Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006842

Physical Location & Seq

Genomic Coordinates Reverse (-)

13871329 .. 13871949

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0085300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAACAGGTGGAATCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTTTAGAGCAGATTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCCAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCGGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTCGAATCTTCTGCTTCTTCAGCTGGTGTGATTGCTTTTAACGGGCAGAAGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCAATGCATGGTGAGGACATCTTTGGTAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGAAAAAAAAAATTTCCGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

206

Amino Acids

23.12

Weight (kDa)

9.11

Isoelectric Point (pI)

55.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	4.5e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19280 AT2G19280 AT2G19280 AT2G19280
fragaria_vesca	FvH4_7g04580
prunus_persica	Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0330001
rosa_laevigata	RLG00000029844
rosa_multiflora	Rmu_sc0000499.1_g000004 Rmu_sc0009365.1_g000009 Rmu_sc0009365.1_g000021 Rmu_sc0031998.1_g000001
rosa_roxburghii	Rroxscaffold_4G00320440
rosa_rugosa	Rorug01G0085200 Rorug01G0085300
rosa_samantha	Rh1AG103500 Rh1BG081900 Rh1CG098500 Rh1DG105900
rosa_wichuraiana	Rw1G008230 Rw1G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	335
AccB7I	CCANNNNNTGG	1 cut(s)	485
AccIII	TCCGGA	1 cut(s)	609
AciI	CCGC	4 cut(s)	82, 265, 534, 616
AclWI	GGATC	3 cut(s)	188, 363, 448
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	604
AcuI	CTGAAG	1 cut(s)	372
AfaI	GTAC	2 cut(s)	203, 337
AfiI	CCNNNNNNNGG	1 cut(s)	485
AgsI	TTSAA	2 cut(s)	220, 461
AleI	CACNNNNGTG	1 cut(s)	543
AluBI	AGCT	5 cut(s)	130, 193, 392, 568, 593
AluI	AGCT	5 cut(s)	130, 193, 392, 568, 593
Alw21I	GWGCWC	1 cut(s)	570
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	3 cut(s)	188, 363, 448
Ama87I	CYCGRG	1 cut(s)	255
Aor13HI	TCCGGA	1 cut(s)	609
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	604
Asp700I	GAANNNNTTC	1 cut(s)	465
Asp718I	GGTACC	1 cut(s)	335
AspS9I	GGNCC	2 cut(s)	153, 276
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	335, 500
AsuII	TTCGAA	1 cut(s)	372
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	2 cut(s)	153, 276
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	300
BaeI	ACNNNNGTAYC	2 cut(s)	319, 352
BanI	GGYRCC	1 cut(s)	335
BanII	GRGCYC	2 cut(s)	256, 570
BarI	GAAGNNNNNNTAC	2 cut(s)	353, 385
BbsI	GAAGAC	1 cut(s)	518
Bbv12I	GWGCWC	1 cut(s)	570
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	2 cut(s)	26, 518
BceAI	ACGGC	1 cut(s)	220
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	102
BisI	GCNGC	2 cut(s)	51, 616
BlpI	GCTNAGC	1 cut(s)	569
BlsI	GCNGC	2 cut(s)	52, 617
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	153, 276
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	153, 276
BmiI	GGNNCC	4 cut(s)	6, 155, 337, 614
BmrFI	CCNGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	518
BpmI	CTGGAG	1 cut(s)	173
Bpu1102I	GCTNAGC	1 cut(s)	569
Bpu14I	TTCGAA	1 cut(s)	372
BpuEI	CTTGAG	2 cut(s)	107, 584
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	609
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse21I	CCTNAGG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	609
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 292
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMII	CTCAG	2 cut(s)	342, 583
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	207
BshNI	GGYRCC	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	570
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	54, 610
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	255
Bsp119I	TTCGAA	1 cut(s)	372
Bsp1286I	GDGCHC	3 cut(s)	256, 300, 570
Bsp13I	TCCGGA	1 cut(s)	609
Bsp143I	GATC	6 cut(s)	106, 180, 210, 308, 355, 440
Bsp1720I	GCTNAGC	1 cut(s)	569
BspACI	CCGC	4 cut(s)	82, 265, 534, 616
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	2 cut(s)	343, 582
BspEI	TCCGGA	1 cut(s)	609
BspLI	GGNNCC	4 cut(s)	6, 155, 337, 614
BspPI	GGATC	3 cut(s)	188, 363, 448
BspT104I	TTCGAA	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	6 cut(s)	106, 180, 210, 308, 355, 440
Bst4CI	ACNGT	1 cut(s)	542
Bst6I	CTCTTC	1 cut(s)	266
BstBI	TTCGAA	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	351, 569
BstF5I	GGATG	2 cut(s)	37, 292
BstKTI	GATC	6 cut(s)	109, 183, 213, 311, 358, 443
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	6 cut(s)	106, 180, 210, 308, 355, 440
