Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006693

Physical Location & Seq

Genomic Coordinates Reverse (-)

58779419 .. 58782291

Gene Structure 2873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00378320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2472 bp

ATGCTCAATCACTTCCATAAATGGAAGAAGCCCATCCATTTTCTTCAAAAATTTCGAACCCTCTCTTCCCTCATCTTCACTAAATCCTCAGCCTTTGCCGCAAAGCCCACCGCCGGCCCAAGCAGCACGACCAATGTCTCCGAACTCATCACCGGCCTGAGAATCTTGGGTTTGGGTCGAATTAACGGTGATCATTACTATAGAAATATTATTTCGACTTTGAATCAGACCCAGGTGGATATTATTATCGAAAGGTTGAACCTTGAGGACCCTGAATCGGGTTTCGGTTTCTTCAATTTGTTGAGGAATGACTACGGTTTTCGGCCTTCAAGGGTTTCGAGTTTCGCAGTTTCTCATGTTTTAGCGGCGAATAGGTGGTTTGAGGAGTTGCGTTTGGTTATGAAGCAAATGGTGGAGGAGGAAGGTTCTGGTTCTGCAACATCACTTTGTGAGCTGCTATTGAGTAGATTTAGGGACTGGGACTCGAGTGGCATAGTGTGGGATGTTTTGGTGTTTTCTTATTCGAGAAGTGAGATGGTTTATGATGCCCTGACTGTTCTTGCTAAGATGAAAGATCTGGATTTGAAAGTTTCCACAGCAACGTATAATTGCTTGTTGCACAATTTAAGGCACACGGATATCATGTGGAATGTGTATGATGAAATTAAGGACAGTGGAACTCCTCAGAGTGAGTACACTACTTCTATACTTATAGATGGACTGTGTGAGCAAGCCAGCATACGAGATGCAGTTTTGTTTCTCTTGGATGCTCAAAGGAAGGAGAATGGGCCTTCAGTTGTTCCCTTCAATACCATTATGTCGAGGTTCTGTAAATTGGGTTTTGTGGATATTGCCAAGTCATTTTTTTGTATGATATTCAAGTATGGACTACTTCCTGATTTGTACAGTTATAATATTCTTATTCATGGGCTGTGTGTAGCAGGTTCATTGGAAGAAGCTTTGGAGTTTACAAAAGACATGGAGAGGCATGGGCTACACCCTGACACAGTGACCTACAATATTCTTTGCAAAGGGTTTCATCTACTTGGTTTAATGACTGGAGCTCAGCAGGTCATTCAGAAAATGTTGGTTAAAGGGTTAAATCCTGATCATGTTACATATACAATTCTAATATGTGGGCACTGCCATTTTGGGAATATTGAGGAAGCCCTTAAGCTGCGGGAAGAGATGCTTTCAAGGGGTTTTCAATTGAGTGTCATTTTGTATAGTGTACTGCTTAGCAGTTTGTGTAAAAGTGGACCAATAGAAGAAGCATTGAGATTGCATTATGAGATGGAAGCTGTTGGCTTGGAACCAGATCTTATAACATGTTCTATTCTCATTCATGGCCTATGCAAGCAAGGAAGTGTTCAAAGGGCTATTGAAATATATAGAGAAATGTACTTGAAGAGAATACTTCCCCATTACTCTGCACACCGTGCTATTCTTTTAGGTCTGCGCGAGAAAGGAGATATATCTGAGGCAAGGAAGTATTTTGATACTCTAGCAACAATCACAGAGGATATTGTTTTGTATAATATTATGATGGATGGATATGTAAAACTTGGTAATATTGCAGCAGCCTTACAGTTATATGAACAAGCAGTTGAAAAAGGAATAACTCCTAGTGTTGTCACTTTCAATACGCTTATGTATGGTTTCTGCAACAGTGGAAAACTAGTTGAGGCCCAACGGATGTTGAATACCATTGAGCTGCATGGAATGCTACCCAGTCCAGTTACTTATACGACTCTAATGAATGGTTACTGTGAACAGGGAAACATTCATGGCATGCTTGAATTGCTCCTGGAGATGAAAGCTAAAGCTGTAGATCCAACTCATGTAACTTATACTGTAATTATCAAAGGACTCTGCAGACAGAGGAAGCTGCAAGAGGCTGTCCACGTAGTTGAGGAAATGTATGCTAAGGACCTAACCCCAGATCAGATCACATATAATACCATCATTCAATGTTTCTGCAGAGCTCGAGACTTGAACAAAGCTTTTCAGTTGCACAATGAGATGTTAATGCATAATCTCGAGCCTACTCCTGTTACATATAATGTTCTCATCAATGGTCTTTGTGTATATGGTGACCTAAATGATGCTGATAAGCTATTGGTTTTTCTTGACAACCACAAGATCAATCTAAGAAAAGTTGCTTATACCACATTAATCAAAGCACATTGTGCAAAGGGTTATGCACTTAGAGCAGTGGAGCTCTTCGATCAGATGGTGGAGAAAGGATTTGAAATCTCCATAAGAGATTATAGTGCTGTAATTAATAGATTGTGCAAAAGGTCTCTAATAACTGAAGCAAAATATTTTTTCTGTATGATGCTATCTGATGGGATATCTCCTGATCATGAGCTTTGTAAGGTGATGCTCAATGCTTTCTGTCAAGATGGTGATTCAAGTTCAGTATATGAACTCCTTGCTGAGATGATCAAATCTGGCATTCTTCCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

823

Amino Acids

93.22

Weight (kDa)

6.15

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	264 - 312	1.5e-10	PPR repeat family
PPR_1	PF12854	296 - 328	1.6e-09	PPR repeat
PPR_3	PF13812	296 - 344	9.4e-07	Pentatricopeptide repeat domain
PPR	PF01535	302 - 332	6.3e-07	PPR repeat
PPR_2	PF13041	303 - 346	3.5e-13	PPR repeat family
PPR_2	PF13041	350 - 383	3.7e-06	PPR repeat family
PPR_1	PF12854	365 - 397	2.7e-11	PPR repeat
PPR_2	PF13041	369 - 418	1.6e-12	PPR repeat family
PPR	PF01535	372 - 402	3.4e-08	PPR repeat
PPR_2	PF13041	405 - 453	1.1e-11	PPR repeat family
PPR_1	PF12854	436 - 467	1.2e-08	PPR repeat
PPR_3	PF13812	506 - 552	5.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	508 - 556	1.6e-14	PPR repeat family
PPR_1	PF12854	538 - 569	2.7e-09	PPR repeat
PPR_2	PF13041	542 - 590	4.5e-13	PPR repeat family
PPR_3	PF13812	570 - 622	9.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	574 - 606	2.6e-06	PPR repeat
PPR_2	PF13041	577 - 626	4.1e-16	PPR repeat family
PPR	PF01535	580 - 608	2.6e-06	PPR repeat
TPR_24	PF23276	581 - 674	1.1e-09	Fungal tetratrico peptide repeats
PPR_long	PF17177	598 - 724	4.4e-14	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	610 - 640	1.1e-08	PPR repeat
PPR_2	PF13041	615 - 654	6.8e-10	PPR repeat family
PPR_3	PF13812	636 - 692	6.3e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	643 - 675	9.3e-12	PPR repeat
PPR_2	PF13041	647 - 695	5.2e-18	PPR repeat family
TPR_24	PF23276	648 - 744	6.6e-07	Fungal tetratrico peptide repeats
PPR	PF01535	650 - 679	1.1e-06	PPR repeat
PPR_1	PF12854	679 - 707	2.7e-06	PPR repeat
PPR_2	PF13041	720 - 766	3.9e-09	PPR repeat family
PPR	PF01535	720 - 750	1.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13630 AT1G13630 AT1G13630 AT1G13630 AT1G13630 AT1G13630
fragaria_vesca	FvH4_4g29120
malus_domestica	MD13G1055600.v1.1 MD16G1054700.v1.1
