Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006842

Physical Location & Seq

Genomic Coordinates Reverse (-)

49078614 .. 49082945

Gene Structure 4332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00320440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1998 bp

ATGAAGTTGTTGTCGTGGATGGTTAGAAATGTGTATGCTACTCGCTTGAAGCTCATCATGTTCAGGACAAGTACAGTTAGACCTCTTTCTTCCATCTCTACCTCAAGTAACCAGACAGCAGATGATGATGATGAAATGAAAAGAATTATGTTAATACTCGCGAAACGTCCATGGATTCTTGGTTGTCAGAATGGGTATAATGTCTATCGGAATCAGTTCAATGTAATACAGATTTTGAACTATTTGTTTGAGGAGAGTTTGGATGCTAATCTTGCTTTATACTTTTTCAAGTGGTCAGAATGTTGCGCCGCATCAAAGCATACAGTTTGGACTGTATGTCGAATGGTACATATTTTGGTTTCTGGGAACTTGAATCATAGAGCAGTGGACCTGCTACTGCGTCTTGTGAGAAATCATGCTGAAGAAGAGACATGTAGTTTGTTACTAGAGGTTCTTTATGGAACCCACAGCGAAAGAAGGGTTTTAGAAACTGTGTGTAGCATGCTAGTCGATCAGTATATTAAGGAAGGCATGGTGAACGTGGCTTTGAATGTAACATATGAAATGAAGCACCAAAACATTTTTCCTTCTGGTGGAGTTTGCAACACTCTGCTACGAGCATTATTGGAATCAAACCAGTTGGACGTTGCATGGGATTTCTTGGAAGTTCTGCGGACAAGAGGACTGGGTTTGAATTCTTCTATCATAAGTCTCTTCATTCATAAGTACTGTAGTGAGGGTGATCTGGGAAGTGGTTTCAAGTTGCTTGTTGAAATGAAGAAGTATGGGATTCAACCTGATGTTGTTTCATATACCATTGTTATTCATTCCCTGTGCAAGATGTCTTATTTGAAAGAAGCCACTACTTTATTGTTTAAGATGACTCAGTTGGGTATCTCTCCTGATTCGATCTTGATTAGTTCAGTTATCGATGGCCACTGCCAGTTGAGACAAACAGCGGCTGCAATTAAGATACTGAAGATCTTCCGTCCTCCCCTCAATATTTTTTTGTACAATAGCTTTACTTCAAAGCTATGTACAGATGGCAACATGTTTGAAGCTACTGAACTTTTTCTTGAGATGTCTGAGTTTGGCTTGCTCCCAGATTGTGTTTGTTACTCAACCATAATAGGGGGCTACTGCAAAGTGAAAGACATGAATAGAGCTTTTCTGTATTTTGGGAAAATGTTAAAAAGTGGAATTACACCATCTGCTACCACATACACGTTGCTCATCGATGCTTACTGCAAGTCTGGAGATATAGAAATGGCCGAAGATATGTTTCAAGCAATGCTTTCAGAGGGTCTACTACCTGATATTGTGACTTACAACACTTTAATGGATGGCTTCGGAAGGAAGGGACACTTACAAAAGGTTTTTGGGGTCTTAGATATGATGAATTCTTCTAATGTTTCCCCTGATGTTGTTACATATAACACTCTCATTCATAGTCTTGCCACAAGAGGATTTGCCAATGAGGCAAAACAAATCATGTTTGAACTTATCAAAAGGGGTTTCTCCCTGGATGTAGCAGCATTTACTAATGTTATAGACGGGTTTTCAAAGAAGGGGAACTTTGAGGAAGTCTTTTTGGTGTGGTTCTGCATGAGTGAGCATGAGGTCAAACCCGATGTAGTGACATGCAGTGCTCTTCTCAATGGATACTGTAAGAAACATCAAATGGAACAAGCCAATGTTTTATTTCGCAAGATGCTTGATATTGGATTACATCCAGACCTGATACTGTATAACACTTTGATTCGTGGATTTTGTAGTGTTGGAAGCATTGATGATGCTTGCAACTTGATATGTATGATGGTTGAAAATGGTATCCTTCCCAATAACATTACTCACCGGGCACTTGTCCTTGGGTTCGGAAAAAAGAGGGTTAGGAATCCTGTTTTAGTGGCAGCTCTTAAATTGCAAGAAATTCTTCTCAGATATAGTATTCATGCTGATTTTGATAAATATTTAATACCAGAAAGCTGCACCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