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 389, 579
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	518
BstX2I	RGATCY	2 cut(s)	180, 440
BstYI	RGATCY	2 cut(s)	180, 440
Bsu36I	CCTNAGG	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	37, 292
Cfr13I	GGNCC	2 cut(s)	153, 276
Csp6I	GTAC	2 cut(s)	202, 336
CviAII	CATG	6 cut(s)	70, 293, 301, 451, 485, 508
CviQI	GTAC	2 cut(s)	202, 336
DdeI	CTNAG	2 cut(s)	351, 569
DpnI	GATC	6 cut(s)	108, 182, 212, 310, 357, 442
DpnII	GATC	6 cut(s)	106, 180, 210, 308, 355, 440
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	568
Eco24I	GRGCYC	2 cut(s)	256, 570
Eco47I	GGWCC	2 cut(s)	153, 276
Eco53kI	GAGCTC	1 cut(s)	568
Eco57I	CTGAAG	1 cut(s)	372
Eco81I	CCTNAGG	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	568
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	486
EcoT38I	GRGCYC	2 cut(s)	256, 570
FaeI	CATG	6 cut(s)	73, 296, 304, 454, 488, 511
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	6 cut(s)	69, 292, 300, 450, 484, 507
Fnu4HI	GCNGC	2 cut(s)	51, 616
FokI	GGATG	2 cut(s)	44, 299
FriOI	GRGCYC	2 cut(s)	256, 570
Fsp4HI	GCNGC	2 cut(s)	51, 616
GluI	GCNGC	2 cut(s)	51, 616
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	2 cut(s)	54, 610
Hin1II	CATG	6 cut(s)	73, 296, 304, 454, 488, 511
HinfI	GANTC	4 cut(s)	94, 117, 172, 374
HpaII	CCGG	2 cut(s)	54, 610
HphI	GGTGA	2 cut(s)	335, 500
Hpy166II	GTNNAC	2 cut(s)	244, 279
Hpy188I	TCNGA	4 cut(s)	111, 177, 286, 523
Hpy188III	TCNNGA	4 cut(s)	220, 241, 257, 610
Hpy8I	GTNNAC	2 cut(s)	244, 279
HpyAV	CCTTC	2 cut(s)	412, 476
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	2 cut(s)	304, 484
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 389, 579
HpyF3I	CTNAG	2 cut(s)	351, 569
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	6 cut(s)	73, 296, 304, 454, 488, 511
Kpn2I	TCCGGA	1 cut(s)	609
KpnI	GGTACC	1 cut(s)	339
Kzo9I	GATC	6 cut(s)	106, 180, 210, 308, 355, 440
LmnI	GCTCC	2 cut(s)	127, 612
LpnPI	CCDG	9 cut(s)	29, 67, 73, 203, 221, 297, 363, 378, 592
Lsp1109I	GCAGC	1 cut(s)	62
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	503, 536
MalI	GATC	6 cut(s)	108, 182, 212, 310, 357, 442
MboI	GATC	6 cut(s)	106, 180, 210, 308, 355, 440
MboII	GAAGA	5 cut(s)	280, 283, 369, 378, 523
MfeI	CAATTG	1 cut(s)	340
MflI	RGATCY	2 cut(s)	180, 440
MhlI	GDGCHC	3 cut(s)	256, 300, 570
MluCI	AATT	2 cut(s)	340, 604
Mph1103I	ATGCAT	1 cut(s)	486
MroI	TCCGGA	1 cut(s)	609
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	2 cut(s)	366, 408
MslI	CAYNNNNRTG	1 cut(s)	543
MspA1I	CMGCKG	3 cut(s)	193, 392, 618
MspI	CCGG	2 cut(s)	54, 610
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	340
MwoI	GCNNNNNNNGC	3 cut(s)	79, 389, 579
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	6 cut(s)	106, 180, 210, 308, 355, 440
NlaIII	CATG	6 cut(s)	73, 296, 304, 454, 488, 511
NlaIV	GGNNCC	4 cut(s)	6, 155, 337, 614
NmuCI	GTSAC	1 cut(s)	536
NsiI	ATGCAT	1 cut(s)	486
NspI	RCATGY	1 cut(s)	73
NspV	TTCGAA	1 cut(s)	372
OliI	CACNNNNGTG	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	4 cut(s)	94, 117, 172, 374
PflMI	CCANNNNNTGG	1 cut(s)	485
PkrI	GCNGC	2 cut(s)	52, 617
PpuMI	RGGWCCY	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	570
Psp5II	RGGWCCY	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	4 cut(s)	6, 155, 337, 614
PspPI	GGNCC	2 cut(s)	153, 276
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	180, 440
PvuII	CAGCTG	2 cut(s)	193, 392
RsaI	GTAC	2 cut(s)	203, 337
RsaNI	GTAC	2 cut(s)	202, 336
RseI	CAYNNNNRTG	1 cut(s)	543
SacI	GAGCTC	1 cut(s)	570
SaqAI	TTAA	2 cut(s)	366, 408
SatI	GCNGC	2 cut(s)	51, 616
Sau3AI	GATC	6 cut(s)	106, 180, 210, 308, 355, 440
Sau96I	GGNCC	2 cut(s)	153, 276
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	3 cut(s)	256, 300, 570
SfcI	CTRYAG	1 cut(s)	102
SfuI	TTCGAA	1 cut(s)	372
SinI	GGWCC	2 cut(s)	153, 276
SmiMI	CAYNNNNRTG	1 cut(s)	543
SmlI	CTYRAG	2 cut(s)	122, 563
SmoI	CTYRAG	2 cut(s)	122, 563
Sse9I	AATT	2 cut(s)	340, 604
SsiI	CCGC	4 cut(s)	82, 265, 534, 616
SstI	GAGCTC	1 cut(s)	570
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	542
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	213, 372
TasI	AATT	2 cut(s)	340, 604
TauI	GCSGC	1 cut(s)	618
TfiI	GAWTC	4 cut(s)	94, 117, 172, 374
Tru1I	TTAA	2 cut(s)	366, 408
Tru9I	TTAA	2 cut(s)	366, 408
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	3 cut(s)	281, 461, 524
Van91I	CCANNNNNTGG	1 cut(s)	485
VpaK11BI	GGWCC	2 cut(s)	153, 276
XapI	RAATTY	1 cut(s)	604
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	465
Zsp2I	ATGCAT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.