cut(s)	519, 1500
PspGI	CCWGG	2 cut(s)	519, 1500
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	960
RsaI	GTAC	5 cut(s)	207, 327, 707, 992, 1018
RsaNI	GTAC	5 cut(s)	206, 326, 706, 991, 1017
RseI	CAYNNNNRTG	1 cut(s)	1316
SaqAI	TTAA	7 cut(s)	501, 855, 948, 1169, 1316, 1896, 1952
SatI	GCNGC	6 cut(s)	288, 939, 942, 1512, 1890, 1966
Sau3AI	GATC	4 cut(s)	190, 490, 721, 960
Sau96I	GGNCC	1 cut(s)	367
ScaI	AGTACT	1 cut(s)	707
SchI	GAGTC	1 cut(s)	856
ScrFI	CCNGG	3 cut(s)	521, 1502, 1835
SduI	GDGCHC	2 cut(s)	1630, 1840
SfaNI	GCATC	5 cut(s)	232, 299, 1207, 1680, 1762
SfcI	CTRYAG	2 cut(s)	374, 709
SinI	GGWCC	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	1316
SmlI	CTYRAG	1 cut(s)	1055
SmoI	CTYRAG	1 cut(s)	1055
SpeI	ACTAGT	1 cut(s)	62
SphI	GCATGC	1 cut(s)	484
Sse9I	AATT	6 cut(s)	673, 945, 1179, 1378, 1898, 1908
SsiI	CCGC	3 cut(s)	288, 652, 938
SspI	AATATT	2 cut(s)	982, 1949
SspMI	CTAG	3 cut(s)	63, 425, 485
StyD4I	CCNGG	3 cut(s)	519, 1500, 1833
StyI	CCWWGG	1 cut(s)	1846
TaiI	ACGT	4 cut(s)	148, 627, 1208, 1657
TaqI	TCGA	2 cut(s)	319, 1215
TaqII	GACCGA	1 cut(s)	877
TasI	AATT	6 cut(s)	673, 945, 1179, 1378, 1898, 1908
TatI	WGTACW	4 cut(s)	205, 705, 990, 1016
TauI	GCSGC	2 cut(s)	290, 941
TfiI	GAWTC	8 cut(s)	123, 154, 352, 608, 769, 884, 1738, 1873
Tru1I	TTAA	7 cut(s)	501, 855, 948, 1169, 1316, 1896, 1952
Tru9I	TTAA	7 cut(s)	501, 855, 948, 1169, 1316, 1896, 1952
TscAI	CASTG	4 cut(s)	369, 454, 923, 1630
TseFI	GTSAC	2 cut(s)	1300, 1615
TseI	GCWGC	4 cut(s)	941, 1511, 1889, 1965
Tsp45I	GTSAC	2 cut(s)	1300, 1615
TspGWI	ACGGA	2 cut(s)	138, 956
TspRI	CASTG	4 cut(s)	369, 454, 923, 1630
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	3 cut(s)	673, 1378, 1908
XceI	RCATGY	3 cut(s)	484, 1033, 1623
XmiI	GTMKAC	1 cut(s)	1285
XmnI	GAANNNNTTC	3 cut(s)	962, 1050, 1911
XspI	CTAG	3 cut(s)	63, 425, 485
ZrmI	AGTACT	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.