prunus_persica	Prupe.2G062100_v2.0.a1 Prupe.2G062200_v2.0.a1 Prupe.2G062300_v2.0.a1 Prupe.7G020200_v2.0.a1 Prupe.7G020300_v2.0.a1
pyrus_communis	pycom16g04760
rosa_chinensis	RchiOBHm_Chr4g0437181
rosa_laevigata	RLG00000006457
rosa_multiflora	Rmu_co8390257.1_g000001 Rmu_sc0000591.1_g000006
rosa_roxburghii	Rroxscaffold_5G00378320
rosa_rugosa	Rorug04G0298500.1
rosa_samantha	Rh4AG353500 Rh4BG363300 Rh4CG377500 Rh4DG357300
rosa_wichuraiana	Rw4G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	912, 1325
Acc36I	ACCTGC	2 cut(s)	932, 1060
AccII	CGCG	1 cut(s)	1461
AciI	CCGC	4 cut(s)	99, 111, 365, 1180
AclWI	GGATC	1 cut(s)	1826
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	2 cut(s)	777, 2334
AdeI	CACNNNGTG	3 cut(s)	449, 1439, 2189
AfaI	GTAC	4 cut(s)	695, 905, 1233, 1403
AfiI	CCNNNNNNNGG	3 cut(s)	113, 277, 278
AflII	CTTAAG	1 cut(s)	1172
AflIII	ACRYGT	1 cut(s)	1328
AhlI	ACTAGT	1 cut(s)	1678
AjnI	CCWGG	2 cut(s)	231, 1806
Alw21I	GWGCWC	3 cut(s)	1066, 1987, 2223
Alw26I	GTCTC	3 cut(s)	142, 1983, 2307
AlwI	GGATC	1 cut(s)	1826
Ama87I	CYCGRG	3 cut(s)	484, 1986, 2039
AoxI	GGCC	6 cut(s)	115, 154, 323, 788, 1348, 1686
ApeKI	GCWGC	7 cut(s)	123, 454, 1177, 1577, 1580, 1714, 1888
ApoI	RAATTY	1 cut(s)	50
AseI	ATTAAT	2 cut(s)	2174, 2283
AspLEI	GCGC	1 cut(s)	1461
AspS9I	GGNCC	6 cut(s)	116, 268, 788, 1259, 1687, 1930
AsuHPI	GGTGA	5 cut(s)	142, 200, 2105, 2392, 2420
AsuII	TTCGAA	1 cut(s)	55
AvaI	CYCGRG	3 cut(s)	484, 1986, 2039
AvaII	GGWCC	3 cut(s)	268, 1259, 1930
BaeGI	GKGCMC	1 cut(s)	1143
BanII	GRGCYC	3 cut(s)	1066, 1987, 2223
Bbv12I	GWGCWC	3 cut(s)	1066, 1987, 2223
BbvCI	CCTCAGC	1 cut(s)	88
BbvI	GCAGC	7 cut(s)	135, 441, 1164, 1589, 1592, 1701, 1875
BciT130I	CCWGG	2 cut(s)	233, 1808
BclI	TGATCA	4 cut(s)	190, 1108, 2362, 2445
BcoDI	GTCTC	3 cut(s)	142, 1983, 2307
BcuI	ACTAGT	1 cut(s)	1678
BfaI	CTAG	3 cut(s)	1505, 1626, 1679
BfmI	CTRYAG	4 cut(s)	199, 1827, 1873, 1978
BfrI	CTTAAG	1 cut(s)	1172
BfuAI	ACCTGC	2 cut(s)	932, 1060
BglII	AGATCT	2 cut(s)	574, 1318
BisI	GCNGC	9 cut(s)	99, 124, 366, 455, 1178, 1578, 1581, 1715, 1889
BlpI	GCTNAGC	2 cut(s)	1065, 1238
BlsI	GCNGC	9 cut(s)	100, 125, 367, 456, 1179, 1579, 1582, 1716, 1890
Bme1390I	CCNGG	2 cut(s)	233, 1808
Bme18I	GGWCC	3 cut(s)	268, 1259, 1930
BmeT110I	CYCGRG	3 cut(s)	484, 1986, 2039
BmgT120I	GGNCC	6 cut(s)	116, 268, 788, 1259, 1687, 1930
BmiI	GGNNCC	2 cut(s)	270, 1314
