Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031998.1

Orthogroup ID

OG0006842

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1793

Gene Structure 1792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031998.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1710 bp

atgaaggtgttgtcgtggatgattagaaatgtgtatgctactcgcttgaagttgaagcccatcatgttcagaacaagtacaatcagacctctttcttccatctctaccttaagtaaccagacagcagatgatgatgatgacgatgaaatgaaaagaatcatgttgatacttgcgaaacgtccgtggattcttggttgtcaaaatgggtataatgtctatcgggatcagttcaatgtagtacagattttgaactatttgtttgaggagagtttggatgctaatcttgctttatactttttcaagtggtcagaatgttgcgccgcatcaaagcatacagtttggactgtatgtcgaatggtacatattttggtttctgggaacttgaatcatagagcagtggacctgctacagcgtcttgtgagaaatcatgctgaagaggagacaagtagtttgttactagaagttctttatggaacccacagtgaaagaagggttttagaaactgtgtgtagcatgctagttgatcagtatattaaggaaggcatggtgaacctggctttgaatgtaacatatgaaatgaagcaccaaaacatttttccttctggtggagtttgcaacactctgctacgagcattattggaatcaaaccagttggacgttgcatgggatttcttggaagttctgcggacaagaggactgggtttgaattcttctatcataagtctcttcattcataagtactgtagtgagggtgatctgggaagtggtttcaagttgcttgttgaaatgaagaagtatgggattcaacctgatgttgtttcatataccattgttattcattccctgtgcaagatgtcttatttgaaagaagccactactttattgtttaagatgactcagttgggtatctctcctgattcggtcttgattagttcagttattgatggccactgccagttgagacaaacagcggcagcaattaagatactgaagatcttccgtcctcccctcaatatttttttgtacaatagctttacttcaaagctatgtacagatggcaacatgtttgaagcttctgaactttttcttgagatgtctgagtttggcttacttccagattgtgtttgttactcaaccataatagggggctactgcaaagtgaaagacatgaatagagcttttctgtattttggaaaaatgttaaaaagtggaattacaccatctgctaccacatacacgttgctcatcgatgcttactgcaagtctggagatatagaaatgtccgaagatatgtttcaagcaatgctttcagacggtctactacctgatattgtgacttacaacactttaatggatggcttcggaaggaagggacacttacaaaaggtttttggggtcttagatatgatgaattcttctaatgtttcccccgatgttgttacatataacactctcattcatagtcttgccacaagaggatttgccaatgaggcaaaacaaatcatgtttgaacttatcaaaaggggtttctccctggatgtagcagcattcactaatgttatagacgagttttcaaagaaggggaactttgaggaagtcttttttgtgtggttctgcatgagcgagcataaggtcaaacccgatgtagtgacatgcagtgcccttctcaatggatactgtaagaaacgtcaaatggaacaagccaatgta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

570

Amino Acids

64.61

Weight (kDa)

6.48

Isoelectric Point (pI)