665

Amino Acids

75.2

Weight (kDa)

6.97

Isoelectric Point (pI)

32.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	199 - 327	5.6e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	239 - 280	5.6e-12	PPR repeat family
PPR_1	PF12854	263 - 294	8e-08	PPR repeat
PPR_2	PF13041	266 - 315	7.9e-09	PPR repeat family
PPR_2	PF13041	334 - 382	1.3e-08	PPR repeat family
PPR_3	PF13812	357 - 416	2.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	365 - 396	2.6e-07	PPR repeat
PPR_2	PF13041	368 - 417	1.2e-14	PPR repeat family
PPR_long	PF17177	384 - 498	9.2e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	395 - 451	7.1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	400 - 431	2.4e-07	PPR repeat
PPR	PF01535	407 - 436	1e-08	PPR repeat
PPR_2	PF13041	407 - 450	9.1e-14	PPR repeat family
TPR_24	PF23276	417 - 529	2.1e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	428 - 483	4.7e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	435 - 466	1.3e-07	PPR repeat
PPR_2	PF13041	438 - 486	4.2e-16	PPR repeat family
PPR	PF01535	441 - 470	7.9e-06	PPR repeat
PPR_1	PF12854	470 - 497	4.4e-06	PPR repeat
PPR_2	PF13041	473 - 522	1e-08	PPR repeat family
PPR_2	PF13041	509 - 557	2.1e-10	PPR repeat family
PPR_1	PF12854	540 - 571	2.8e-06	PPR repeat
PPR_2	PF13041	543 - 579	7.2e-09	PPR repeat family
PPR_1	PF12854	575 - 606	3.5e-09	PPR repeat
PPR_2	PF13041	578 - 626	8e-11	PPR repeat family
PPR	PF01535	582 - 611	6.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19280 AT2G19280 AT2G19280 AT2G19280
fragaria_vesca	FvH4_7g04580
prunus_persica	Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0330001
rosa_laevigata	RLG00000029844
rosa_multiflora	Rmu_sc0000499.1_g000004 Rmu_sc0009365.1_g000009 Rmu_sc0009365.1_g000021 Rmu_sc0031998.1_g000001
rosa_roxburghii	Rroxscaffold_4G00320440
rosa_rugosa	Rorug01G0085200 Rorug01G0085300
rosa_samantha	Rh1AG103500 Rh1BG081900 Rh1CG098500 Rh1DG105900
rosa_wichuraiana	Rw1G008230 Rw1G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	399
AccI	GTMKAC	1 cut(s)	1306
AccII	CGCG	1 cut(s)	161
AciI	CCGC	3 cut(s)	309, 673, 959
AcoI	YGGCCR	2 cut(s)	934, 1269
AcsI	RAATTY	3 cut(s)	694, 1399, 1929
AcuI	CTGAAG	2 cut(s)	441, 998
AfaI	GTAC	5 cut(s)	73, 348, 728, 1013, 1039
AfiI	CCNNNNNNNGG	2 cut(s)	593, 1131
AflIII	ACRYGT	3 cut(s)	431, 1050, 1224
AhdI	GACNNNNNGTC	1 cut(s)	336
AjnI	CCWGG	1 cut(s)	1521
AjuI	GAANNNNNNNTTGG	2 cut(s)	567, 599
AluBI	AGCT	7 cut(s)	52, 1020, 1033, 1061, 1166, 1913, 1986
AluI	AGCT	7 cut(s)	52, 1020, 1033, 1061, 1166, 1913, 1986
