Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006693

Physical Location & Seq

Genomic Coordinates Forward (+)

8058219 .. 8058885

Gene Structure 667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G062200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTGTGGCTGCCGTCGTCAAATTTTAGAGGCAAATTTTTTGGATTTTGATATGTATGTATCTTACATGGTAGTAATTAAAGCACTTTTCAAACTGGGGAAGCTGCAGGAGGATACCCAGATCACGTATAATATTCTGATCAAATGTTTCTGCAGAGCTCGAGACTTCTTGAAAGCTTATCAGTTGCATAATGAGATGTTGGTTCATAATCTTGAGCCTACTCCTGTTACATATAATGTTCTCATCAGTGGTCTTTGTGTATATGGCGACCTAATGGATGCTGACAGGCTACTGGTTTCTCTTTGCGACTGCAATATCAATTTGACAAAAGTTGCTTATACCACATTGATCAAAGCACATTGTGCAAAGGGTGATGTACATAGGGCAGTGGAGCTCTTCCATCAAATGGTGAAGAAAGGATTTGAAATCTCCATTCGGGATTATGCAAAAGAACTGTGTGAGGTGATGCTGAATACTTTTCGTCATGTTGGTGATCTCAATTCAGTAGCTGAGCTTCTAGCTGAGATGTTCAAACTTGGCTTTCTTCATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

185

Amino Acids

21.18

Weight (kDa)

6.37

Isoelectric Point (pI)