BmrFI	CCNGG	2 cut(s)	233, 1808
BmrI	ACTGGG	2 cut(s)	487, 1725
BmsI	GCATC	7 cut(s)	535, 736, 757, 1179, 2095, 2328, 2373
BmuI	ACTGGG	2 cut(s)	487, 1725
BoxI	GACNNNNGTC	1 cut(s)	134
BpmI	CTGGAG	2 cut(s)	1080, 1829
Bpu10I	CCTNAGC	2 cut(s)	88, 1926
Bpu1102I	GCTNAGC	2 cut(s)	1065, 1238
Bpu14I	TTCGAA	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	284
BsaAI	YACGTR	1 cut(s)	1906
BsaI	GGTCTC	1 cut(s)	2307
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 277, 278
Bse118I	RCCGGY	2 cut(s)	113, 152
Bse1I	ACTGG	4 cut(s)	482, 1063, 1731, 1736
BseBI	CCWGG	2 cut(s)	233, 1808
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	5 cut(s)	33, 508, 772, 1555, 1701
BseLI	CCNNNNNNNGG	3 cut(s)	113, 277, 278
BseMII	CTCAG	6 cut(s)	102, 149, 698, 1079, 1470, 2430
BseNI	ACTGG	4 cut(s)	482, 1063, 1731, 1736
BseRI	GAGGAG	3 cut(s)	398, 431, 672
BseSI	GKGCMC	1 cut(s)	1143
BseXI	GCAGC	7 cut(s)	135, 441, 1164, 1589, 1592, 1701, 1875
BsgI	GTGCAG	1 cut(s)	1416
Bsh1236I	CGCG	1 cut(s)	1461
BshFI	GGCC	6 cut(s)	117, 156, 325, 790, 1350, 1688
BsiHKAI	GWGCWC	3 cut(s)	1066, 1987, 2223
BsiHKCI	CYCGRG	3 cut(s)	484, 1986, 2039
BsiSI	CCGG	2 cut(s)	114, 153
BslFI	GGGAC	2 cut(s)	488, 494
BslI	CCNNNNNNNGG	3 cut(s)	113, 277, 278
BsmAI	GTCTC	3 cut(s)	142, 1983, 2307
BsmFI	GGGAC	2 cut(s)	488, 494
BsmI	GAATGC	2 cut(s)	1728, 2457
BsnI	GGCC	6 cut(s)	117, 156, 325, 790, 1350, 1688
Bso31I	GGTCTC	1 cut(s)	2307
BsoBI	CYCGRG	3 cut(s)	484, 1986, 2039
Bsp119I	TTCGAA	1 cut(s)	55
Bsp1286I	GDGCHC	4 cut(s)	1066, 1143, 1987, 2223
Bsp1407I	TGTACA	1 cut(s)	903
Bsp1720I	GCTNAGC	2 cut(s)	1065, 1238
BspACI	CCGC	4 cut(s)	99, 111, 365, 1180
BspANI	GGCC	6 cut(s)	117, 156, 325, 790, 1350, 1688
BspCNI	CTCAG	6 cut(s)	101, 150, 697, 1078, 1471, 2431
BspFNI	CGCG	1 cut(s)	1461
BspHI	TCATGA	1 cut(s)	2365
BspLI	GGNNCC	2 cut(s)	270, 1314
BspMAI	CTGCAG	2 cut(s)	1877, 1982
BspMI	ACCTGC	2 cut(s)	932, 1060
BspPI	GGATC	1 cut(s)	1826
BspQI	GCTCTTC	1 cut(s)	2228
BspT104I	TTCGAA	1 cut(s)	55
BspTI	CTTAAG	1 cut(s)	1172
BspTNI	GGTCTC	1 cut(s)	2307
BsrFI	RCCGGY	2 cut(s)	113, 152
BsrGI	TGTACA	1 cut(s)	903
BsrI	ACTGG	4 cut(s)	482, 1063, 1731, 1736
BssAI	RCCGGY	2 cut(s)	113, 152
BssECI	CCNNGG	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	233, 1808
Bst6I	CTCTTC	4 cut(s)	70, 1179, 1403, 2228
BstAFI	CTTAAG	1 cut(s)	1172
BstAPI	GCANNNNNTGC	3 cut(s)	1439, 1723, 2189