31.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19280 AT2G19280 AT2G19280 AT2G19280
fragaria_vesca	FvH4_7g04580
prunus_persica	Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1 Prupe.2G051600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0330001
rosa_laevigata	RLG00000029844
rosa_multiflora	Rmu_sc0000499.1_g000004 Rmu_sc0009365.1_g000009 Rmu_sc0009365.1_g000021 Rmu_sc0031998.1_g000001
rosa_roxburghii	Rroxscaffold_4G00320440
rosa_rugosa	Rorug01G0085200 Rorug01G0085300
rosa_samantha	Rh1AG103500 Rh1BG081900 Rh1CG098500 Rh1DG105900
rosa_wichuraiana	Rw1G008230 Rw1G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	411
AccI	GTMKAC	1 cut(s)	1318
AciI	CCGC	3 cut(s)	321, 685, 971
AclWI	GGATC	1 cut(s)	231
AcoI	YGGCCR	1 cut(s)	946
AcsI	RAATTY	2 cut(s)	706, 1411
AcuI	CTGAAG	2 cut(s)	453, 1010
AfaI	GTAC	6 cut(s)	79, 240, 360, 740, 1025, 1051
AfiI	CCNNNNNNNGG	2 cut(s)	605, 1143
AflII	CTTAAG	1 cut(s)	109
AflIII	ACRYGT	2 cut(s)	1062, 1236
AhdI	GACNNNNNGTC	1 cut(s)	348
AjnI	CCWGG	2 cut(s)	552, 1533
AjuI	GAANNNNNNNTTGG	2 cut(s)	579, 611
AluBI	AGCT	4 cut(s)	1032, 1045, 1073, 1178
AluI	AGCT	4 cut(s)	1032, 1045, 1073, 1178
Alw26I	GTCTC	3 cut(s)	434, 728, 955
AlwI	GGATC	1 cut(s)	231
AoxI	GGCC	1 cut(s)	946
ApeKI	GCWGC	2 cut(s)	974, 1544
ApoI	RAATTY	2 cut(s)	706, 1411
ArsI	GACNNNNNNTTYG	2 cut(s)	433, 465
Asp700I	GAANNNNTTC	2 cut(s)	995, 1083
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	2 cut(s)	559, 764
AvaII	GGWCC	1 cut(s)	400
BaeGI	GKGCMC	1 cut(s)	1663
BalI	TGGCCA	1 cut(s)	948
BbvI	GCAGC	2 cut(s)	986, 1556
BccI	CCATC	6 cut(s)	68, 107, 938, 1049, 1228, 1349
BciT130I	CCWGG	2 cut(s)	554, 1535
BciVI	GTATCC	1 cut(s)	1667
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	3 cut(s)	434, 728, 955
BfaI	CTAG	2 cut(s)	458, 518
BfmI	CTRYAG	2 cut(s)	407, 742
BfrI	CTTAAG	1 cut(s)	109
BfuAI	ACCTGC	1 cut(s)	411
BfuI	GTATCC	1 cut(s)	1667
BglI	GCCNNNNNGGC	1 cut(s)	1490
BglII	AGATCT	1 cut(s)	993
BisI	GCNGC	4 cut(s)	321, 972, 975, 1545
BlsI	GCNGC	4 cut(s)	322, 973, 976, 1546
BmcAI	AGTACT	1 cut(s)	740
Bme1390I	CCNGG	2 cut(s)	554, 1535
Bme18I	GGWCC	1 cut(s)	400
BmeRI	GACNNNNNGTC	1 cut(s)	348
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	475
BmrFI	CCNGG	2 cut(s)	554, 1535
BmrI	ACTGGG	1 cut(s)	707
BmsI	GCATC	3 cut(s)	265, 332, 1240
BmuI	ACTGGG	1 cut(s)	707
BpmI	CTGGAG	1 cut(s)	1287
BpuEI	CTTGAG	1 cut(s)	1109
Bsa29I	ATCGAT	1 cut(s)	1248
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	182, 1533
Bsc4I	CCNNNNNNNGG	2 cut(s)	605, 1143