Alw21I	GWGCWC	1 cut(s)	1651
Alw26I	GTCTC	3 cut(s)	422, 716, 943
AlwNI	CAGNNNCTG	1 cut(s)	962
AoxI	GGCC	2 cut(s)	934, 1269
ApeKI	GCWGC	4 cut(s)	962, 1532, 1910, 1986
ApoI	RAATTY	3 cut(s)	694, 1399, 1929
ArsI	GACNNNNNNTTYG	2 cut(s)	421, 453
Asp700I	GAANNNNTTC	4 cut(s)	215, 983, 1071, 1932
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	388
AsuC2I	CCSGG	1 cut(s)	1856
AsuHPI	GGTGA	3 cut(s)	547, 752, 1844
AvaII	GGWCC	1 cut(s)	388
BaeGI	GKGCMC	1 cut(s)	1861
BalI	TGGCCA	1 cut(s)	936
Bbv12I	GWGCWC	1 cut(s)	1651
BbvI	GCAGC	4 cut(s)	949, 1544, 1922, 1973
BccI	CCATC	7 cut(s)	13, 101, 926, 1037, 1216, 1337, 1810
BcgI	CGANNNNNNTGC	2 cut(s)	490, 524
BciT130I	CCWGG	1 cut(s)	1523
BciVI	GTATCC	2 cut(s)	1655, 1841
BcnI	CCSGG	1 cut(s)	1856
BcoDI	GTCTC	3 cut(s)	422, 716, 943
BfaI	CTAG	2 cut(s)	446, 506
BfmI	CTRYAG	1 cut(s)	730
BfuAI	ACCTGC	1 cut(s)	399
BfuI	GTATCC	2 cut(s)	1655, 1841
BglI	GCCNNNNNGGC	1 cut(s)	1478
BglII	AGATCT	1 cut(s)	981
BisI	GCNGC	6 cut(s)	309, 960, 963, 1533, 1911, 1987
BlsI	GCNGC	6 cut(s)	310, 961, 964, 1534, 1912, 1988
BmcAI	AGTACT	1 cut(s)	728
Bme1390I	CCNGG	2 cut(s)	1523, 1856
Bme18I	GGWCC	1 cut(s)	388
BmeRI	GACNNNNNGTC	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	388
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	2 cut(s)	1523, 1856
BmrI	ACTGGG	1 cut(s)	695
BmsI	GCATC	5 cut(s)	253, 320, 1228, 1701, 1783
BmuI	ACTGGG	1 cut(s)	695
BpmI	CTGGAG	1 cut(s)	1275
BpuEI	CTTGAG	2 cut(s)	88, 1097
BpuMI	CCSGG	1 cut(s)	1856
Bsa29I	ATCGAT	2 cut(s)	930, 1236
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	170, 1521, 1867
Bsc4I	CCNNNNNNNGG	2 cut(s)	593, 1131
Bse1I	ACTGG	3 cut(s)	637, 690, 943
Bse3DI	GCAATG	1 cut(s)	1296
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	1523
BseCI	ATCGAT	2 cut(s)	930, 1236
BseDI	CCNNGG	3 cut(s)	170, 1521, 1867
BseGI	GGATG	5 cut(s)	24, 268, 1348, 1531, 1729
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	2 cut(s)	593, 1131
BseMI	GCAATG	1 cut(s)	1296
BseMII	CTCAG	3 cut(s)	899, 1077, 1951
BseNI	ACTGG	3 cut(s)	637, 690, 943
BseRI	GAGGAG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	1861
BseXI	GCAGC	4 cut(s)	949, 1544, 1922, 1973
BsgI	GTGCAG	1 cut(s)	1972
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	2 cut(s)	936, 1271
BshVI	ATCGAT	2 cut(s)	930, 1236
BsiHKAI	GWGCWC	1 cut(s)	1651
BsiSI	CCGG	1 cut(s)	1855
BslFI	GGGAC	1 cut(s)	1374
BslI	CCNNNNNNNGG	2 cut(s)	593, 1131
BsmAI	GTCTC	3 cut(s)	422, 716, 943
BsmFI	GGGAC	1 cut(s)	1374
BsnI	GGCC	2 cut(s)	936, 1271