BstAUI	TGTACA	1 cut(s)	903
BstBAI	YACGTR	1 cut(s)	1906
BstBI	TTCGAA	1 cut(s)	55
BstC8I	GCNNGC	5 cut(s)	115, 732, 736, 1358, 1793
BstEII	GGTNACC	1 cut(s)	2093
BstF5I	GGATG	5 cut(s)	33, 508, 772, 1555, 1701
BstFNI	CGCG	1 cut(s)	1461
BstHHI	GCGC	1 cut(s)	1461
BstMAI	GTCTC	3 cut(s)	142, 1983, 2307
BstMWI	GCNNNNNNNGC	7 cut(s)	98, 123, 1439, 1723, 1801, 2189, 2210
BstNI	CCWGG	2 cut(s)	233, 1808
BstNSI	RCATGY	2 cut(s)	1332, 1795
BstPAI	GACNNNNGTC	1 cut(s)	134
BstPI	GGTNACC	1 cut(s)	2093
BstSCI	CCNGG	2 cut(s)	231, 1806
BstSFI	CTRYAG	4 cut(s)	199, 1827, 1873, 1978
BstSLI	GKGCMC	1 cut(s)	1143
BstUI	CGCG	1 cut(s)	1461
BstV1I	GCAGC	7 cut(s)	135, 441, 1164, 1589, 1592, 1701, 1875
BstX2I	RGATCY	3 cut(s)	574, 1318, 1831
BstYI	RGATCY	3 cut(s)	574, 1318, 1831
BsuRI	GGCC	6 cut(s)	117, 156, 325, 790, 1350, 1688
BtsCI	GGATG	5 cut(s)	33, 508, 772, 1555, 1701
BtsI	GCAGTG	2 cut(s)	1141, 2220
BtsIMutI	CAGTG	5 cut(s)	679, 1014, 1141, 1675, 2220
BveI	ACCTGC	2 cut(s)	932, 1060
Cac8I	GCNNGC	5 cut(s)	115, 732, 736, 1358, 1793
CciI	TCATGA	1 cut(s)	2365
CfoI	GCGC	1 cut(s)	1461
Cfr10I	RCCGGY	2 cut(s)	113, 152
Cfr13I	GGNCC	6 cut(s)	116, 268, 788, 1259, 1687, 1930
Csp6I	GTAC	4 cut(s)	694, 904, 1232, 1402
CviQI	GTAC	4 cut(s)	694, 904, 1232, 1402
DraIII	CACNNNGTG	3 cut(s)	449, 1439, 2189
Eam1104I	CTCTTC	4 cut(s)	70, 1179, 1403, 2228
EarI	CTCTTC	4 cut(s)	70, 1179, 1403, 2228
Ecl136II	GAGCTC	3 cut(s)	1064, 1985, 2221
Eco24I	GRGCYC	3 cut(s)	1066, 1987, 2223
Eco31I	GGTCTC	1 cut(s)	2307
Eco32I	GATATC	2 cut(s)	640, 2355
Eco47I	GGWCC	3 cut(s)	268, 1259, 1930
Eco53kI	GAGCTC	3 cut(s)	1064, 1985, 2221
Eco57I	CTGAAG	2 cut(s)	777, 2334
Eco88I	CYCGRG	3 cut(s)	484, 1986, 2039
Eco91I	GGTNACC	1 cut(s)	2093
EcoICRI	GAGCTC	3 cut(s)	1064, 1985, 2221
EcoO109I	RGGNCCY	2 cut(s)	268, 1930
EcoO65I	GGTNACC	1 cut(s)	2093
EcoRII	CCWGG	2 cut(s)	231, 1806
EcoRV	GATATC	2 cut(s)	640, 2355
EcoT22I	ATGCAT	1 cut(s)	2034
EcoT38I	GRGCYC	3 cut(s)	1066, 1987, 2223
FalI	AAGNNNNNCTT	2 cut(s)	1176, 1208
FaqI	GGGAC	2 cut(s)	488, 494
FauI	CCCGC	1 cut(s)	1173
FbaI	TGATCA	4 cut(s)	190, 1108, 2362, 2445
Fnu4HI	GCNGC	9 cut(s)	99, 124, 366, 455, 1178, 1578, 1581, 1715, 1889
FokI	GGATG	5 cut(s)	20, 515, 779, 1562, 1708
FriOI	GRGCYC	3 cut(s)	1066, 1987, 2223
Fsp4HI	GCNGC	9 cut(s)	99, 124, 366, 455, 1178, 1578, 1581, 1715, 1889
FspBI	CTAG	3 cut(s)	1505, 1626, 1679