Bse1I	ACTGG	3 cut(s)	649, 702, 955
Bse3DI	GCAATG	1 cut(s)	1308
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	554, 1535
BseCI	ATCGAT	1 cut(s)	1248
BseDI	CCNNGG	2 cut(s)	182, 1533
BseGI	GGATG	4 cut(s)	24, 280, 1360, 1543
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	2 cut(s)	605, 1143
BseMI	GCAATG	1 cut(s)	1308
BseMII	CTCAG	2 cut(s)	911, 1089
BseNI	ACTGG	3 cut(s)	649, 702, 955
BseRI	GAGGAG	2 cut(s)	278, 452
BseSI	GKGCMC	1 cut(s)	1663
BseXI	GCAGC	2 cut(s)	986, 1556
BshFI	GGCC	1 cut(s)	948
BshVI	ATCGAT	1 cut(s)	1248
BslFI	GGGAC	1 cut(s)	1386
BslI	CCNNNNNNNGG	2 cut(s)	605, 1143
BsmAI	GTCTC	3 cut(s)	434, 728, 955
BsmFI	GGGAC	1 cut(s)	1386
BsmI	GAATGC	1 cut(s)	1547
BsnI	GGCC	1 cut(s)	948
Bsp1286I	GDGCHC	1 cut(s)	1663
Bsp1407I	TGTACA	2 cut(s)	1023, 1049
Bsp143I	GATC	4 cut(s)	223, 523, 754, 993
BspACI	CCGC	3 cut(s)	321, 685, 971
BspANI	GGCC	1 cut(s)	948
BspCNI	CTCAG	2 cut(s)	910, 1090
BspDI	ATCGAT	1 cut(s)	1248
BspLI	GGNNCC	1 cut(s)	475
BspMI	ACCTGC	1 cut(s)	411
BspPI	GGATC	1 cut(s)	231
BspTI	CTTAAG	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	1308
BsrGI	TGTACA	2 cut(s)	1023, 1049
BsrI	ACTGG	3 cut(s)	649, 702, 955
BssECI	CCNNGG	2 cut(s)	182, 1533
BssMI	GATC	4 cut(s)	223, 523, 754, 993
Bst2UI	CCWGG	2 cut(s)	554, 1535
Bst4CI	ACNGT	7 cut(s)	337, 346, 482, 505, 743, 1316, 1679
Bst6I	CTCTTC	2 cut(s)	429, 731
BstAFI	CTTAAG	1 cut(s)	109
BstAUI	TGTACA	2 cut(s)	1023, 1049
BstC8I	GCNNGC	2 cut(s)	515, 1625
BstDEI	CTNAG	3 cut(s)	897, 1098, 1399
BstDSI	CCRYGG	1 cut(s)	182
BstF5I	GGATG	4 cut(s)	24, 280, 1360, 1543
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	4 cut(s)	226, 526, 757, 996
BstMAI	GTCTC	3 cut(s)	434, 728, 955
BstMBI	GATC	4 cut(s)	223, 523, 754, 993
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 1490
BstNI	CCWGG	2 cut(s)	554, 1535
BstNSI	RCATGY	3 cut(s)	517, 1066, 1656
BstSCI	CCNGG	2 cut(s)	552, 1533
BstSFI	CTRYAG	2 cut(s)	407, 742
BstSLI	GKGCMC	1 cut(s)	1663
BstV1I	GCAGC	2 cut(s)	986, 1556
BstX2I	RGATCY	1 cut(s)	993
BstYI	RGATCY	1 cut(s)	993
Bsu15I	ATCGAT	1 cut(s)	1248
BsuI	GTATCC	1 cut(s)	1667
BsuRI	GGCC	1 cut(s)	948
BsuTUI	ATCGAT	1 cut(s)	1248
BtgI	CCRYGG	1 cut(s)	182
BtsCI	GGATG	4 cut(s)	24, 280, 1360, 1543
BtsI	GCAGTG	3 cut(s)	402, 949, 1663
BtsIMutI	CAGTG	4 cut(s)	402, 487, 949, 1663
BveI	ACCTGC	1 cut(s)	411
Cac8I	GCNNGC	2 cut(s)	515, 1625
CfoI	GCGC	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	400
ClaI	ATCGAT	1 cut(s)	1248
CseI	GACGC	1 cut(s)	401
Csp6I	GTAC	6 cut(s)	78, 239, 359, 739, 1024, 1050