Bsp1286I	GDGCHC	2 cut(s)	1651, 1861
Bsp1407I	TGTACA	2 cut(s)	1011, 1037
Bsp143I	GATC	4 cut(s)	511, 742, 909, 981
Bsp19I	CCATGG	1 cut(s)	170
Bsp68I	TCGCGA	1 cut(s)	161
BspACI	CCGC	3 cut(s)	309, 673, 959
BspANI	GGCC	2 cut(s)	936, 1271
BspCNI	CTCAG	3 cut(s)	898, 1078, 1950
BspDI	ATCGAT	2 cut(s)	930, 1236
BspFNI	CGCG	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	463
BspMI	ACCTGC	1 cut(s)	399
BspQI	GCTCTTC	1 cut(s)	1656
BsrDI	GCAATG	1 cut(s)	1296
BsrGI	TGTACA	2 cut(s)	1011, 1037
BsrI	ACTGG	3 cut(s)	637, 690, 943
BssECI	CCNNGG	3 cut(s)	170, 1521, 1867
BssMI	GATC	4 cut(s)	511, 742, 909, 981
BssT1I	CCWWGG	2 cut(s)	170, 1867
Bst2UI	CCWGG	1 cut(s)	1523
Bst4CI	ACNGT	7 cut(s)	76, 325, 334, 493, 731, 1667, 1746
Bst6I	CTCTTC	3 cut(s)	420, 719, 1656
BstAUI	TGTACA	2 cut(s)	1011, 1037
BstC8I	GCNNGC	3 cut(s)	503, 1097, 1798
BstDEI	CTNAG	4 cut(s)	885, 1086, 1387, 1937
BstDSI	CCRYGG	1 cut(s)	170
BstF5I	GGATG	5 cut(s)	24, 268, 1348, 1531, 1729
BstFNI	CGCG	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	4 cut(s)	514, 745, 912, 984
BstMAI	GTCTC	3 cut(s)	422, 716, 943
BstMBI	GATC	4 cut(s)	511, 742, 909, 981
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 1478
BstNI	CCWGG	1 cut(s)	1523
BstNSI	RCATGY	4 cut(s)	435, 505, 1054, 1644
BstSCI	CCNGG	2 cut(s)	1521, 1854
BstSFI	CTRYAG	1 cut(s)	730
BstSLI	GKGCMC	1 cut(s)	1861
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	4 cut(s)	949, 1544, 1922, 1973
BstX2I	RGATCY	1 cut(s)	981
BstYI	RGATCY	1 cut(s)	981
Bsu15I	ATCGAT	2 cut(s)	930, 1236
BsuI	GTATCC	2 cut(s)	1655, 1841
BsuRI	GGCC	2 cut(s)	936, 1271
BsuTUI	ATCGAT	2 cut(s)	930, 1236
BtgI	CCRYGG	1 cut(s)	170
BtsCI	GGATG	5 cut(s)	24, 268, 1348, 1531, 1729
BtsI	GCAGTG	3 cut(s)	390, 937, 1651
BtsIMutI	CAGTG	3 cut(s)	390, 937, 1651
BtuMI	TCGCGA	1 cut(s)	161
BveI	ACCTGC	1 cut(s)	399
Cac8I	GCNNGC	3 cut(s)	503, 1097, 1798
CaiI	CAGNNNCTG	1 cut(s)	962
CfoI	GCGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	388
ClaI	ATCGAT	2 cut(s)	930, 1236
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	5 cut(s)	72, 347, 727, 1012, 1038
CviQI	GTAC	5 cut(s)	72, 347, 727, 1012, 1038
DdeI	CTNAG	4 cut(s)	885, 1086, 1387, 1937
DpnI	GATC	4 cut(s)	513, 744, 911, 983
DpnII	GATC	4 cut(s)	511, 742, 909, 981
DriI	GACNNNNNGTC	1 cut(s)	336
EaeI	YGGCCR	2 cut(s)	934, 1269
Eam1104I	CTCTTC	3 cut(s)	420, 719, 1656
Eam1105I	GACNNNNNGTC	1 cut(s)	336
EarI	CTCTTC	3 cut(s)	420, 719, 1656
Eco130I	CCWWGG	2 cut(s)	170, 1867
Eco47I	GGWCC	1 cut(s)	388
Eco57I	CTGAAG	2 cut(s)	441, 998