GlaI	GCGC	1 cut(s)	1460
GluI	GCNGC	9 cut(s)	99, 124, 366, 455, 1178, 1578, 1581, 1715, 1889
GsuI	CTGGAG	2 cut(s)	1080, 1829
HaeIII	GGCC	6 cut(s)	117, 156, 325, 790, 1350, 1688
HapII	CCGG	2 cut(s)	114, 153
HhaI	GCGC	1 cut(s)	1461
Hin6I	GCGC	1 cut(s)	1459
HinP1I	GCGC	1 cut(s)	1459
HindIII	AAGCTT	2 cut(s)	957, 2001
HinfI	GANTC	7 cut(s)	162, 223, 275, 482, 1750, 1869, 2411
HpaII	CCGG	2 cut(s)	114, 153
HphI	GGTGA	5 cut(s)	142, 200, 2105, 2392, 2420
Hpy166II	GTNNAC	6 cut(s)	696, 969, 1232, 1259, 1772, 1903
Hpy188I	TCNGA	8 cut(s)	142, 228, 687, 1080, 1480, 1947, 2232, 2347
Hpy8I	GTNNAC	6 cut(s)	696, 969, 1232, 1259, 1772, 1903
HpyAV	CCTTC	5 cut(s)	336, 416, 772, 801, 814
HpyCH4IV	ACGT	2 cut(s)	602, 1905
HpyF10VI	GCNNNNNNNGC	7 cut(s)	98, 123, 1439, 1723, 1801, 2189, 2210
HpySE526I	ACGT	2 cut(s)	602, 1905
HspAI	GCGC	1 cut(s)	1459
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Ksp22I	TGATCA	4 cut(s)	190, 1108, 2362, 2445
LguI	GCTCTTC	1 cut(s)	2228
LmnI	GCTCC	3 cut(s)	1061, 1809, 2218
Lsp1109I	GCAGC	7 cut(s)	135, 441, 1164, 1589, 1592, 1701, 1875
LweI	GCATC	7 cut(s)	535, 736, 757, 1179, 2095, 2328, 2373
MaeI	CTAG	3 cut(s)	1505, 1626, 1679
MaeII	ACGT	2 cut(s)	602, 1905
MaeIII	GTNAC	8 cut(s)	1009, 1114, 1633, 1738, 1763, 1843, 2053, 2093
MfeI	CAATTG	1 cut(s)	1208
MflI	RGATCY	3 cut(s)	574, 1318, 1831
MhlI	GDGCHC	4 cut(s)	1066, 1143, 1987, 2223
MlyI	GAGTC	3 cut(s)	476, 1744, 1863
MmeI	TCCRAC	1 cut(s)	1859
Mph1103I	ATGCAT	1 cut(s)	2034
MroNI	GCCGGC	1 cut(s)	113
MspCI	CTTAAG	1 cut(s)	1172
MspI	CCGG	2 cut(s)	114, 153
MspR9I	CCNGG	2 cut(s)	233, 1808
MunI	CAATTG	1 cut(s)	1208
Mva1269I	GAATGC	2 cut(s)	1728, 2457
MvaI	CCWGG	2 cut(s)	233, 1808
MvnI	CGCG	1 cut(s)	1461
MwoI	GCNNNNNNNGC	7 cut(s)	98, 123, 1439, 1723, 1801, 2189, 2210
NaeI	GCCGGC	1 cut(s)	115
NgoMIV	GCCGGC	1 cut(s)	113
NlaIV	GGNNCC	2 cut(s)	270, 1314
NmuCI	GTSAC	3 cut(s)	1009, 1633, 2093
NsiI	ATGCAT	1 cut(s)	2034
NspI	RCATGY	2 cut(s)	1332, 1795
NspV	TTCGAA	1 cut(s)	55
PaeI	GCATGC	1 cut(s)	1795
PaeR7I	CTCGAG	3 cut(s)	484, 1986, 2039
PagI	TCATGA	1 cut(s)	2365
PciI	ACATGT	1 cut(s)	1328
PciSI	GCTCTTC	1 cut(s)	2228
PctI	GAATGC	2 cut(s)	1728, 2457
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	4 cut(s)	162, 223, 275, 2411
PfoI	TCCNGGA	1 cut(s)	1806
PkrI	GCNGC	9 cut(s)	100, 125, 367, 456, 1179, 1579, 1582, 1716, 1890