CviQI	GTAC	6 cut(s)	78, 239, 359, 739, 1024, 1050
DdeI	CTNAG	3 cut(s)	897, 1098, 1399
DpnI	GATC	4 cut(s)	225, 525, 756, 995
DpnII	GATC	4 cut(s)	223, 523, 754, 993
DriI	GACNNNNNGTC	1 cut(s)	348
EaeI	YGGCCR	1 cut(s)	946
Eam1104I	CTCTTC	2 cut(s)	429, 731
Eam1105I	GACNNNNNGTC	1 cut(s)	348
EarI	CTCTTC	2 cut(s)	429, 731
Eco47I	GGWCC	1 cut(s)	400
Eco57I	CTGAAG	2 cut(s)	453, 1010
EcoRI	GAATTC	2 cut(s)	706, 1411
EcoRII	CCWGG	2 cut(s)	552, 1533
FalI	AAGNNNNNCTT	6 cut(s)	1290, 1322, 1361, 1393, 1571, 1603
FaqI	GGGAC	1 cut(s)	1386
FauNDI	CATATG	1 cut(s)	571
FbaI	TGATCA	1 cut(s)	523
FblI	GTMKAC	1 cut(s)	1318
Fnu4HI	GCNGC	4 cut(s)	321, 972, 975, 1545
FokI	GGATG	4 cut(s)	31, 287, 1367, 1550
Fsp4HI	GCNGC	4 cut(s)	321, 972, 975, 1545
FspBI	CTAG	2 cut(s)	458, 518
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	4 cut(s)	321, 972, 975, 1545
GsuI	CTGGAG	1 cut(s)	1287
HaeIII	GGCC	1 cut(s)	948
HgaI	GACGC	1 cut(s)	401
HhaI	GCGC	1 cut(s)	320
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HindIII	AAGCTT	1 cut(s)	1071
HinfI	GANTC	7 cut(s)	156, 187, 385, 641, 802, 895, 917
HphI	GGTGA	2 cut(s)	559, 764
Hpy166II	GTNNAC	3 cut(s)	400, 550, 1319
Hpy188I	TCNGA	8 cut(s)	71, 86, 310, 1078, 1099, 1285, 1312, 1364
Hpy188III	TCNNGA	6 cut(s)	221, 914, 925, 1088, 1115, 1266
Hpy8I	GTNNAC	3 cut(s)	400, 550, 1319
HpyAV	CCTTC	7 cut(s)	483, 533, 609, 1359, 1363, 1573, 1673
HpyCH4III	ACNGT	7 cut(s)	337, 346, 482, 505, 743, 1316, 1679
HpyCH4IV	ACGT	4 cut(s)	178, 657, 1238, 1687
HpyCH4V	TGCA	7 cut(s)	615, 662, 849, 1155, 1260, 1617, 1656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 1490
HpyF3I	CTNAG	3 cut(s)	897, 1098, 1399
HpySE526I	ACGT	4 cut(s)	178, 657, 1238, 1687
HspAI	GCGC	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	4 cut(s)	223, 523, 754, 993
Lsp1109I	GCAGC	2 cut(s)	986, 1556
LweI	GCATC	3 cut(s)	265, 332, 1240
MaeI	CTAG	2 cut(s)	458, 518
MaeII	ACGT	4 cut(s)	178, 657, 1238, 1687
MaeIII	GTNAC	7 cut(s)	113, 453, 565, 1127, 1333, 1438, 1648
MalI	GATC	4 cut(s)	225, 525, 756, 995
MboI	GATC	4 cut(s)	223, 523, 754, 993
MboII	GAAGA	9 cut(s)	87, 446, 702, 718, 802, 988, 1003, 1298, 1407
MflI	RGATCY	1 cut(s)	993
MhlI	GDGCHC	1 cut(s)	1663
MlsI	TGGCCA	1 cut(s)	948
MluCI	AATT	4 cut(s)	706, 978, 1212, 1411
MluNI	TGGCCA	1 cut(s)	948
MlyI	GAGTC	1 cut(s)	889
MmeI	TCCRAC	1 cut(s)	633
Mox20I	TGGCCA	1 cut(s)	948
MroXI	GAANNNNTTC	2 cut(s)	995, 1083
MscI	TGGCCA	1 cut(s)	948
MseI	TTAA	6 cut(s)	110, 534, 888, 981, 1202, 1349
MslI	CAYNNNNRTG	1 cut(s)	1349
Msp20I	TGGCCA	1 cut(s)	948