EcoRI	GAATTC	2 cut(s)	694, 1399
EcoRII	CCWGG	1 cut(s)	1521
EcoT14I	CCWWGG	2 cut(s)	170, 1867
ErhI	CCWWGG	2 cut(s)	170, 1867
FalI	AAGNNNNNCTT	8 cut(s)	1278, 1310, 1349, 1381, 1559, 1591, 1917, 1949
FaqI	GGGAC	1 cut(s)	1374
FauNDI	CATATG	1 cut(s)	559
FblI	GTMKAC	1 cut(s)	1306
Fnu4HI	GCNGC	6 cut(s)	309, 960, 963, 1533, 1911, 1987
FokI	GGATG	5 cut(s)	31, 275, 1355, 1538, 1716
Fsp4HI	GCNGC	6 cut(s)	309, 960, 963, 1533, 1911, 1987
FspBI	CTAG	2 cut(s)	446, 506
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	6 cut(s)	309, 960, 963, 1533, 1911, 1987
GsuI	CTGGAG	1 cut(s)	1275
HaeIII	GGCC	2 cut(s)	936, 1271
HapII	CCGG	1 cut(s)	1855
HgaI	GACGC	1 cut(s)	389
HhaI	GCGC	1 cut(s)	308
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HinfI	GANTC	9 cut(s)	175, 211, 373, 629, 790, 883, 905, 1759, 1894
HpaII	CCGG	1 cut(s)	1855
HphI	GGTGA	3 cut(s)	547, 752, 1844
Hpy166II	GTNNAC	3 cut(s)	388, 538, 1307
Hpy188I	TCNGA	8 cut(s)	189, 210, 298, 1087, 1300, 1352, 1877, 1940
Hpy188III	TCNNGA	7 cut(s)	64, 160, 902, 913, 1076, 1254, 1733
Hpy8I	GTNNAC	3 cut(s)	388, 538, 1307
HpyAV	CCTTC	7 cut(s)	471, 521, 597, 1347, 1351, 1561, 1844
HpyCH4III	ACNGT	7 cut(s)	76, 325, 334, 493, 731, 1667, 1746
HpyCH4IV	ACGT	4 cut(s)	166, 540, 645, 1226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 1478
HpyF3I	CTNAG	4 cut(s)	885, 1086, 1387, 1937
HpySE526I	ACGT	4 cut(s)	166, 540, 645, 1226
HspAI	GCGC	1 cut(s)	306
Kzo9I	GATC	4 cut(s)	511, 742, 909, 981
LguI	GCTCTTC	1 cut(s)	1656
LmnI	GCTCC	1 cut(s)	1104
Lsp1109I	GCAGC	4 cut(s)	949, 1544, 1922, 1973
LweI	GCATC	5 cut(s)	253, 320, 1228, 1701, 1783
MaeI	CTAG	2 cut(s)	446, 506
MaeII	ACGT	4 cut(s)	166, 540, 645, 1226
MaeIII	GTNAC	7 cut(s)	107, 441, 553, 1115, 1321, 1426, 1636
MalI	GATC	4 cut(s)	513, 744, 911, 983
MboI	GATC	4 cut(s)	511, 742, 909, 981
MflI	RGATCY	1 cut(s)	981
MhlI	GDGCHC	2 cut(s)	1651, 1861
MlsI	TGGCCA	1 cut(s)	936
MluCI	AATT	7 cut(s)	144, 694, 966, 1200, 1399, 1919, 1929
MluNI	TGGCCA	1 cut(s)	936
MlyI	GAGTC	1 cut(s)	877
MmeI	TCCRAC	2 cut(s)	621, 1759
Mox20I	TGGCCA	1 cut(s)	936
MroXI	GAANNNNTTC	4 cut(s)	215, 983, 1071, 1932
MscI	TGGCCA	1 cut(s)	936
MseI	TTAA	8 cut(s)	152, 522, 876, 969, 1190, 1337, 1917, 1973
MslI	CAYNNNNRTG	1 cut(s)	1337
Msp20I	TGGCCA	1 cut(s)	936
MspA1I	CMGCKG	1 cut(s)	959
MspI	CCGG	1 cut(s)	1855
MspR9I	CCNGG	2 cut(s)	1523, 1856
MvaI	CCWGG	1 cut(s)	1523
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	2 cut(s)	272, 1478
NciI	CCSGG	1 cut(s)	1856
NcoI	CCATGG	1 cut(s)	170
NdeI	CATATG	1 cut(s)	559