PleI	GAGTC	3 cut(s)	476, 1744, 1863
PpsI	GAGTC	3 cut(s)	476, 1744, 1863
Ppu21I	YACGTR	1 cut(s)	1906
PpuMI	RGGWCCY	2 cut(s)	268, 1930
PscI	ACATGT	1 cut(s)	1328
PshAI	GACNNNNGTC	1 cut(s)	134
PshBI	ATTAAT	2 cut(s)	2174, 2283
PsiI	TTATAA	2 cut(s)	912, 1325
Psp124BI	GAGCTC	3 cut(s)	1066, 1987, 2223
Psp5II	RGGWCCY	2 cut(s)	268, 1930
Psp6I	CCWGG	2 cut(s)	231, 1806
PspEI	GGTNACC	1 cut(s)	2093
PspGI	CCWGG	2 cut(s)	231, 1806
PspN4I	GGNNCC	2 cut(s)	270, 1314
PspPI	GGNCC	6 cut(s)	116, 268, 788, 1259, 1687, 1930
PspPPI	RGGWCCY	2 cut(s)	268, 1930
PspXI	VCTCGAGB	1 cut(s)	484
PstI	CTGCAG	2 cut(s)	1877, 1982
PsuI	RGATCY	3 cut(s)	574, 1318, 1831
RsaI	GTAC	4 cut(s)	695, 905, 1233, 1403
RsaNI	GTAC	4 cut(s)	694, 904, 1232, 1402
SacI	GAGCTC	3 cut(s)	1066, 1987, 2223
SapI	GCTCTTC	1 cut(s)	2228
SatI	GCNGC	9 cut(s)	99, 124, 366, 455, 1178, 1578, 1581, 1715, 1889
Sau96I	GGNCC	6 cut(s)	116, 268, 788, 1259, 1687, 1930
SchI	GAGTC	3 cut(s)	476, 1744, 1863
ScrFI	CCNGG	2 cut(s)	233, 1808
SduI	GDGCHC	4 cut(s)	1066, 1143, 1987, 2223
SfaNI	GCATC	7 cut(s)	535, 736, 757, 1179, 2095, 2328, 2373
SfcI	CTRYAG	4 cut(s)	199, 1827, 1873, 1978
Sfr274I	CTCGAG	3 cut(s)	484, 1986, 2039
SfuI	TTCGAA	1 cut(s)	55
SinI	GGWCC	3 cut(s)	268, 1259, 1930
SlaI	CTCGAG	3 cut(s)	484, 1986, 2039
SmlI	CTYRAG	5 cut(s)	263, 484, 1172, 1986, 2039
SmoI	CTYRAG	5 cut(s)	263, 484, 1172, 1986, 2039
SpeI	ACTAGT	1 cut(s)	1678
SphI	GCATGC	1 cut(s)	1795
SsiI	CCGC	4 cut(s)	99, 111, 365, 1180
SspI	AATATT	7 cut(s)	208, 916, 1021, 1159, 1540, 1573, 2324
SspMI	CTAG	3 cut(s)	1505, 1626, 1679
SstI	GAGCTC	3 cut(s)	1066, 1987, 2223
StyD4I	CCNGG	2 cut(s)	231, 1806
TaiI	ACGT	2 cut(s)	605, 1908
TatI	WGTACW	4 cut(s)	693, 903, 1231, 1401
TauI	GCSGC	2 cut(s)	101, 368
TfiI	GAWTC	4 cut(s)	162, 223, 275, 2411
TscAI	CASTG	5 cut(s)	679, 1014, 1148, 1675, 2220
TseFI	GTSAC	3 cut(s)	1009, 1633, 2093
TseI	GCWGC	7 cut(s)	123, 454, 1177, 1577, 1580, 1714, 1888
Tsp45I	GTSAC	3 cut(s)	1009, 1633, 2093
TspGWI	ACGGA	2 cut(s)	650, 1708
TspRI	CASTG	5 cut(s)	679, 1014, 1148, 1675, 2220
Vha464I	CTTAAG	1 cut(s)	1172
VpaK11BI	GGWCC	3 cut(s)	268, 1259, 1930
VspI	ATTAAT	2 cut(s)	2174, 2283
XapI	RAATTY	1 cut(s)	50
XceI	RCATGY	2 cut(s)	1332, 1795
XhoI	CTCGAG	3 cut(s)	484, 1986, 2039
XspI	CTAG	3 cut(s)	1505, 1626, 1679
Zsp2I	ATGCAT	1 cut(s)	2034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.