24.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13630 AT1G13630 AT1G13630 AT1G13630 AT1G13630 AT1G13630
fragaria_vesca	FvH4_4g29120
malus_domestica	MD13G1055600.v1.1 MD16G1054700.v1.1
prunus_persica	Prupe.2G062100_v2.0.a1 Prupe.2G062200_v2.0.a1 Prupe.2G062300_v2.0.a1 Prupe.7G020200_v2.0.a1 Prupe.7G020300_v2.0.a1
pyrus_communis	pycom16g04760
rosa_chinensis	RchiOBHm_Chr4g0437181
rosa_laevigata	RLG00000006457
rosa_multiflora	Rmu_co8390257.1_g000001 Rmu_sc0000591.1_g000006
rosa_roxburghii	Rroxscaffold_5G00378320
rosa_rugosa	Rorug04G0298500.1
rosa_samantha	Rh4AG353500 Rh4BG363300 Rh4CG377500 Rh4DG357300
rosa_wichuraiana	Rw4G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	406
AcsI	RAATTY	2 cut(s)	21, 34
AdeI	CACNNNGTG	1 cut(s)	362
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	406
AgsI	TTSAA	4 cut(s)	91, 172, 425, 532
AluBI	AGCT	7 cut(s)	103, 158, 176, 394, 509, 514, 521
AluI	AGCT	7 cut(s)	103, 158, 176, 394, 509, 514, 521
Alw21I	GWGCWC	2 cut(s)	160, 396
Alw26I	GTCTC	1 cut(s)	156
AlwNI	CAGNNNCTG	1 cut(s)	509
Ama87I	CYCGRG	1 cut(s)	159
ApeKI	GCWGC	2 cut(s)	9, 103
ApoI	RAATTY	2 cut(s)	21, 34
AsuHPI	GGTGA	4 cut(s)	383, 421, 475, 503
AvaI	CYCGRG	1 cut(s)	159
BanII	GRGCYC	2 cut(s)	160, 396
BarI	GAAGNNNNNNTAC	2 cut(s)	498, 530
Bbv12I	GWGCWC	2 cut(s)	160, 396
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	1 cut(s)	408
BciVI	GTATCC	1 cut(s)	106
BclI	TGATCA	2 cut(s)	138, 348
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	518
BfmI	CTRYAG	2 cut(s)	104, 151
BfuI	GTATCC	1 cut(s)	106
BisI	GCNGC	2 cut(s)	10, 104
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	2 cut(s)	11, 105
BmeT110I	CYCGRG	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	268, 456
BmuI	ACTGGG	1 cut(s)	104
Bpu1102I	GCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	1 cut(s)	233
BsaAI	YACGTR	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse1I	ACTGG	2 cut(s)	99, 297
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMII	CTCAG	2 cut(s)	501, 513
BseNI	ACTGG	2 cut(s)	99, 297
BseXI	GCAGC	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	160, 396
BsiHKCI	CYCGRG	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	1 cut(s)	156
BsoBI	CYCGRG	1 cut(s)	159
Bsp1286I	GDGCHC	2 cut(s)	160, 396
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	4 cut(s)	120, 138, 348, 493
Bsp1720I	GCTNAGC	1 cut(s)	510
BspCNI	CTCAG	2 cut(s)	502, 514
BspHI	TCATGA	1 cut(s)	547
BspMAI	CTGCAG	2 cut(s)	108, 155
BspQI	GCTCTTC	1 cut(s)	401
BsrGI	TGTACA	1 cut(s)	376
BsrI	ACTGG	2 cut(s)	99, 297
BssMI	GATC	4 cut(s)	120, 138, 348, 493
Bst4CI	ACNGT	1 cut(s)	456
Bst6I	CTCTTC	1 cut(s)	401
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstAUI	TGTACA	1 cut(s)	376
BstBAI	YACGTR	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	510, 522
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	4 cut(s)	123, 141, 351, 496
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	4 cut(s)	120, 138, 348, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstSFI	CTRYAG	2 cut(s)	104, 151
BstV1I	GCAGC	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	253, 393
CaiI	CAGNNNCTG	1 cut(s)	509
CciI	TCATGA	1 cut(s)	547
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	3 cut(s)	67, 485, 548
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	2 cut(s)	510, 522
DpnI	GATC	4 cut(s)	122, 140, 350, 495
DpnII	GATC	4 cut(s)	120, 138, 348, 493
DraIII	CACNNNGTG	1 cut(s)	362
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
Ecl136II	GAGCTC	2 cut(s)	158, 394
Eco24I	GRGCYC	2 cut(s)	160, 396
Eco53kI	GAGCTC	2 cut(s)	158, 394
Eco88I	CYCGRG	1 cut(s)	159
EcoICRI	GAGCTC	2 cut(s)	158, 394
EcoT38I	GRGCYC	2 cut(s)	160, 396
FaeI	CATG	3 cut(s)	70, 488, 551
FatI	CATG	3 cut(s)	66, 484, 547
FbaI	TGATCA	2 cut(s)	138, 348
Fnu4HI	GCNGC	2 cut(s)	10, 104
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	2 cut(s)	160, 396
Fsp4HI	GCNGC	2 cut(s)	10, 104
FspBI	CTAG	1 cut(s)	518
GluI	GCNGC	2 cut(s)	10, 104
Hin1II	CATG	3 cut(s)	70, 488, 551
HindIII	AAGCTT	1 cut(s)	174
HphI	GGTGA	4 cut(s)	383, 421, 475, 503
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	5 cut(s)	161, 169, 212, 437, 548
Hpy99I	CGWCG	1 cut(s)	18
HpyCH4III	ACNGT	1 cut(s)	456
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	6 cut(s)	106, 153, 187, 312, 365, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	2 cut(s)	510, 522
HpySE526I	ACGT	1 cut(s)	125
Hsp92II	CATG	3 cut(s)	70, 488, 551
Ksp22I	TGATCA	2 cut(s)	138, 348
Kzo9I	GATC	4 cut(s)	120, 138, 348, 493
LguI	GCTCTTC	1 cut(s)	401
LmnI	GCTCC	1 cut(s)	391
LpnPI	CCDG	6 cut(s)	80, 92, 131, 237, 271, 278
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	2 cut(s)	268, 456
MaeI	CTAG	1 cut(s)	518
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	4 cut(s)	122, 140, 350, 495
MboI	GATC	4 cut(s)	120, 138, 348, 493
MboII	GAAGA	3 cut(s)	388, 424, 536
MhlI	GDGCHC	2 cut(s)	160, 396
MluCI	AATT	5 cut(s)	21, 34, 75, 319, 499
MnlI	CCTC	3 cut(s)	22, 103, 454
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	489
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	4 cut(s)	120, 138, 348, 493
NlaIII	CATG	3 cut(s)	70, 488, 551
PaeR7I	CTCGAG	1 cut(s)	159
PagI	TCATGA	1 cut(s)	547
PciSI	GCTCTTC	1 cut(s)	401
PflMI	CCANNNNNTGG	1 cut(s)	406
PkrI	GCNGC	2 cut(s)	11, 105
Ppu21I	YACGTR	1 cut(s)	126
Psp124BI	GAGCTC	2 cut(s)	160, 396
PstI	CTGCAG	2 cut(s)	108, 155
PstNI	CAGNNNCTG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	489
SacI	GAGCTC	2 cut(s)	160, 396
SapI	GCTCTTC	1 cut(s)	401
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	2 cut(s)	10, 104
Sau3AI	GATC	4 cut(s)	120, 138, 348, 493
SduI	GDGCHC	2 cut(s)	160, 396
SfaNI	GCATC	2 cut(s)	268, 456
SfcI	CTRYAG	2 cut(s)	104, 151
Sfr274I	CTCGAG	1 cut(s)	159
SlaI	CTCGAG	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	159, 212
SmoI	CTYRAG	2 cut(s)	159, 212
Sse9I	AATT	5 cut(s)	21, 34, 75, 319, 499
SspI	AATATT	1 cut(s)	133
SspMI	CTAG	1 cut(s)	518
SstI	GAGCTC	2 cut(s)	160, 396
TaaI	ACNGT	1 cut(s)	456
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	1 cut(s)	160
TasI	AATT	5 cut(s)	21, 34, 75, 319, 499
TatI	WGTACW	1 cut(s)	376
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	2 cut(s)	253, 393
TseI	GCWGC	2 cut(s)	9, 103
TspDTI	ATGAA	2 cut(s)	194, 536
TspRI	CASTG	2 cut(s)	253, 393
Van91I	CCANNNNNTGG	1 cut(s)	406
XapI	RAATTY	2 cut(s)	21, 34
XhoI	CTCGAG	1 cut(s)	159
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.