MspA1I	CMGCKG	1 cut(s)	971
MspCI	CTTAAG	1 cut(s)	109
MspR9I	CCNGG	2 cut(s)	554, 1535
Mva1269I	GAATGC	1 cut(s)	1547
MvaI	CCWGG	2 cut(s)	554, 1535
MwoI	GCNNNNNNNGC	2 cut(s)	284, 1490
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	4 cut(s)	223, 523, 754, 993
NlaIV	GGNNCC	1 cut(s)	475
NmuCI	GTSAC	2 cut(s)	1333, 1648
NspI	RCATGY	3 cut(s)	517, 1066, 1656
PaeI	GCATGC	1 cut(s)	517
PciI	ACATGT	1 cut(s)	1062
PctI	GAATGC	1 cut(s)	1547
PdmI	GAANNNNTTC	2 cut(s)	995, 1083
PfeI	GAWTC	6 cut(s)	156, 187, 385, 641, 802, 917
PkrI	GCNGC	4 cut(s)	322, 973, 976, 1546
PleI	GAGTC	1 cut(s)	889
PpsI	GAGTC	1 cut(s)	889
PscI	ACATGT	1 cut(s)	1062
Psp6I	CCWGG	2 cut(s)	552, 1533
PspGI	CCWGG	2 cut(s)	552, 1533
PspN4I	GGNNCC	1 cut(s)	475
PspPI	GGNCC	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	993
RsaI	GTAC	6 cut(s)	79, 240, 360, 740, 1025, 1051
RsaNI	GTAC	6 cut(s)	78, 239, 359, 739, 1024, 1050
RseI	CAYNNNNRTG	1 cut(s)	1349
SaqAI	TTAA	6 cut(s)	110, 534, 888, 981, 1202, 1349
SatI	GCNGC	4 cut(s)	321, 972, 975, 1545
Sau3AI	GATC	4 cut(s)	223, 523, 754, 993
Sau96I	GGNCC	1 cut(s)	400
ScaI	AGTACT	1 cut(s)	740
SchI	GAGTC	1 cut(s)	889
ScrFI	CCNGG	2 cut(s)	554, 1535
SduI	GDGCHC	1 cut(s)	1663
SfaNI	GCATC	3 cut(s)	265, 332, 1240
SfcI	CTRYAG	2 cut(s)	407, 742
SinI	GGWCC	1 cut(s)	400
SmiMI	CAYNNNNRTG	1 cut(s)	1349
SmlI	CTYRAG	2 cut(s)	109, 1088
SmoI	CTYRAG	2 cut(s)	109, 1088
SphI	GCATGC	1 cut(s)	517
Sse9I	AATT	4 cut(s)	706, 978, 1212, 1411
SsiI	CCGC	3 cut(s)	321, 685, 971
SspI	AATATT	1 cut(s)	1015
SspMI	CTAG	2 cut(s)	458, 518
StyD4I	CCNGG	2 cut(s)	552, 1533
TaaI	ACNGT	7 cut(s)	337, 346, 482, 505, 743, 1316, 1679
TaiI	ACGT	4 cut(s)	181, 660, 1241, 1690
TaqI	TCGA	2 cut(s)	352, 1248
TaqII	GACCGA	1 cut(s)	910
TasI	AATT	4 cut(s)	706, 978, 1212, 1411
TatI	WGTACW	5 cut(s)	77, 238, 738, 1023, 1049
TauI	GCSGC	2 cut(s)	323, 974
TfiI	GAWTC	6 cut(s)	156, 187, 385, 641, 802, 917
Tru1I	TTAA	6 cut(s)	110, 534, 888, 981, 1202, 1349
Tru9I	TTAA	6 cut(s)	110, 534, 888, 981, 1202, 1349
TscAI	CASTG	4 cut(s)	402, 487, 956, 1663
TseFI	GTSAC	2 cut(s)	1333, 1648
TseI	GCWGC	2 cut(s)	974, 1544
Tsp45I	GTSAC	2 cut(s)	1333, 1648
TspGWI	ACGGA	2 cut(s)	171, 989
TspRI	CASTG	4 cut(s)	402, 487, 956, 1663
Vha464I	CTTAAG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	400
XapI	RAATTY	2 cut(s)	706, 1411
XceI	RCATGY	3 cut(s)	517, 1066, 1656
XmiI	GTMKAC	1 cut(s)	1318
XmnI	GAANNNNTTC	2 cut(s)	995, 1083
XspI	CTAG	2 cut(s)	458, 518
ZrmI	AGTACT	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.