NdeII	GATC	4 cut(s)	511, 742, 909, 981
NlaIV	GGNNCC	1 cut(s)	463
NmuCI	GTSAC	2 cut(s)	1321, 1636
NruI	TCGCGA	1 cut(s)	161
NspI	RCATGY	4 cut(s)	435, 505, 1054, 1644
PaeI	GCATGC	1 cut(s)	505
PciI	ACATGT	2 cut(s)	431, 1050
PciSI	GCTCTTC	1 cut(s)	1656
PdmI	GAANNNNTTC	4 cut(s)	215, 983, 1071, 1932
PfeI	GAWTC	8 cut(s)	175, 211, 373, 629, 790, 905, 1759, 1894
PkrI	GCNGC	6 cut(s)	310, 961, 964, 1534, 1912, 1988
PleI	GAGTC	1 cut(s)	877
PpsI	GAGTC	1 cut(s)	877
PscI	ACATGT	2 cut(s)	431, 1050
Psp6I	CCWGG	1 cut(s)	1521
PspGI	CCWGG	1 cut(s)	1521
PspN4I	GGNNCC	1 cut(s)	463
PspPI	GGNCC	1 cut(s)	388
PstNI	CAGNNNCTG	1 cut(s)	962
PsuI	RGATCY	1 cut(s)	981
RruI	TCGCGA	1 cut(s)	161
RsaI	GTAC	5 cut(s)	73, 348, 728, 1013, 1039
RsaNI	GTAC	5 cut(s)	72, 347, 727, 1012, 1038
RseI	CAYNNNNRTG	1 cut(s)	1337
SapI	GCTCTTC	1 cut(s)	1656
SaqAI	TTAA	8 cut(s)	152, 522, 876, 969, 1190, 1337, 1917, 1973
SatI	GCNGC	6 cut(s)	309, 960, 963, 1533, 1911, 1987
Sau3AI	GATC	4 cut(s)	511, 742, 909, 981
Sau96I	GGNCC	1 cut(s)	388
ScaI	AGTACT	1 cut(s)	728
SchI	GAGTC	1 cut(s)	877
ScrFI	CCNGG	2 cut(s)	1523, 1856
SduI	GDGCHC	2 cut(s)	1651, 1861
SfaNI	GCATC	5 cut(s)	253, 320, 1228, 1701, 1783
SfcI	CTRYAG	1 cut(s)	730
SinI	GGWCC	1 cut(s)	388
SmiMI	CAYNNNNRTG	1 cut(s)	1337
SmlI	CTYRAG	2 cut(s)	103, 1076
SmoI	CTYRAG	2 cut(s)	103, 1076
SphI	GCATGC	1 cut(s)	505
Sse9I	AATT	7 cut(s)	144, 694, 966, 1200, 1399, 1919, 1929
SsiI	CCGC	3 cut(s)	309, 673, 959
SspI	AATATT	2 cut(s)	1003, 1970
SspMI	CTAG	2 cut(s)	446, 506
StyD4I	CCNGG	2 cut(s)	1521, 1854
StyI	CCWWGG	2 cut(s)	170, 1867
TaaI	ACNGT	7 cut(s)	76, 325, 334, 493, 731, 1667, 1746
TaiI	ACGT	4 cut(s)	169, 543, 648, 1229
TaqI	TCGA	5 cut(s)	340, 510, 908, 930, 1236
TasI	AATT	7 cut(s)	144, 694, 966, 1200, 1399, 1919, 1929
TatI	WGTACW	4 cut(s)	71, 726, 1011, 1037
TauI	GCSGC	2 cut(s)	311, 962
TfiI	GAWTC	8 cut(s)	175, 211, 373, 629, 790, 905, 1759, 1894
Tru1I	TTAA	8 cut(s)	152, 522, 876, 969, 1190, 1337, 1917, 1973
Tru9I	TTAA	8 cut(s)	152, 522, 876, 969, 1190, 1337, 1917, 1973
TscAI	CASTG	3 cut(s)	390, 944, 1651
TseFI	GTSAC	2 cut(s)	1321, 1636
TseI	GCWGC	4 cut(s)	962, 1532, 1910, 1986
Tsp45I	GTSAC	2 cut(s)	1321, 1636
TspGWI	ACGGA	1 cut(s)	977
TspRI	CASTG	3 cut(s)	390, 944, 1651
VpaK11BI	GGWCC	1 cut(s)	388
XapI	RAATTY	3 cut(s)	694, 1399, 1929
XceI	RCATGY	4 cut(s)	435, 505, 1054, 1644
XmiI	GTMKAC	1 cut(s)	1306
XmnI	GAANNNNTTC	4 cut(s)	215, 983, 1071, 1932
XspI	CTAG	2 cut(s)	446, 506
ZrmI	AGTACT	1 cut(s)	728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.